Otago Biochemistry publications: journal articles

Eaton-Rye, J. J., Tripathy, B. C., & Sharkey, T. D. (Eds.). (2012). Photosynthesis: Plastid biology, energy conversion and carbon assimilation. New York: Springer, 856p. doi: 10.1007/978-94-007-1579-0

Morris, J., Liddy, M., & Marshall, C. J. (2024). Ice shell purification of ice-active compounds. In R. Drori & C. A. Stevens (Eds.), Ice binding proteins: Methods and protocols: Methods in molecular biology (Vol. 2730). (pp. 25-34). New York, NY: Humana Press. doi: 10.1007/978-1-0716-3503-2_2

Decourtye-Espiard, L., & Guilford, P. (2023). The chemoprevention of hereditary diffuse gastric cancer. In G. Corso, P. Veronesi & F. Roviello (Eds.), Hereditary gastric and breast cancer syndrome: CDH1: One genotype with multiple phenotypes. (pp. 321-341). Cham, Switzerland: Springer. doi: 10.1007/978-3-031-21317-5_21

Diermeier, S. D., & Leask, M. P. (2023). History and definitions of ncRNAs. In J. Sztuba-Solinska (Ed.), Navigating non-coding RNA: From biogenesis to therapeutic application. (pp. 1-46). London, UK: Academic Press. doi: 10.1016/B978-0-323-90406-3.00002-6

Kavle, R. R., Pritchard, E., Bekhit, A. E.-D. A., Carne, A., & Agyei, D. (2023). Nutrient content and functionalities of edible insects. In S. Grasso & M. Bordiga (Eds.), Edible insects processing for food and feed: From startups to mass production. (pp. 53-84). Boca Raton, FL: CRC Press. doi: 10.1201/9781003165729-4

Nolan, P., Mahmoud, A. E., Kavle, R. R., Carne, A., Bekhit, A. E.-D. A., & Agyei, D. (2023). Edible insects: Protein composition, digestibility, and biofunctionalities. In Z. F. Bhat, J. D. Morton, A. E.-D. A. Bekhit & H. A. R. Suleria (Eds.), Processing technologies and food protein digestion. (pp. 429-494). London, UK: Academic Press. doi: 10.1016/B978-0-323-95052-7.00020-0

Torbati, E., Stuart, G., Krause, K., Brown, C., & Wise, L. (2023). Methods to assess chemokine binding and anti-chemotactic activity of virus proteins. In A. R. Lucas (Ed.), Chemokine-glycosaminoglycan interactions: Methods and protocols: Methods in molecular biology (Vol. 2597). (pp. 217-234). New York, N Y: Humana Press. doi: 10.1007/978-1-0716-2835-5_16

Ahmed, I. A. M., Al-Juhaimi, F. Y., Bhat, Z. F., Carne, A., & Bekhit, A. E.-D. (2022). Non-traditional meat sources, production, nutritional and health aspects, consideration of safety aspects and religious views. In A. E.-D. A. Bekhit, W. W. Riley & M. A. Hussain (Eds.), Alternative proteins: Safety and food security considerations. (pp. 215-270). Boca Raton, FL: CRC Press. doi: 10.1201/9780429299834-8

Ahmmed, M. K., Ahmmed, F., Carne, A., Tian, H. S., & Bekhit, A. E.-D. A. (2022). Fish roe phospholipids and health: Composition, extraction, storage and brain health application. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 93-142). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00005-9

Amin, H. F., Carne, A., & Bekhit, A. E.-D. A. (2022). Fish roe products: Middle East perspective. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 283-310). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00010-2

Bekhit, A. E.-D. A., Ahmmed, M. K., Sicuro, B., Ghelichi, S., & Carne, A. (2022). Fish roe products: European perspective. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 311-341). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00012-6

Bunga, S., Carne, A., & Bekhit, A. E.-D. A. (2022). Composition and nutrition of fish roes. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 41-92). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00011-4

Irvani, N., Carne, A., Agyei, D., & Oey, I. (2022). Algae as an alternative source of protein. In A. E.-D. A. Bekhit, W. W. Riley & M. A. Hussain (Eds.), Alternative proteins: Safety and food security considerations. (pp. 65-84). Boca Raton, FL: CRC Press. doi: 10.1201/9780429299834-4

Jamieson, S. A., McMillan, H. D., & Mace, P. D. (2022). Structural and biophysical characterization of Tribbles homolog 1. In A. M. Pyle & D. W. Christianson (Eds.), Methods in enzymology (Vol. 667). (pp. 37-58). Cambridge, MA: Elsevier. doi: 10.1016/bs.mie.2022.03.023

Marsman, J., Day, R. C., & Gimenez, G. (2022). Circular chromosome conformation capture sequencing (4C-Seq ) in primary adherent cells. In J. Horsfield & J. Marsman (Eds.), Chromatin: Methods and protocols: Methods in molecular biology (Vol. 2458). (pp. 301-320). New York, NY: Springer. doi: 10.1007/978-1-0716-2140-0_16

Sarkar, D., & Diermeier, S. D. (2022). LncRNA-chromatin pull-down using biotin-conjugated DNA probes. In J. Horsfield & J. Marsman (Eds.), Chromatin: Methods and protocols: Methods in molecular biology (Vol. 2458). (pp. 345-357). New York, NY: Springer. doi: 10.1007/978-1-0716-2140-0_19

Smith, A. M., Batson, P. B., Achilleos, K., & Tamberg, Y. (2022). Collecting and culturing bryozoans for regenerative studies. In S. Blanchoud & B. Galliot (Eds.), Whole-body regeneration: Methods and protocols: Methods in molecular biology (Vol. 2450). (pp. 151-177). New York, NY: Springer. doi: 10.1007/978-1-0716-2172-1_8

Smith, J., Day, R. C., & Weeks, R. J. (2022). Next-generation bisulfite sequencing for targeted DNA methylation analysis. In J. Horsfield & J. Marsman (Eds.), Chromatin: Methods and protocols: Methods in molecular biology (Vol. 2458). (pp. 47-62). New York, NY: Springer. doi: 10.1007/978-1-0716-2140-0_3

Sollitto, M., Kenny, N. J., Greco, S., Tucci, C. F., Calcino, A. D., & Gerdol, M. (2022). Detecting structural variants and associated gene presence-absence variation phenomena in the genomes of marine organisms. In C. Verde & D. Giordano (Eds.), Marine genomics: Methods and protocols: Methods in molecular biology (Vol. 2498). (pp. 53-76). New York, NY: Springer. doi: 10.1007/978-1-0716-2313-8_4

Tantamacharik, T., Carne, A., Shavandi, A., & Bekhit, A. E.-D. A. (2022). Keratin as an alternative protein in food and nutrition. In A. E.-D. A. Bekhit, W. W. Riley & M. A. Hussain (Eds.), Alternative proteins: Safety and food security considerations. (pp. 173-214). Boca Raton, FL: CRC Press. doi: 10.1201/9780429299834-7

Verachia, W., Bekhit, A. E.-D. A., Carne, A., & Bekhit, A. A. (2022). Fish roe from sea urchin: Composition, processing, and quality aspects. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 143-181). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00002-3

Brinkman, F. S. L., Winson, G. L., Done, R. E., Filloux, A., Francis, V. I., Goldberg, J. B., … Lamont, I. L., … Welch, M. (2021). The Pseudomonas aeruginosa whole genome sequence: A 20th anniversary celebration. In R. K. Poole & D. J. Kelly (Eds.), Advances in microbial physiology. (pp. 25-88). London, UK: Elsevier. doi: 10.1016/bs.ampbs.2021.07.001

