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Department of Biochemistry profile

Professor Julian Eaton-Rye

PositionProfessor
DepartmentDepartment of Biochemistry
QualificationsBSc(Manc) PhD(Ill)
Research summaryPhotosynthesis

Research

Life on our planet is driven by Photosystem II that captures sunlight and extracts electrons from H2O to reduce CO2 into sugars while releasing the O2 we breathe. My laboratory concentrates on structure-function studies of Photosystem II in plants and cyanobacteria. Currently we are working on protein-protein interactions that facilitate sustained water-splitting activity by Photosystem II in response to changing environmental conditions such as fluctuating light levels, temperature and pH. We are also interested in protein factors that are required for the assembly of Photosystem II. Since the sun provides more energy in 1 hour than our entire global energy consumption in 1 year, we are also working on metabolic engineering to couple the harvesting of light by photosynthetic protein complexes to the efficient production of biofuels in cyanobacteria.

Media appearances

Publications

Morris, J. N., Eaton-Rye, J. J., & Summerfield, T. C. (2017). Phenotypic variation in wild-type substrains of the model cyanobacterium Synechocystis sp. PCC 6803. New Zealand Journal of Botany, 55(1), 25-35. doi: 10.1080/0028825X.2016.1231124

Jackson, S. A., & Eaton-Rye, J. J. (2017). Modular growth vessels for the cultivation of the cyanobacterium Synechococcus sp. PCC 7002. New Zealand Journal of Botany, 55(1), 14-24. doi: 10.1080/0028825X.2016.1231123

Eaton-Rye, J. J. (2017). Assembly of the photosystem II membrane-protein complex of oxygenic photosynthesis. Frontiers in Plant Science, 8, 884. doi: 10.3389/fpls.2017.00884

Morris, J. N., Eaton-Rye, J. J., & Summerfield, T. C. (2016). Environmental pH and the requirement for the extrinsic proteins of Photosystem II in the function of cyanobacterial photosynthesis. Frontiers in Plant Science, 7, 1135. doi: 10.3389/fpls.2016.01135

Crawford, T. S., Hanning, K. R., Chua, J. P. S., Eaton-Rye, J. J., & Summerfield, T. C. (2016). Comparison of D1´- and D1-containing PS II reaction centre complexes under different environmental conditions in Synechocystis sp. PCC 6803. Plant, Cell & Environment, 39, 1715-1726. doi: 10.1111/pce.12738

Edited Book - Research

Eaton-Rye, J. J., Tripathy, B. C., & Sharkey, T. D. (Eds.). (2012). Photosynthesis: Plastid biology, energy conversion and carbon assimilation. New York: Springer, 856p. doi: 10.1007/978-94-007-1579-0

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Chapter in Book - Research

Najafpour, M. M., Sedigh, D. J., Eaton-Rye, J. J., & Allakhverdiev, S. I. (2014). The water-oxidizing complex in Photosystem II. In S. I. Allakhverdiev, A. B. Rubin & V. A. Shuvalov (Eds.), Contemporary problems of photosynthesis (Vol. 1). (pp. 325-341). Moscow, Russia: Izhevsk Institute of Computer Science.

Hill, R. E., & Eaton-Rye, J. J. (2014). Plasmid Construction by SLIC or Sequence and Ligation-Independent Cloning. In S. Valla & R. Lale (Eds.), DNA cloning and assembly methods: Methods in molecular biology (Vol. 1116). (pp. 25-36). New York: Humana. doi: 10.1007/978-1-62703-764-8_2

McConnell, I. L., Eaton-Rye, J. J., & van Rensen, J. J. S. (2012). Regulation of Photosystem II electron transport by bicarbonate. In J. J. Eaton-Rye, B. C. Tripathy & T. D. Sharkey (Eds.), Photosynthesis: Plastid biology, energy conversion and carbon assimilation. (pp. 475-500). New York: Springer. doi: 10.1007/978-94-007-1579-0

Eaton-Rye, J. (2010). Construction of gene interruptions and gene deletions in the cyanobacterium Synechocystis sp. strain PCC 6803. In R. Carpentier (Ed.), Photosynthesis Research Protocols. (2nd ed.) (pp. 295-312). NY: Springer. doi: 10.1007/978-1-60761-925-3_22

Eaton-Rye, J. J. (2004). The construction of gene knockouts in the Cyanobacterium Synechocystis sp. PCC 6803. In R. Carpentier (Ed.), Methods in molecular biology, vol. 274: Photosynthesis research protocols. (pp. 309-324). Totowa, USA: Humana Press.