Gullo, I., Oliveira, C., van der Post, R. S., van Dieren, J. M., Davis, J. L., Bougen-Zhukov, N., Guilford, P., & Carneiro, F. (2021). Updated perspective and directions on hereditary diffuse gastric cancer. In B. Jenkins (Ed.), Research and clinical applications of targeting gastric neoplasms. (pp. 217-258). London, UK: Elsevier. doi: 10.1016/B978-0-323-85563-1.00011-3

Bredow, M., Tomalty, H. E., Graham, L. A., Gruneberg, A. K., Middleton, A. J., Vanderbeld, B., … Walker, V. K. (2020). Isolation and characterization of ice-binding proteins from higher plants. In D. K. Hincha & E. Zuther (Eds.), Plant cold acclimation: Methods and protocols: Methods in molecular biology (Vol. 2156). (2nd ed.) (pp. 303-332). New York, NY: Humana Press. doi: 10.1007/978-1-0716-0660-5_21

Cridge, A. G., Dearden, P. K., & Brownfield, L. R. (2019). The developmental hourglass in the evolution of embryogenesis. In L. N. de la Rosa & G. Müller (Eds.), Evolutionary developmental biology: A reference guide. Cham, Switzerland: Springer. doi: 10.1007/978-3-319-33038-9

Dearden, P. K. (2019). Hourglass or twisted ribbon? In W. Tworzydlo & S. M. Bilinski (Eds.), Evo-Devo: Non-model species in cell developmental biology: Results and problems in cell differentiation. (pp. 21-29). Cham, Switzerland: Springer. doi: 10.1007/978-3-030-23459-1_2

Douglass, A., & Legge, M. (2019). Regulating, surrogacy in New Zealand: Evolving policy and cautious liberalism under the HART Act. In A. Masselot & R. Powell (Eds.), Perspectives on commercial surrogacy in New Zealand: Ethics, law, policy and rights. (pp. 1-24). Christchurch, New Zealand: Centre for Commercial & Corporate Law, University of Canterbury.

Fagerlund, R. D., Ferguson, T. J., Maxwell, H. W. R., Opel-Reading, H. K., Krause, K. L., & Fineran, P. C. (2019). Reconstitution of CRISPR adaptation in vitro and its detection by PCR. In S. Bailey (Ed.), Methods in enzymology (Vol. 616: CRISPR-Cas enzymes). (pp. 411-433). Cambridge, MA: Academic Press. doi: 10.1016/bs.mie.2018.10.024

Maschio, L., Parnell, A. E., Lees, N. R., Willis, C. L., Schaffitzel, C., Stach, J. E. M., & Race, P. R. (2019). Cloning, expression, and purification of intact polyketide synthase modules. In C. Schmidt-Dannert & M. B. Quin (Eds.), Methods in enzymology: (Vol. 617): Metabolons and supramolecular enzyme assemblies. (pp. 63-82). Cambridge, MA: Academic Press. doi: 10.1016/bs.mie.2018.12.018

Shavandi, A., Hou, Y., Carne, A., McConnell, M., & Bekhit, A. E.-D. A. (2019). Marine waste utilization as a source of functional and health compounds. In F. Toldrá (Ed.), Advances in food and nutrition research (Vol. 87). (pp. 187-254). Cambridge, MA: Elsevier. doi: 10.1016/bs.afnr.2018.08.001

Basak, I., & Møller, S. G. (2018). Plant thermotolerance proteins, misfolded proteins, and neurodegenerative diseases. In A. R. Kermode & L. Jiang (Eds.), Molecular pharming: Applications, challenges, and emerging areas. (pp. 457-474). Hoboken, NJ: John Wiley & Sons. doi: 10.1002/9781118801512.ch18

Burrow, K., Young, W., Carne, A., McConnell, M., & Bekhit, A. E.-D. (2018). Interactions of milk proteins with minerals. In G. W. Smithers (Ed.), Reference module in food science. Elsevier. doi: 10.1016/B978-0-08-100596-5.22489-X

Ehrhardt, M. K. G., Warring, S. L., & Gerth, M. L. (2018). Screening chemoreceptor-ligand interactions by high-throughput thermal-shift assays. In M. D. Manson (Ed.), Bacterial chemosensing: Methods and protocols: Methods in molecular biology (Vol. 1729). (pp. 281-290). New York, NY: Humana Press. doi: 10.1007/978-1-4939-7577-8_22

Mungure, T. E., Bekhit, A. E.-D., Carne, A., Roohinejad, S., Mallikarjunan, K., & Birch, J. (2018). Application of HPLC in characterisation of triacylglycerols and detection of adulteration in cold pressed seed oils. In G. W. Smithers (Ed.), Reference module in food science. Elsevier. doi: 10.1016/B978-0-08-100596-5.22526-2

Tantamacharik, T., Carne, A., Agyei, D., Birch, J., & Bekhit, A. E.-D. A. (2018). Use of plant proteolytic enzymes for meat processing. In M. G. Guevara & G. R. Daleo (Eds.), Biotechnological applications of plant proteolytic enzymes. (pp. 43-67). Cham, Switzerland: Springer. doi: 10.1007/978-3-319-97132-2_3

Weller, J. L., & Macknight, R. C. (2018). Functional genomics and flowering time in Medicago truncatula: An overview. In L. A. Cañas & J. P. Beltrán (Eds.), Functional genomics in Medicago truncatula: Methods and protocols: Methods in molecular biology (Vol. 1822). (pp. 261-271). New York, NY: Humana Press. doi: 10.1007/978-1-4939-8633-0_17

Bekhit, A. E.-D. A., Carne, A., Ryder, K., Ha, M., & Kong, L. (2017). Manipulation of meat structure: Use of exogenous proteases. In A. E.-D. A. Bekhit (Ed.), Advances in meat processing technology. (pp. 65-120). Boca Raton, FL: CRC Press. doi: 10.1201/9781315371955

Bekhit, A. E.-D. A., Suwandy, V., Carne, A., Mohamed Ahmed, I. A., & Wang, Z. (2017). Manipulation of meat quality: Electrical stimulation and pulsed electric field. In A. E.-D. A. Bekhit (Ed.), Advances in meat processing technology. (pp. 121-168). Boca Raton, FL: CRC Press. doi: 10.1201/9781315371955

Chatterjee, A., Rodger, E. J., Morison, I. M., Eccles, M. R., & Stockwell, P. A. (2017). Tools and strategies for analysis of genome-wide and gene-specific DNA methylation patterns. In G. J. Seymour, M. P. Cullinan & N. C. K. Heng (Eds.), Oral biology: Molecular techniques and applications: Methods in molecular biology (Vol. 1537). (2nd ed.) (pp. 249-277). New York, NY: Springer. doi: 10.1007/978-1-4939-6685-1_15

Chatterjee, A., Rodger, E. J., Stockwell, P. A., Le Mée, G., & Morison, I. M. (2017). Generating multiple base-resolution DNA methylomes using reduced representation bisulfite sequencing. In G. J. Seymour, M. P. Cullinan & N. C. K. Heng (Eds.), Oral biology: Molecular techniques and applications: Methods in molecular biology (Vol. 1537). (2nd ed.) (pp. 279-298). New York, NY: Springer. doi: 10.1007/978-1-4939-6685-1_16

Chia, J., Burrow, K., Carne, A., McConnell, M., Samuelsson, L., Day, L., … Bekhit, A. E.-D. A. (2017). Minerals in sheep milk. In R. R. Watson, R. J. Collier & V. R. Preedy (Eds.), Nutrients in dairy and their implications for health and disease. (pp. 345-362). London, UK: Elsevier. doi: 10.1016/B978-0-12-809762-5.00027-9

Chisnall, M., & Macknight, R. (2017). Importance of Vitamin C in human health and disease. In M. A. Hossain, S. Munné-Bosch, D. J. Burritt, P. Diaz-Vivancos, M. Fujita & A. Lorence (Eds.), Ascorbic Acid in Plant Growth, Development and Stress Tolerance. (pp. 491-501). Cham, Switzerland: Springer. doi: 10.1007/978-3-319-74057-7

Cridge, A., Harrop, T., Lovegrove, M., Remnant, E., & Dearden, P. (2017). Nutrition and epigenetic change in insects: Evidence and implications. In H. Verlinden (Ed.), Advances in insect physiology (Vol. 53): Insect epigenetics. (pp. 31-54). London, UK: Academic Press. doi: 10.1016/bs.aiip.2017.06.001

Fitzgerald, R. P., & Legge, M. (2017). Ethics for embryologists. In R. M. Shaw (Ed.), Bioethics beyond altruism: Donating and transforming human biological materials. (pp. 141-164). Cham, Switzerland: Palgrave Macmillan. doi: 10.1007/978-3-319-55532-4_6

Peters, B., Aidley, J., Cadzow, M., Twell, D., & Brownfield, L. (2017). Identification of cis-regulatory modules that function in the male germline of flowering plants. In A. Schmidt (Ed.), Plant germline development: Methods and protocols: Methods in molecular biology (Vol. 1669). (pp. 275-293). Springer. doi: 10.1007/978-1-4939-7286-9_22

Twell, D., & Brownfield, L. (2017). Analysis of fluorescent reporter activity in the male germline during pollen development by confocal microscopy. In A. Schmidt (Ed.), Plant germline development: Methods and protocols: Methods in molecular biology (Vol. 1669). (pp. 67-75). Springer. doi: 10.1007/978-1-4939-7286-9_6

Weijman, J. F., Riedl, S. J., & Mace, P. D. (2017). Structural studies of ERK2 protein complexes. In G. Jimenez (Ed.), ERK signaling: Methods and protocols: Methods in molecular biology (Vol: 1487). (pp. 53-63). New York, NY: Springer. doi: 10.1007/978-1-4939-6424-6_4

Brownfield, L., & Twell, D. (2016). Plant Reproduction. In eLS. Chichester, UK: John Wiley & Sons. doi: 10.1002/9780470015902.a0002046.pub2

Reid, S., Chan, L. C. L., Matindoost, L., Pushparajan, C., & Visnovsky, G. (2016). Cell culture for production of insecticidal viruses. In T. R. Glare & M. E. Moran-Diez (Eds.), Microbial-based biopesticides: Methods and protocols: Methods in molecular biology (Vol. 1477). (pp. 95-117). New York: Springer. doi: 10.1007/978-1-4939-6367-6_9

Biswas, A., Fineran, P. C., & Brown, C. M. (2015). Computational detection of CRISPR/crRNA targets. In M. Lundgren, E. Charpentier & P. C. Fineran (Eds.), CRISPR: Methods in molecular biology (Vol. 1311). (pp. 77-89). New York, NY: Humana Press. doi: 10.1007/978-1-4939-2687-9_5

Empson, R. M., Tantirigama, M. L. S., Oswald, M. J., Hughes, S. M., & Knöpfel, T. (2015). Combined immunochemistry and live imaging of fluorescent protein expressing neurons in mouse brain. In A. Merighi & L. Lossi (Eds.), Immunocytochemistry and related techniques. (pp. 357-373). New York: Springer. doi: 10.1007/978-1-4939-2313-7_19

Poulter, R. T. M., & Butler, M. I. (2015). Tyrosine recombinase retrotransposons and transposons. In N. L. Craig, M. Chandler, M. Gellert, A. M. Lambowitz, P. A. Rice & S. B. Sandmeyer (Eds.), Mobile DNA III. (pp. 1271-1291). Washington, DC: ASM Press.

Copp, J. N., Hanson-Manful, P., Ackerley, D. F., & Patrick, W. M. (2014). Error-prone PCR and effective generation of gene variant libraries for directed evolution. In E. M. J. Gillam, J. N. Copp & D. F. Ackerley (Eds.), Directed evolution library creation: Methods and protocols. (2nd ed.) (pp. 3-22). New York: Springer. doi: 10.1007/978-1-4939-1053-3_16

Day, R., & Macknight, R. (2014). Screening for imprinted genes using high-resolution melting analysis of PCR amplicons. In C. Spillane & P. C. McKeown (Eds.), Plant epigentics and epigenomics: Methods and protocols. (pp. 71-83). Humana Press. doi: 10.1007/978-1-62703-773-0_5

Hill, R. E., & Eaton-Rye, J. J. (2014). Plasmid Construction by SLIC or Sequence and Ligation-Independent Cloning. In S. Valla & R. Lale (Eds.), DNA cloning and assembly methods: Methods in molecular biology (Vol. 1116). (pp. 25-36). New York: Humana. doi: 10.1007/978-1-62703-764-8_2

Mace, P. D., Riedl, S. J., & Salvesen, G. S. (2014). Caspase enzymology and activation mechanisms. In A. Ashkenasi, J. Yuan & J. A. Wells (Eds.), Methods in enzymology: Regulated cell death Part A: Apoptotic mechanisms (Vol.544). (pp. 161-178). San Diego, CA: Academic Press. doi: 10.1016/b978-0-12-417158-9.00007-8

Middleton, A. J., Budhidarmo, R., & Day, C. L. (2014). Use of E2~ubiquitin conjugates for the characterization of ubiquitin transfer by RING E3 ligases such as the inhibitor of apoptosis proteins. In A. Ashkenazi, J. A. Wells & J. Yuan (Eds.), Methods in enzymology (Vol. 545). (pp. 243-263). San Diego, CA: Elsevier. doi: 10.1016/B978-0-12-801430-1.00010-X

Middleton, A. J., Vanderbeld, B., Bredow, M., Tomalty, H., Davies, P. L., & Walker, V. K. (2014). Isolation and characterization of ice-binding proteins from higher plants. In D. K. Hincha & E. Zuther (Eds.), Plant cold acclimation: Methods and Protocols (Methods in Molecular Biology: Vol. 1166). (pp. 255-277). New York: Springer. doi: 10.1007/978-1-4939-0844-8_19

Najafpour, M. M., Sedigh, D. J., Eaton-Rye, J. J., & Allakhverdiev, S. I. (2014). The water-oxidizing complex in Photosystem II. In S. I. Allakhverdiev, A. B. Rubin & V. A. Shuvalov (Eds.), Contemporary problems of photosynthesis (Vol. 1). (pp. 325-341). Moscow, Russia: Izhevsk Institute of Computer Science.

Osborne, A. J., Duncan, E. J., Cridge, A. G., & Dearden, P. K. (2014). Epigenetics and the maternal germline. In T. Tollefsbol (Ed.), Transgenerational epigenetics: Evidence and debate. (pp. 27-41). London, UK: Academic Press. doi: 10.1016/B978-0-12-405944-3.00004-0

Patrick, W. M., & Gerth, M. L. (2014). ITCHY: Incremental Truncation for the Creation of Hybrid Enzymes. In E. M. J. Gillam, J. N. Copp & D. F. Ackerley (Eds.), Directed evolution library creation: Methods and protocols. (2nd ed.) (pp. 225-244). New York: Springer. doi: 10.1007/978-1-4939-1053-3_16

Sharpe, M. L., Hastings, J. W., & Krause, K. L. (2014). Luciferases and light-emitting accessory proteins: Structural biology. In eLS. Chichester, UK: John Wiley & Sons. doi: 10.1002/9780470015902.a0003064.pub2

Stevens, S. G., & Brown, C. M. (2014). Bioinformatic methods to discover Cis-regulatory elements in mRNAs. In N. K. Kasabov (Ed.), Springer handbook of bio-/neuro-informatics. (pp. 151-169). Dordrecht, The Netherlands: Springer. doi: 10.1007/978-3-642-30574-0_10

Bekhit, A. E., Hopkins, D. L., Farouk, M. M., & Carne, A. (2013). Interventions to improve the tenderness of fresh meat: A future prospect for camel meat research. In I. T. Kadim, O. Mahgoub, B. Faye & M. Farouk (Eds.), Camel meat and meat products. (pp. 153-185). Oxford, UK: CABI.