Clarke, S. M., & Eaton-Rye, J. J. (1995). Oligonucleotide-directed complementation of a lethal deletion within the large hydrophilic domain of CP47. In P. Mathis (Ed.), Photosynthesis: From Light to Biosphere: Proceedings of the Xth International Photosynthesis Congress, Vol. 3. (pp. 469-472). Dordrecht: Kluwer.

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Chapter in Book - Other

Eaton-Rye, J. J. (2012). Contributions of Govindjee, 1970-1999. In J. J. Eaton-Rye, B. C. Tripathy & T. D. Sharkey (Eds.), Photosynthesis: Plastid biology, energy conversion and carbon assimilation. New York: Springer. doi: 10.1007/978-94-007-1579-0

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Journal - Research Article

Morris, J. N., Eaton-Rye, J. J., & Summerfield, T. C. (2017). Phenotypic variation in wild-type substrains of the model cyanobacterium Synechocystis sp. PCC 6803. New Zealand Journal of Botany, 55(1), 25-35. doi: 10.1080/0028825X.2016.1231124

Jackson, S. A., & Eaton-Rye, J. J. (2017). Modular growth vessels for the cultivation of the cyanobacterium Synechococcus sp. PCC 7002. New Zealand Journal of Botany, 55(1), 14-24. doi: 10.1080/0028825X.2016.1231123

Morris, J. N., Eaton-Rye, J. J., & Summerfield, T. C. (2016). Environmental pH and the requirement for the extrinsic proteins of Photosystem II in the function of cyanobacterial photosynthesis. Frontiers in Plant Science, 7, 1135. doi: 10.3389/fpls.2016.01135

Crawford, T. S., Hanning, K. R., Chua, J. P. S., Eaton-Rye, J. J., & Summerfield, T. C. (2016). Comparison of D1´- and D1-containing PS II reaction centre complexes under different environmental conditions in Synechocystis sp. PCC 6803. Plant, Cell & Environment, 39, 1715-1726. doi: 10.1111/pce.12738

Crawford, T. S., Eaton-Rye, J. J., & Summerfield, T. C. (2016). Mutation of Gly195 of the ChlH subunit of Mg-chelatase reduces chlorophyll and further disrupts PS II assembly in a Ycf48-deficient strain of Synechocystis sp. PCC 6803. Frontiers in Plant Science, 7, 1060. doi: 10.3389/fpls.2016.01060

Najafpour, M. M., Renger, G., Holyńska, M., Moghaddam, A. N., Aro, E.-M., Carpentier, R., … Eaton-Rye, J. J., … Allakhverdiev, S. I. (2016). Manganese compounds as water-oxidizing catalysts: From the natural water-oxidizing complex to nanosized manganese oxide structures. Chemical Reviews, 116(5), 2886-2936. doi: 10.1021/acs.chemrev.5b00340

Najafpour, M. M., Fekete, M., Sedigh, D. J., Aro, E.-M., Carpentier, R., Eaton-Rye, J. J., … Spiccia, L. (2015). Damage management in water-oxidizing catalysts: From photosystem II to nanosized metal oxides. ACS Catalysis, 5(3), 1499-1512. doi: 10.1021/cs5015157

Nath, K., Najafpour, M. M., Voloshin, R. A., Balaghi, S. E., Tyystjärvi, E., Timilsina, R., Eaton-Rye, J. J., … Allakhverdiev, S. I. (2015). Photobiological hydrogen production and artificial photosynthesis for clean energy: From bio to nanotechnologies. Photosynthesis Research, 126(2-3), 237-247. doi: 10.1007/s11120-015-0139-4

Jackson, S. A., & Eaton-Rye, J. J. (2015). Characterization of a Synechocystis sp. PCC 6803 double mutant lacking the CyanoP and Ycf48 proteins of Photosystem II. Photosynthesis Research, 124, 217-229. doi: 10.1007/s11120-015-0122-0