Hanson-Manful, P., & Patrick, W. M. (2013). Construction and analysis of randomized protein-encoding libraries using error-prone PCR. In J. A. Gerrard (Ed.), Protein nanotechnology: Protocols, instrumentation, and applications. (2nd ed.) (pp. 251-267). Humana Press. doi: 10.1007/978-1-62703-354-1-15

Merriman, T. R., & Flynn, T. J. (2013). Molecular genetics of hyperuricaemia and gout. In eLS. Chichester: John Wiley & Sons. doi: 10.1002/9780470015902.a0025153

Merriman, T. R., & McKinney, C. (2013). An update on the genetic causes of hyperuricemia and gout. In N. Dalbeth, F. Perez-Ruiz & N. Schlesinger (Eds.), Gout. (pp. 54-69). London, UK: Future Medicine. doi: 10.2217/ebo.12.256

Picard, K., Lee, R., Hellens, R., & Macknight, R. (2013). Transient gene expression in Medicago truncatula leaves via agroinfiltration. In R. J. Rose (Ed.), Legume genomics: Methods and protocols: Methods in molecular biology (Vol. 1069). (pp. 215-226). New York: Springer. doi: 10.1007/978-1-62703-613-9_15

Macknight, R. C., Herridge, R. P., & Day, R. C. (2012). Using transcriptomics to reveal gene networks of seed development in Arabidopsis. In G. K. Agrawal & R. Rakwal (Eds.), Seed development: OMICS technologies toward Improvement of seed quality and crop yield. (pp. 99-110). Dordrecht, The Netherlands: Springer. doi: 10.1007/978-94-007-4749-4_6

McConnell, I. L., Eaton-Rye, J. J., & van Rensen, J. J. S. (2012). Regulation of Photosystem II electron transport by bicarbonate. In J. J. Eaton-Rye, B. C. Tripathy & T. D. Sharkey (Eds.), Photosynthesis: Plastid biology, energy conversion and carbon assimilation. (pp. 475-500). New York: Springer. doi: 10.1007/978-94-007-1579-0

Collins, L. J., Schönfeld, B., & Chen, X. S. (2011). The epigenetics of non-coding RNA. In T. Tollefsbol (Ed.), Handbook of epigenetics: The new molecular and medical genetics. (pp. 49-61). London: Academic Press. doi: 10.1016/B978-0-12-375709-8.00004-6

Daly, T., Chen, X. S., & Penny, D. (2011). How old are RNA networks? In L. J. Collins (Ed.), RNA infrastructure and networks: Advances in experimental medicine and biology (Vol. 722). (pp. 255-273). New York: Springer Science+Business Media. doi: 10.1007/978-1-4614-0332-6

Day, R. C. (2010). Laser microdissection of paraffin-embedded plant tissues for transcript profiling. In L. Hennig & C. Köhler (Eds.), Plant developmental biology: Methods and protocols. (pp. 321-346). New York: Spinger. doi: 10.1007/978-1-60761-765-5_22

Dearden, P. K., Duncan, E. J., & Wilson, M. J. (2010). The honeybee Apis mellifera. In Emerging model organisms: A laboratory manual (Vol. 2). (pp. 223-246). Cold Spring Harbor, NY: Cold Spring Harbor Press.

Eaton-Rye, J. (2010). Construction of gene interruptions and gene deletions in the cyanobacterium Synechocystis sp. strain PCC 6803. In R. Carpentier (Ed.), Photosynthesis Research Protocols. (2nd ed.) (pp. 295-312). NY: Springer. doi: 10.1007/978-1-60761-925-3_22

von Zychlinski, A., & Gruissem, W. (2009). Preparation and analysis of plastid proteomes by 2DE. In D. Sheehan & R. Tyther (Eds.), Two-dimensional electrophoresis protocols: Methods in molecular biology (Vol. 519). (pp. 205-220). Totowa, NJ: Humana Press. doi: 10.1007/978-1-59745-281-6_13

von Zychilinski, A., Reiland, S., Gruissem, W., & Baginsky, S. (2008). Etioplast. In G. K. Agrawal & R. Rakwal (Eds.), Plant Proteomics: Technologies, strategies, and applications. (pp. 351-360). Hoboken, NJ: John Wiley & Sons. doi: 10.1002/9780470369630.ch24

Hastings, J. W., & Krause, K. L. (2006). Luciferases and light-emitting accessory proteins: Structural biology. In Encyclopedia of Life Sciences. New York: John Wiley & Sons. doi: 10.1038/npg.els.0003064

Tate, W. P., & Marshall, C. J. (2018). Post-dormancy transcription and translation in the brine shrimp. In R. A. Browne, P. Sorgeloos & C. N. A. Trotman (Eds.), Artemia biology. (pp. 21-36). Boca Raton, FL: Taylor & Francis. doi: 10.1201/9781351069892

Eaton-Rye, J. J. (2012). Contributions of Govindjee, 1970-1999. In J. J. Eaton-Rye, B. C. Tripathy & T. D. Sharkey (Eds.), Photosynthesis: Plastid biology, energy conversion and carbon assimilation. New York: Springer. doi: 10.1007/978-94-007-1579-0

Hastings, J. W., & Krause, K. L. (2007). Luciferases and light-emitting accessory proteins: Structural biology. In Encyclopedia of Life Sciences. New York: John Wiley & Sons.

Arshad, F., & Eaton-Rye, J. J. (2024). Indirect interactions involving the PsbM or PsbT subunits and the PsbO, PsbU and PsbV proteins stabilize assembly and activity of Photosystem II in Synechocystis sp. PCC 6803. Photosynthesis Research. Advance online publication. doi: 10.1007/s11120-024-01091-9

Barzak, F. M., Lu, A., Geltzeiler, A. R., Ledgerwood, E. C., Chung, W. K., & Day, C. L. (2024). A novel RNF125 variant associated with Tenorio syndrome alters ubiquitin chain binding. Clinical Genetics, 105, 254-261. doi: 10.1111/cge.14457

Bilton, T. P., Sharma, S. K., Schofield, M. R., Black, M. A., Jacobs, J. M. E., Bryan, G. J., & Dodds, K. G. (2024). Construction of relatedness matrices in autopolyploid populations using low-depth high-throughput sequencing data. Theoretical & Applied Genetics, 137, 64. doi: 10.1007/s00122-024-04568-2

Chin, T. C., Wilbanks, S. M., & Ledgerwood, E. C. (2024). Altered conformational dynamics contribute to species-specific effects of cytochrome c mutations on caspase activation. Journal of Biological Inorganic Chemistry. Advance online publication. doi: 10.1007/s00775-024-02044-2

Chinzowu, T., Chyou, T.-y., & Nishtala, P. S. (2024). Antibiotic-associated acute kidney injury among older adults: A case-crossover study. Clinical Drug Investigation. Advance online publication. doi: 10.1007/s40261-023-01339-7