Jackson, S. A., Eaton-Rye, J. J., Bryant, D. A., Posewitz, M. C., & Davies, F. K. (2015). Dynamics of photosynthesis in the glycogen-deficient glgC mutant of Synechococcus sp. PCC 7002. Applied & Environmental Microbiology, 81(18), 6210-6222. doi: 10.1128/aem.01751-15

Mabbitt, P. D., Wilbanks, S. M., & Eaton-Rye, J. J. (2014). Duplication and divergence of the Psb27 subunit of Photosystem II in the green algal lineage. New Zealand Journal of Botany, 52(1), 74-83. doi: 10.1080/0028825X.2013.859629

Najafpour, M. M., Isaloo, M. A., Eaton-Rye, J. J., Tomo, T., Nishihara, H., Satoh, K., … Allakhverdiev, S. I. (2014). Water exchange rate in manganese-based water-oxidizing catalysts in photosynthetic systems: From the water-oxidizing complex in photosystem II to nano-sized manganese oxides. Biochimica et Biophysica Acta: Bioenergetics, 1837(9), 1395-1410. doi: 10.1016/j.bbabio.2014.03.008

Mabbitt, P. D., Wilbanks, S. M., & Eaton-Rye, J. J. (2014). Structure and function of the hydrophilic Photosystem II assembly proteins: Psb27, Psb28 and Ycf48. Plant Physiology & Biochemistry, 81, 96-107. doi: 10.1016/j.plaphy.2014.02.013

Najafpour, M. M., Ghobadi, M. Z., Haghighi, B., Eaton-Rye, J. J., Tomo, T., Shen, J.-R., & Allakhverdiev, S. I. (2014). Nano-sized manganese-calcium cluster in photosystem II. Biochemistry (Moscow), 79(4), 324-336. doi: 10.1134/S0006297914040026

Morris, J. N., Crawford, T. S., Jeffs, A., Stockwell, P. A., Eaton-Rye, J. J., & Summerfield, T. C. (2014). Whole genome re-sequencing of two ‘wild-type’ strains of the model cyanobacterium Synechocystis sp. PCC 6803. New Zealand Journal of Botany, 52(1), 36-47. doi: 10.1080/0028825X.2013.846267

Jackson, S. A., Hervey, J. R. D., Dale, A. J., & Eaton-Rye, J. J. (2014). Removal of both Ycf48 and Psb27 in Synechocystis sp. PCC 6803 disrupts Photosystem II assembly and alters QĀ oxidation in the mature complex. FEBS Letters, 588(20), 3751-3760. doi: 10.1016/j.febslet.2014.08.024

Lamb, J. J., Hill, R. E., Eaton-Rye, J. J., & Hohmann-Marriott, M. F. (2014). Functional role of PilA in iron acquisition in the Cyanobacterium Synechocystis sp. PCC 6803. PLoS ONE, 9(8), e105761. doi: 10.1371/journal.pone.0105761

Luo, H., Jackson, S. A., Fagerlund, R. D., Summerfield, T. C., & Eaton-Rye, J. J. (2014). The importance of the hydrophilic region of PsbL for the plastoquinone electron acceptor complex of Photosystem II. Biochimica et Biophysica Acta: Bioenergetics, 1837(9), 1435-1446. doi: 10.1016/j.bbabio.2014.02.015

Najafpour, M. M., Rahimi, F., Sedigh, D. J., Carpentier, R., Eaton-Rye, J. J., Shen, J.-R., & Allakhverdiev, S. I. (2013). Gold or silver deposited on layered manganese oxide: A functional model for the water-oxidizing complex in photosystem II. Photosynthesis Research, 117(1-3), 423-429. doi: 10.1007/s11120-013-9899-x

Burut-Archanai, S., Eaton-Rye, J. J., Incharoensakdi, A., & Powtongsook, S. (2013). Phosphorus removal in a closed recirculating aquaculture system using the cyanobacterium Synechocystis sp. PCC 6803 strain lacking the SphU regulator of the Pho regulon. Biochemical Engineering Journal, 74, 69-75. doi: 10.1016/j.bej.2013.03.004

Mabbitt, P. D., Eaton-Rye, J. J., & Wilbanks, S. M. (2013). Mutational analysis of the stability of Psb27 from Synechocystis sp. PCC 6803: Implications for models of Psb27 structure and binding to CP43. European Biophysics Journal, 42, 787-793. doi: 10.1007/s00249-013-0926-9