Currie, M. J., Davies, J. S., Scalise, M., Gulati, A., Wright, J. D., Newton-Vesty, M. C., … Mace, P. D., … North, R. A. (2024). Structural and biophysical analysis of a Haemophilus influenzae tripartite ATP-independent periplasmic (TRAP) transporter. eLIFE, 13, RP92307. doi: 10.7554/eLife.92307

Forsman, J. A., Sheridan, K. J., Singh, H., Brown, T. J., Vass, I., Summerfield, T. C., & Eaton-Rye, J. J. (2024). The Psb27 assembly factor and histidine-252 of the D1 protein modify energy transfer to photosystem II in Synechocystis sp. PCC 6803. Physiologia Plantarum, 176, e14154. doi: 10.1111/ppl.14154

Garelja, M. L., Alexander, T. I., Bennie, A., Nimick, M., Petersen, J., Walker, C. S., & Hay, D. L. (2024). Pharmacological characterisation of erenumab, Aimovig, at two calcitonin gene-related peptide responsive receptors. British Journal of Pharmacology, 181, 142-161. doi: 10.1111/bph.16218

Inwood, S. N., Harrop, T. W. R., Shields, M. W., Goldson, S. L., & Dearden, P. K. (2024). Immune system modulation & virus transmission during parasitism identified by multi-species transcriptomics of a declining insect biocontrol system. BMC Genomics, 25, 311. doi: 10.1186/s12864-024-10215-3

Jo, J., Upadhyay, T., Woods, E. C., Park, K. W., Pedowitz, N. J., Jaworek-Korjakowska, J., … Fellner, M., & Bogyo, M. (2024). Development of oxadiazolone activity-based probes targeting FphE for specific detection of Staphylococcus aureus infections. Journal of the American Chemical Society. Advance online publication. doi: 10.1021/jacs.3c13974

Jones, L. M., & Legge, M. (2024). Can the use of triglyceride to glucose and triglyceride to high density lipoprotein ratios indicate metabolic syndrome in the spinal cord injured male? New Zealand Journal of Medical Laboratory Science, 78(1), 31-33.

McCallum-Loudeac, J., Moody, E., Williams, J., Johnstone, G., Sircombe, K. J., Clarkson, A. N., & Wilson, M. J. (2024). Deletion of a conserved genomic region associated with adolescent idiopathic scoliosis leads to vertebral rotation in mice. Human Molecular Genetics. Advance online publication. doi: 10.1093/hmg/ddae011

Moore, M. K., Jones, G. T., McCormick, S., Williams, M. J. A., & Coffey, S. (2024). Association between lipoprotein(a), LPA genetic risk score, aortic valve disease, and subsequent major adverse cardiovascular events. European Journal of Preventive Cardiology. Advance online publication. doi: 10.1093/eurjpc/zwae100

Rajchakit, U., Lamba, S., Wang, K., Lyons, N., Lu, J., Swift, S., Pletzer, D., & Sarojini, V. (2024). Size-controlled synthesis of gold nanoparticles tethering antimicrobial peptides with potent broad-spectrum antimicrobial and antibiofilm activities. Molecular Pharmaceutics. Advance online publication. doi: 10.1021/acs.molpharmaceut.3c00734

Schoch, K., Ruegg, M. S. G., Fellows, B. J., Cao, J., Uhrig, S., Einsele-Scholz, S., … Hawarden, S. R. A., … Brown, C. M., … Bicknell, L. S. (2024). A second hotspot for pathogenic exon-skipping variants in CDC45. European Journal of Human Genetics. Advance online publication. doi: 10.1038/s41431-024-01583-1

Shafaei Pishabad, Z., & Ledgerwood, E. C. (2024). The Y49H cytochrome c variant enhances megakaryocytic maturation of K-562 cells. Biochimica et Biophysica Acta: Molecular Basis of Disease, 1870(5), 167134. doi: 10.1016/j.bbadis.2024.167134

Sheridan, K. J., Eaton-Rye, J. J., & Summerfield, T. C. (2024). Mutagenesis of Ile184 in the cd-loop of the photosystem II D1 protein modifies acceptor-side function via spontaneous mutation of D1-His252 in Synechocystis sp. PCC 6803. Biochemical & Biophysical Research Communications, 702, 149595. doi: 10.1016/j.bbrc.2024.149595

Sitter, L., Schoof, M., Glare, T. R., Cox, M. P., Fineran, P. C., Gardner, P. P., & Hurst, M. R. H. (2024). Serratia-based toxin cluster elements are associated with a type I fimbria. MicrobiologyOpen, 13, e1395. doi: 10.1002/mbo3.1395

Swamynathan, M. M., Mathew, G., Aziz, A. A., Gordon, C., Hillowe, A., Wang, H., … Diermeier, S. D., … Trotman, L. C. (2024). FABP5 inhibition against PTEN-mutant therapy resistant prostate cancer. Cancers, 16, 60. doi: 10.3390/cancers16010060

Achilleos, K., & Smith, A. M. (2023). Proof of concept for measuring growth of shelf marine calcifiers: 'A Bryozoan odyssey'. Marine & Freshwater Research, 74(14), 1262-1273. doi: 10.1071/MF23114

Adhikari, P. B., Zhu, S., Liu, X., Huang, C., Xie, L., Wu, X., … Peters, B., Brownfield, L., … Kasahara, R. D. (2023). Discovery of a cis-regulatory element SaeM involved in dynamic regulation of synergid-specific MYB98. Frontiers in Plant Science, 14, 1177058. doi: 10.3389/fpls.2023.1177058

Ahmmed, M. K., Hachem, M., Ahmmed, F., Rashidinejad, A., Oz, F., Bekhit, A. A., Carne, A., & Bekhit, A. E.-D. A. (2023). Marine fish-derived lysophosphatidylcholine: Properties, extraction, quantification, and brain health application. Molecules, 28(7), 3088. doi: 10.3390/molecules28073088

Bailey, S., Guhlin, J., Senanayake, D. S., Scherer, P., Brekke, P., Ewen, J. G., Santure, A. W., & Whibley, A. (2023). Assembly of female and male hihi genomes (stitchbird; Notiomystis cincta) enables characterization of the W chromosome and resources for conservation genomics. Molecular Ecology Resources. Advance online publication. doi: 10.1111/1755-0998.13823

Barzegar-Fallah, A., Alimoradi, H., Dunlop, J. L., Torbati, E., & Baird, S. K. (2023). Serotonin type-3 receptor antagonists selectively kill melanoma cells through classical apoptosis, microtubule depolymerisation, ERK activation, and NF-κB downregulation. Cell Biology & Toxicology, 39, 1119-1135. doi: 10.1007/s10565-021-09667-0

Basak, I., Harfoot, R., Palmer, J. E., Kumar, A., Quiñones‑Mateu, M. E., Schweitzer, L., & Hughes, S. M. (2023). Neuroproteomic analysis after SARS-CoV-2 infection reveals overrepresented neurodegeneration pathways and disrupted metabolic pathways. Biomolecules, 13(11), 1597. doi: 10.3390/biom13111597

Brandon, R., Jiang, Y., Yeu, R. Q., Tweedie-Cullen, R., Smallman, K., Doherty, G., … Leask, M. P., Merriman, T. R., … Murphy, R. (2023). Stratified glucose-lowering response to vildagliptin and pioglitazone by obesity and hypertriglyceridemia in a randomized crossover trial. Frontiers in Endocrinology, 13, 1091421. doi: 10.3389/fendo.2022.1091421