Najafpour, M. M., Tabrizi, M. A., Haghighi, B., Eaton-Rye, J. J., Carpentier, R., & Allakhverdiev, S. I. (2013). Imidazolium or guanidinium/layered manganese (III, IV) oxide hybrid as a promising structural model for the water-oxidizing complex of Photosystem II for artificial photosynthetic systems. Photosynthesis Research, 117, 413-421. doi: 10.1007/s11120-013-9814-5

Lamb, J. J., Eaton-Rye, J. J., & Hohmann-Marriott, M. F. (2013). A cost-effective solution for the reliable determination of cell numbers of microorganisms in liquid culture. Current Microbiology, 67, 123-129. doi: 10.1007/s00284-013-0340-7

Summerfield, T. C., Crawford, T. S., Young, R. D., Chua, J. P. S., Macdonald, R. L., Sherman, L. A., & Eaton-Rye, J. J. (2013). Environmental pH affects photoautotrophic growth of Synechocystis sp. PCC 6803 strains carrying mutations in the lumenal proteins of PSII. Plant & Cell Physiology, 54(6), 859-874. doi: 10.1093/pcp/pct036

Bricker, T. M., Roose, J. L., Fagerlund, R. D., Frankel, L. K., & Eaton-Rye, J. J. (2012). The extrinsic proteins of Photosystem II. Biochimica et Biophysica Acta: Bioenergetics, 1817(1), 121-142. doi: 10.1016/j.bbabio.2011.07.006

Jackson, S. A., Hinds, M. G., & Eaton-Rye, J. J. (2012). Solution structure of CyanoP from Synechocystis sp. PCC 6803: New insights on the structural basis for functional specialization amongst PsbP family proteins. Biochimica et Biophysica Acta: Bioenergetics, 1817(8), 1331-1338. doi: 10.1016/j.bbabio.2012.02.032

Lamb, J. J., Eaton-Rye, J. J., & Hohmann-Marriott, M. F. (2012). An LED-based fluorometer for chlorophyll quantification in the laboratory and in the field. Photosynthesis Research, 114(1), 59-68. doi: 10.1007/s11120-012-9777-y

Vos, M. H., Bouzhir-Sima, L., Lambry, J.-C., Luo, H., Eaton-Rye, J. J., Ioanoviciu, A., … Liebl, U. (2012). Ultrafast ligand dynamics in the heme-based GAF sensor domains of the histidine kinases DosS and DosT from Mycobacterium tuberculosis. Biochemistry, 51(1), 159-166. doi: 10.1021/bi201467c

Najafpour, M. M., Moghaddam, A. N., Yang, Y. N., Aro, E.-M., Carpentier, R., Eaton-Rye, J. J., … Allakhverdiev, S. I. (2012). Biological water-oxidizing complex: A nano-sized manganese-calcium oxide in a protein environment. Photosynthesis Research, 114(1), 1-13. doi: 10.1007/s11120-012-9778-x

Shevela, D., Eaton-Rye, J. J., Shen, J.-R., & Govindjee (2012). Photosystem II and the unique role of bicarbonate: A historical perspective. Biochimica et Biophysica Acta: Bioenergetics, 1817(8), 1134-1151. doi: 10.1016/j.bbabio.2012.04.003

Burut-Archanai, S., Eaton-Rye, J. J., & Incharoensakdi, A. (2011). Na+-stimulated phosphate uptake system in Synechocystis sp. PCC 6803 with Pst1 as a main transporter. BMC Microbiology, 11, 225. doi: 10.1186/1471-2180-11-225

Fagerlund, R. D., & Eaton-Rye, J. J. (2011). The lipoproteins of cyanobacterial photosystem II. Journal of Photochemistry & Photobiology B, 104(1-2), 191-203. doi: 10.1016/j.jphotobiol.2011.01.022

Ehimen, E. A., Sun, Z. F., Carrington, C. G., Birch, E. J., & Eaton-Rye, J. J. (2011). Anaerobic digestion of microalgae residues resulting from the biodiesel production process. Applied Energy, 88(10), 3454-3463. doi: 10.1016/j.apenergy.2010.10.020

Nagarajan, A., Winter, R., Eaton-Rye, J., & Burnap, R. (2011). A synthetic DNA and fusion PCR approach to the ectopic expression of high levels of the D1 protein of photosystem II in Synechocystis sp. PCC 6803. Journal of Photochemistry & Photobiology B, 104(1-2), 212-219. doi: 10.1016/j.jphotobiol.2011.02.009

Jackson, S. A., Fagerlund, R. D., Wilbanks, S. M., & Eaton-Rye, J. J. (2010). Crystal structure of PsbQ from Synechocystis sp. PCC 6803 at 1.8 Å: Implications for binding and function in cyanobacterial photosystem II. Biochemistry, 49(13), 2765-2767. doi: 10.1021/bi100217h

Hohmann-Marriott, M. F., Takizawa, K., Eaton-Rye, J. J., Mets, L., & Minagawa, J. (2010). The redox state of the plastoquinone pool directly modulates minimum chlorophyll fluorescence yield in Chlamydomonas reinhardtii. FEBS Letters, 584, 1021-1026. doi: 10.1016/j.febslet.2010.01.052

Burut-Archanai, S., Incharoensakdi, A., & Eaton-Rye, J. J. (2009). The extended N-terminal region of SphS is required for detection of external phosphate levels in Synechocystis sp. PCC 6803. Biochemical & Biophysical Research Communications, 378(3), 383-388. doi: 10.1016/j.bbrc.2008.11.012

Mabbitt, P. D., Rautureau, G. J. P., Day, C. L., Wilbanks, S. M., Eaton-Rye, J. J., & Hinds, M. G. (2009). Solution structure of Psb27 from cyanobacterial photosystem II. Biochemistry, 48(37), 8771-8773. doi: 10.1021/bi901309c

Bentley, F. K., Luo, H., Dilbeck, P., Burnap, R. L., & Eaton-Rye, J. J. (2008). Effects of inactivating psbM and psbT on photodamage and assembly of photosystem II in Synechocystis sp. PCC 6803. Biochemistry, 47(44), 11637-11646. doi: 10.1021/bi800804h

Luo, H., & Eaton-Rye, J. (2008). Directed mutagenesis of the transmembrane domain of the PsbL subunit of photosystem II in Synechocystis sp. PCC 6803. Photosynthesis Research, 98(1-3), 337-347. doi: 10.1007/s11120-008-9375-1

Summerfield, T. C., Eaton-Rye, J. J., & Sherman, L. A. (2007). Global gene expression of a ΔPsbO:ΔPsbU mutant and a spontaneous revertant in the cyanobacterium Synechocystis sp. strain PCC 6803. Photosynthesis Research, 94, 265-274.

Eaton-Rye, J. J. (2007). Celebrating Govindjee's 50 years in photosynthesis research and his 75th birthday. Photosynthesis Research, 93, 1-5.

Eaton-Rye, J. J. (2007). Snapshots of the Govindjee lab from the late 1960s to the late 1990s, and beyond... Photosynthesis Research, 94, 153-178.

Juntarajumnong, W., Eaton-Rye, J. J., & Incharoensakdi, A. (2007). Two-component signal transduction in Synechocystis sp. PCC 6803 under phosphate limitation: Role of acetyl phosphate. Journal of Biochemistry & Molecular Biology, 40(5), 708-714.

Juntarajumnong, W., Hirani, T. A., Simpson, J. M., Incharoensakdi, A., & Eaton-Rye, J. J. (2007). Phosphate sensing in Synechocystis sp. PCC 6803: SphU and the SphS-SphR two-component regulatory system. Archives of Microbiology, 188, 389-402.

Juntarajumnong, W., Incharoensakdi, A., & Eaton-Rye, J. J. (2007). Identification of the start codon for sphS encoding the phosphate-sensing histidine kinase in Synechocystis sp. PCC 6803. Current Microbiology, 55, 142-146.

Summerfield, T. C., & Eaton-Rye, J. J. (2006). Pseudocyphellaria crocata, P. neglecta and P. perpetua from the Northern and Southern Hemispheres are a phylogenetic species and share cyanobionts. New Phytologist, 170, 597-607.

Summerfield, T. C., Winter, R. T., & Eaton-Rye, J. J. (2005). Investigation of a requirement for the PsbP-like protein in Synechocystis sp. PCC 6803. Photosynthesis Research, 84, 263-268.