Brůna, T., Li, H., Guhlin, J., Honsel, D., Herbold, S., Stanke, M., … Hoff, K. J. (2023). GALBA: Genome annotation with miniprot and AUGUSTUS. BMC Bioinformatics, 24, 327. doi: 10.1186/s12859-023-05449-z

Bunga, S. J., Ahmmed, M. K., Lawley, B., Carne, A., & Bekhit, A. E.-D. A. (2023). Physicochemical, biochemical and microbiological changes of jeotgal-like fermented Chinook salmon (Oncorhynchus tshawytscha) roe. Food Chemistry, 398, 133880. doi: 10.1016/j.foodchem.2022.133880

Bunga, S., Ahmmed, M. K., Carne, A., & Bekhit, A. E.-D. A. (2023). Positional distribution of fatty acids in processed Chinook salmon roe lipids determined by ¹³C magnetic resonance spectroscopy (NMR). Molecules, 28, 454. doi: 10.3390/molecules28010454

Carlson, J. C., Krishnan, M., Rosenthal, S. L., Russell, E. M., Zhang, J. Z., Hawley, N. L., Moors, J., … Stamp, L. K., … Merriman, T. R., … Minster, R. L. (2023). A stop-gain variant in BTNL9 is associated with atherogenic lipid profiles. Human Genetics & Genomic Advances, 4, 100155. doi: 10.1016/j.xhgg.2022.100155

Cooper, H. B., Krause, K. L., & Gardner, P. P. (2023). Finding priority bacterial ribosomes for future structural and antimicrobial research based upon global RNA and protein sequence analysis. PeerJ, 11, e14969. doi: 10.7717/peerj.14969

Cullen, G., Gilligan, J. B., Guhlin, J. G., & Dearden, P. K. (2023). Germline progenitors and oocyte production in the honeybee queen ovary. Genetics. Advance online publication. doi: 10.1093/genetics/iyad138

Das, A., Foglizzo, M., Padala, P., Zhu, J., & Day, C. L. (2023). TRAF trimers form immune signalling networks via RING domain dimerization. FEBS Letters, 597(9), 1213-1224. doi: 10.1002/1873-3468.14530

Davies, J. S., Currie, M. J., North, R. A., Scalise, M., Wright, J. D., Copping, J. M., … Jamieson, S. A., … Mace, P. D., & Dobson, R. C. J. (2023). Structure and mechanism of a tripartite ATP-independent periplasmic TRAP transporter. Nature Communications, 14(1), 1120. doi: 10.1038/s41467-023-36590-1

Digby, A., Eason, D., Catalina, A., Lierz, M., Galla, S., Urban, L., Le Lec, M. F., Guhlin, J., Steeves, T. E., Dearden, P. K., … Kākāpō Recovery Team. (2023). Hidden impacts of conservation management on fertility of the critically endangered kākāpō. PeerJ, 11, e14675. doi: 10.7717/peerj.14675

Dong, Y., Gupta, S., Wargent, J. J., Putterill, J., Macknight, R. C., Gechev, T. S., … Dijkwel, P. P. (2023). Comparative transcriptomics of multi-stress responses in Pachycladon cheesemanii and Arabidopsis thaliana. International Journal of Molecular Sciences, 24, 11323. doi: 10.3390/ijms241411323

Elsaid, K., Merriman, T. R., Rossitto, L.-A., Liu-Bryan, R., Karsh, J., Phipps-Green, A., … Cadzow, M., … Terkeltaub, R. (2023). Amplification of inflammation by lubricin deficiency implicated in incident, erosive gout independent of hyperuricemia. Arthritis & Rheumatology, 75(5), 794-805. doi: 10.1002/art.42413

Erdmann, M. B., Gardner, P. P., & Lamont, I. L. (2023). The PitA protein contributes to colistin susceptibility in Pseudomonas aeruginosa. PLoS ONE, 18(10), e0292818. doi: 10.1371/journal.pone.0292818

Eruera, A.-R., McSweeney, A. M., McKenzie-Goldsmith, G. M., Opel-Reading, H. K., Thomas, S. X., Campbell, A. C., … Ward, V. K., & Krause, K. L. (2023). Crystal structure of inhibitor-bound GII.4 Sydney 2012 norovirus 3C-like protease. Viruses, 15(11), 2202. doi: 10.3390/v15112202

Fellner, M., Walsh, A., Dela Ahator, S., Aftab, N., Sutherland, B., Tan, E. W., … Lentz, C. S. (2023). Biochemical and cellular characterization of the function of fluorophosphonate-binding hydrolase H (FphH) in Staphylococcus aureus support a role in bacterial stress response. ACS Infectious Diseases. Advance online publication. doi: 10.1021/acsinfecdis.3c00246

Fitzgerald, S., Blenkiron, C., Stephens, R., Mathy, J. A., Somers-Edgar, T., Rolfe, G., … Jackson, C., Eccles, M., … Rodger, E., … Guilford, P., … Print, C. G. (2023). Dynamic ctDNA mutational complexity in patients with melanoma receiving immunotherapy. Molecular Diagnosis & Therapy. Advance online publication. doi: 10.1007/s40291-023-00651-4

Gao, Y., Carne, A., Young, W., Burrow, K., Naji, S., Fraser-Miller, S. J., Gordon, K. C., & Bekhit, A. E.-D. A. (2023). Effect of consumption of sheep and cow milk on rat brain fatty acid and phospholipid composition. Food Chemistry. Advance online publication. doi: 10.1016/j.foodchem.2023.138056

Greenhough, H., Vignier, J., Peychers, C., Smith, K. F., Kenny, N. J., & Rolton, A. (2023). Exposure to Alexandrium spp. impairs the development of green-lipped mussel (Perna canaliculus) embryos and larvae. Harmful Algae, 127, 102465. doi: 10.1016/j.hal.2023.102465

Guhlin, J., Le Lec, M. F., Wold, J., Koot, E., Winter, D., Biggs, P. J., … Urban, L., Foster, Y., … Robertson, F. E., Robertson, B. C., Gemmell, N. J., … Dearden, P. K. (2023). Species-wide genomics of kākāpō provides tools to accelerate recovery. Nature Ecology & Evolution. Advance online publication. doi: 10.1038/s41559-023-02165-y

Han, L., Li, R., Lu, J., Ren, W., Ning, C., Pang, J., … Merriman, T. R., & Li, C. (2023). Association of the quantity, duration, and type of alcohol consumption on the development of gouty tophi. Arthritis Care & Research, 75(5), 1079-1087. doi: 10.1002/acr.24968

Hao, F., Liu, X., Zhou, B., Tian, Z., Zhou, L., Zong, H., … Macknight, R. C., … Cai, J. (2023). Chromosome-level genomes of three key Allium crops and their trait evolution. Nature Genetics, 55, 1976-1986. doi: 10.1038/s41588-023-01546-0

Harris, C., Hall, M., Arrowfield, R., Herridge, R., Eady, C., Macknight, R., & Brownfield, L. (2023). Assessing inbreeding in perennial ryegrass (Lolium perenne) as a step towards F1 hybrid breeding. Plant Breeding. Advance online publication. doi: 10.1111/pbr.13099

Inwood, S. N., Skelly, J., Guhlin, J. G., Harrop, T. W. R., Goldson, S. L., & Dearden, P. K. (2023). Chromosome-level genome assemblies of two parasitoid biocontrol wasps reveal the parthenogenesis mechanism and an associated novel virus. BMC Genomics, 24, 440. doi: 10.1186/s12864-023-09538-4

Inwood, S., Harrop, T. W. R., & Dearden, P. K. (2023). The venom composition and parthenogenesis mechanism of the parasitoid wasp Microctonus hyperodae, a declining biocontrol agent. Insect Biochemistry & Molecular Biology, 153, 103897. doi: 10.1016/j.ibmb.2022.103897