Summerfield, T. C., Shand, J. A., Bentley, F. K., & Eaton-Rye, J. J. (2005). PsbQ (SII1638) in Synechocystis sp. PCC 6803 is required for photosystem II activity in specific mutants and in nutrient-limiting conditions. Biochemistry, 44, 805-815.

Eaton-Rye, J. J. (2005). Requirements for different combinations of the extrinsic proteins in specific cyanobacterial Photosystem II mutants. Photosynthesis Research, 84, 275-281.

Anderson, L. B., Ouellette, A. J. A., Eaton-Rye, J., Maderia, M., MacCoss, M. J., Yates, III, J. R., & Barry, B. A. (2004). Evidence for a post-translational modification, aspartyl aldehyde, in a photosynthetic membrane protein. Journal of the American Chemical Society, 126, 8399-8405.

Li, Z., Andrews, H., Eaton-Rye, J. J., & Burnap, R. L. (2004). In situ effects of mutations of the extrinsic cytochrome c550 of photosystem II in Synechocystis sp. PCC6803. Biochemistry, 43, 14161-14170.

Eaton-Rye, J. J., Shand, J. A., & Nicoll, W. S. (2003). pH-dependent photoautotrophic growth of specific photosystem II mutants lacking lumenal extrinsic polypeptides in Synechocystis PCC 6803. FEBS Letters, 543, 148-153.

Kimura, A., Eaton-Rye, J. J., Morita, E., Nishiyama, Y., & Hayashi, H. (2002). Protection of the oxygen-evolving machinery by the extrinsic proteins of photosystem II is essential for development of cellular thermotolerance in Synechocystis sp. PCC 6803. Plant & Cell Physiology, 43, 932-938.

Clarke, S., Funk, C., Hendry, G., Shand, J. A., Wydrzynski, T., & Eaton-Rye, J. J. (2002). Amino acid deletions in the cytosolic domains of the chlorophyll a-binding protien CP47 slow QA- oxidation and/or prevent the assembly of photosystem II. Plant Molecular Biology, 50, 563-572.

Miskell, J. A., Parmenter, G., & Eaton-Rye, J. J. (2002). Decreased Hill reaction rates and slow turnover of transitory starch in the obligate shade plant Panax quinquefolius L. (American ginseng). Planta, 215, 969-979.

Summerfield, T., Galloway, D. J., & Eaton-Rye, J. J. (2002). Species of cyanolichens from Pseudocyphellaria with indistinguishable ITS sequences have different photobionts. New Phytologist, 155, 121-129.

Hirani, T. A., Suzuki, I., Murata, N., Hayashi, H., & Eaton-Rye, J. J. (2001). Characterization of a two-component signal transduction system involved in the induction of alkaline phosphatase under phosphate-limiting conditions in Synechocystis sp.PCC6803. Plant Molecular Biology, 45, 133-144.

Clarke, S. M., & Eaton-Rye, J. J. (2000). Amino acid deletions in loop C of the chlorophyll a-binding protein CP47 alter the chloride requirement and/or prevent the assembly of photosystem II. Plant Molecular Biology, 44, 591-601.

Clarke, S. M., & Eaton-Rye, J. J. (1999). Mutation of Phe-363 in the photosystem II protein CP47 impairs photoautotrophic growth, alters the chloride requirement, and prevents photosynthesis in the absence of either PSII-O or PSII-V in Synechocystis sp. PCC 6803. Biochemistry, 38, 2707-2715.

Morgan, T. R., Shand, J. A., Clarke, S. M., & Eaton-Rye, J. J. (1998). Specific requirements for cytochrome c-550 and the manganese-stabilizing protein in photoautotrophic strains of Synechocystis sp. PCC 6803 with mutations in the domain Gly-351 to Thr-436 of the chlorophyll-binding protein CP47. Biochemistry, 37(41), 14437-14449.

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Journal - Research Other

Eaton-Rye, J. J. (2017). Assembly of the photosystem II membrane-protein complex of oxygenic photosynthesis. Frontiers in Plant Science, 8, 884. doi: 10.3389/fpls.2017.00884

Eaton-Rye, J. J. (2013). Govindjee at 80: More than 50 years of free energy for photosynthesis. Photosynthesis Research, 116(2), 111-144. doi: 10.1007/s11120-013-9921-3

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