Irvani, N., Leong, S. Y., Carne, A., Agyei, D., & Oey, I. (2023). Impact of high-speed homogenisation followed by pH treatment of Arthrospira platensis on protein accessibility and in vitro protein digestibility. Food & Bioprocess Technology. Advance online publication. doi: 10.1007/s11947-023-03269-w

Jeunen, G.-J., Cane, J. S., Ferreira, S., Strano, F., von Ammon, U., Cross, H., Day, R., … Ellis, K., Urban, L., Pearson, N., Olmedo-Rojas, P., Kardailsky, A., Gemmell, N. J., & Lamare, M. (2023). Assessing the utility of marine filter feeders for environmental DNA (eDNA) biodiversity monitoring. Molecular Ecology Resources. Advance online publication. doi: 10.1111/1755-0998.13754

Joshi, A. D., McCormick, N., Yokose, C., Yu, B., Tin, A., Terkeltaub, R., Merriman, T. R., … Choi, H. K. (2023). Pre-diagnostic glycoprotein acetyl levels and incident and recurrent flare risk, accounting for serum urate levels: A population-based, prospective study and Mendelian randomization analysis. Arthritis & Rheumatology, 42523. Advance online publication. doi: 10.1002/art.42523

Kavle, R. R., Nolan, P. J., Bekhit, A. E.-D. A., Carne, A., Morton, J. D., & Agyei, D. (2023). Physicochemical characteristics, techno-functionalities, and amino acid profile of Prionoplus reticularis (Huhu) larvae and pupae protein extracts. Foods, 12, 417. doi: 10.3390/foods12020417

Kavle, R. R., Nolan, P. J., Carne, A., Agyei, D., Morton, J. D., & Bekhit, A. E.-D. A. (2023). Earth worming: An evaluation of earthworm (Eisenia andrei) as an alternative food source. Foods, 12, 1948. doi: 10.3390/foods12101948

Kavle, R. R., Pritchard, E. T. M., Carne, A., Bekhit, A. E.-D. A., & Agyei, D. (2023). Fatty acid profile, mineral composition, and health implications of consuming dried sago grubs (Rhynchophorus ferrugineus). Applied Sciences, 13, 363. doi: 10.3390/app13010363

Kavle, R. R., Pritchard, E. T. M., Carne, A., Bekhit, A. E.-D. A., Morton, J. D., & Agyei, D. (2023). Nutritional composition and techno-functional properties of sago palm weevil (Rhynchophorus ferrugineus) larvae protein extract. Journal of Asia-Pacific Entomology, 26, 102086. doi: 10.1016/j.aspen.2023.102086

Keighley, L. M., Lynch-Sutherland, C. F., Almomani, S. N., Eccles, M. R., & Macaulay, E. C. (2023). Unveiling the hidden players: The crucial role of transposable elements in the placenta and their potential contribution to pre-eclampsia. Placenta. Advance online publication. doi: 10.1016/j.placenta.2023.05.017

Khaing, E. P., & Eaton-Rye, J. J. (2023). Lys264 of the D2 protein performs a dual role in Photosystem II modifying assembly and electron transfer through the quinone–iron acceptor complex. Biochemistry, 62, 2738-2750. doi: 10.1021/acs.biochem.3c00240

Krishnan, M., Phipps-Green, A., Russell, E. M., Major, T. J., Cadzow, M., Stamp, L. K., Dalbeth, N., … Merriman, T. R., … Weeks, D. E. (2023). Association of rs9939609 in FTO with BMI among Polynesian peoples living in Aotearoa New Zealand and other Pacific nations. Journal of Human Genetics. Advance online publication. doi: 10.1038/s10038-023-01141-5

Le Lievre, L., Padinjare Chakkatu, S., Varghese, S., Day, R. C., Pilkington, S. M., & Brownfield, L. (2023). RNA-seq analysis of synchronized developing pollen isolated from a single anther. Frontiers in Plant Science, 14, 1121570. doi: 10.3389/fpls.2023.1121570

Lin, K., McCormick, N., Yokose, C., Joshi, A. D., Lu, N., Curhan, G. C., Merriman, T. R., … Choi, H. K. (2023). Interactions between genetic risk and diet influencing risk of incident female gout: Discovery and replication analysis of four prospective cohorts. Arthritis & Rheumatology, 75(6), 1028-1038. doi: 10.1002/art.42419

Lovegrove, M. R., Dearden, P. K., & Duncan, E. J. (2023). Honeybee queen mandibular pheromone induces a starvation response in Drosophila melanogaster. Insect Biochemistry & Molecular Biology, 154, 103908. doi: 10.1016/j.ibmb.2023.103908

Mandal, A. K., Leask, M. P., Sumpter, N. A., Choi, H. K., Merriman, T. R., & Mount, D. B. (2023). Genetic and physiological effects of insulin-like growth factor-1 (IGF-1) on human urate homeostasis. Journal of the American Society of Nephrology. Advance online publication. doi: 10.1681/ASN.0000000000000054

Martin, L. W., Gray, A. R., Brockway, B., & Lamont, I. L. (2023). Pseudomonas aeruginosa is oxygen-deprived during infection in cystic fibrosis lungs, reducing the effectiveness of antibiotics. FEMS Microbiology Letters, fnad076. Advance online publication. doi: 10.1093/femsle/fnad076

Maurin, M., Ranjouri, M., Megino-Luque, C., Newberg, J. Y., Du, D., Martin, K., … Black, M. A., & Mann, K. M. (2023). RBFOX2 deregulation promotes pancreatic cancer progression and metastasis through alternative splicing. Nature Communications, 14, 8444. doi: 10.1038/s41467-023-44126-w

McGuinness, C. F., Black, M. A., & Dunbier, A. K. (2023). Restriction site associated DNA sequencing for tumour mutation burden estimation and mutation signature analysis. Cancer Medicine. Advance online publication. doi: 10.1002/cam4.6711

Middleton, A. J., Barzak, F. M., Fokkens, T. J., Nguyen, K., & Day, C. L. (2023). Zinc finger 1 of the RING E3 ligase, RNF125, interacts with the E2 to enhance ubiquitylation. Structure. Advance online publication. doi: 10.1016/j.str.2023.07.007

Moors, J., Krishnan, M., Sumpter, N., Takei, R., Bixley, M., Cadzow, M., Major, T. J., Phipps Green, A., Topless, R., Merriman, M., Rutledge, M., Morgan, B., … Stamp, L., Taumoepeau, M., … Wilcox, P., … McCormick, S., … Merriman, T. R., & Leask, M. (2023). A Polynesian-specific missense CETP variant alters the lipid profile. Human Genetics & Genomic Advances, 4, 100204. doi: 10.1016/j.xhgg.2023.100204

Moravec, J. C., Lanfear, R., Spector, D. L., Diermeier, S. D., & Gavryushkin, A. (2023). Testing for phylogenetic signal in single-cell RNA-seq data. Journal of Computational Biology, 30(4), 518-537. doi: 10.1089/cmb.2022.0357

Morgan-Richards, M., Marshall, C. J., Biggs, P. J., & Trewick, S. A. (2023). Insect freeze-tolerance Downunder: The microbial connection. Insects, 14(1), 89. doi: 10.3390/insects14010089

Mortensen, A. N., Jochym, M., Dearden, P. K., & Sainsbury, J. P. (2023). Old strategies as modern solutions, shook swarming reduced Varroa destructor infestation rates of managed honey bee, Apis mellifera, colonies. Journal of Apicultural Research. Advance online publication. doi: 10.1080/00218839.2023.2243044

Mungure, T. E., Farouk, M. M., Carne, A., Staincliffe, M., Stewart, I., Jowett, T., … Bekhit, A. E.-D. A. (2023). Understanding the influence of PEF treatment on minerals and lipid oxidation of wet- and dry-aged venison M. longissimus dorsi muscle. Innovative Food Science & Emerging Technologies, 83, 103238. doi: 10.1016/j.ifset.2022.103238

Nicholls, C., Chyou, T.-y., & Nishtala, P. S. (2023). Analysis of the adverse nervous system and gastrointestinal events associated with solifenacin in older adults using the US FDA adverse event reporting system. International Journal of Risk & Safety in Medicine, 34(1), 63-73. doi: 10.3233/jrs-210054

Orogun, L., Chyou, T.-y., & Nishtala, P. S. (2023). Acute renal failure and cardiac arrhythmias associated with remdesivir use in patients with COVID-19 infections: Analysis using the US FDA adverse event reporting system. International Journal of Risk & Safety in Medicine, 34, 87-99. doi: 10.3233/jrs-220009

Peppercorn, K., Edgar, C. D., Kleffmann, T., & Tate, W. P. (2023). A pilot study on the immune cell proteome of long COVID patients shows changes to physiological pathways similar to those in myalgic encephalomyelitis/chronic fatigue syndrome. Scientific Reports, 13(1), 22068. doi: 10.1038/s41598-023-49402-9

Peppercorn, K., Kleffmann, T., Hughes, S. M., & Tate, W. P. (2023). Secreted amyloid precursor protein alpha (sAPPα) regulates the cellular proteome and secretome of mouse primary astrocytes. International Journal of Molecular Sciences, 24, 7165. doi: 10.3390/ijms24087165

Ramsay, K. A., Rehman, A., Taylor Wardell, S., Martin, L. W., Bell, S. C., Patrick, W. M., … Lamont, I. L. (2023). Ceftazidime resistance in Pseudomonas aeruginosa is multigenic and complex. PLoS ONE, 18(5), e0285856. doi: 10.1371/journal.pone.0285856

Shafaei Pishabad, Z., Wan, Y. O. A., & Ledgerwood, E. (2023). A cytochrome c variant enhances megakaryocytic maturation. Blood, 142(Suppl. 1), 5591. doi: 10.1182/blood-2023-179186

Sheridan, K. J., Brown, T. J., Eaton-Rye, J. J., & Summerfield, T. C. (2023). Expression of the far-red D1 protein or introduction of conserved far-red D1 residues into Synechocystis sp. PCC 6803 impairs Photosystem II. Physiologia Plantarum, 175, e13997. doi: 10.1111/ppl.13997

Siddiqui, H., Deo, N., Rutledge, M. T., Williams, M. J. A., Redpath, G. M. I., & McCormick, S. P. A. (2023). Plasminogen receptors promote lipoprotein(a) uptake by enhancing surface binding and facilitating macropinocytosis. Arteriosclerosis, Thrombosis, & Vascular Biology. Advance online publication. doi: 10.1161/atvbaha.123.319344

Smith-Diaz, N., Stocker, S. L., Stamp, L. K., Dalbeth, N., Phipps-Green, A. J., Merriman, T. R., & Wright, D. F. B. (2023). An allopurinol adherence tool using plasma oxypurinol concentrations. British Journal of Clinical Pharmacology, 89, 1956-1964. doi: 10.1111/bcp.15516

Soni, A., Nishtala, R., Ng, S., Barnett, R., Chyou, T.-y., Cavill, C., & Sengupta, R. (2023). The natural history of chronic widespread pain in patients with axial spondyloarthritis: A cohort study with clinical and self-tracking data. Rheumatology, 62, 2444-2452. doi: 10.1093/rheumatology/keac679

Sumpter, N. A., Takei, R., Cadzow, M., Topless, R. K. G., Phipps-Green, A. J., Murphy, R., … Major, T. J., Stamp, L. K., … Leask, M. P., … Merriman, T. R. (2023). Association of gout polygenic risk score with age at disease onset and tophaceous disease in European and Polynesian men with gout. Arthritis & Rheumatology, 75(5), 816-825. doi: 10.1002/art.42393

Szakats, S., McAtamney, A., & Wilson, M. J. (2023). Identification of novel microRNAs in the embryonic mouse brain using deep sequencing. Molecular & Cellular Biochemistry. Advance online publication. doi: 10.1007/s11010-023-04730-2

Szakats, S., McAtamney, A., Cross, H., & Wilson, M. J. (2023). Sex-biased gene and microRNA expression in the developing mouse brain is associated with neurodevelopmental functions and neurological phenotypes. Biology of Sex Differences, 14, 57. doi: 10.1186/s13293-023-00538-3

Tate, W. P., Walker, M. O. M., Peppercorn, K., Blair, A. L. H., & Edgar, C. D. (2023). Towards a better understanding of the complexities of myalgic encephalomyelitis/chronic fatigue syndrome and long COVID [Review]. International Journal of Molecular Sciences, 24(6), 5124. doi: 10.3390/ijms24065124

Taylor, M. F., Black, M. A., Hampton, M. B., & Ledgerwood, E. C. (2023). Insights into H₂O₂-induced signaling in Jurkat cells from analysis of gene expression. Free Radical Research. Advance online publication. doi: 10.1080/10715762.2023.2165073

Te Aika, B., Liggins, L., Rye, C., Perkins, E. O., Huh, J., Brauning, R., Godfery, T., & Black, M. A. (2023). Aotearoa genomic data repository: An āhuru mōwai for taonga species sequencing data. Molecular Ecology Resources, 13866. Advance online publication. doi: 10.1111/1755-0998.13866

Thacharodi, A., & Lamont, I. L. (2023). Gene-gene interactions reduce aminoglycoside susceptibility of Pseudomonas aeruginosa through efflux pump-dependent and -independent mechanisms. Antibiotics, 12, 152. doi: 10.3390/antibiotics12010152

Toomata, Z., Leask, M., Krishnan, M., Cadzow, M., Dalbeth, N., Stamp, L. K., … Merriman, T., Wilcox, P., … Murphy, R. (2023). Genetic testing for misclassified monogenic diabetes in Māori and Pacific peoples in Aotearoa New Zealand with early-onset type 2 diabetes. Frontiers in Endocrinology, 14, 1174699. doi: 10.3389/fendo.2023.1174699

Truchado-García, M., Perry, K. J., Cavodeassi, F., Kenny, N. J., Henry, J. Q., & Grande, C. (2023). A small change with a twist ending: A single residue in EGF-CFC drives bilaterian asymmetry. Molecular Biology & Evolution, 40(2), msac270. doi: 10.1093/molbev/msac270

Walker, M. O. M., Peppercorn, K., Kleffmann, T., Edgar, C. D., & Tate, W. P. (2023). An understanding of the immune dysfunction in susceptible people who develop the post-viral fatigue syndromes Myalgic Encephalomyelitis/Chronic Fatigue Syndrome and Long COVID. Medical Research Archives, 11(7). doi: 10.18103/mra.v11i7.1.4083

Wang, M., Li, R., Qi, H., Pang, L., Cui, L., Liu, Z., … Merriman, T. R., … Li, C. (2023). Metabolomics and machine learning identify metabolic differences and potential biomarkers for frequent versus infrequent gout flares. Arthritis & Rheumatology, 42635. Advance online publication. doi: 10.1002/art.42635

Wei, X., Gao, J., Xu, C., Pan, X., Jin, Y., Bai, F., … Lamont, I. L., Pletzer, D., & Wu, W. (2023). Murepavadin induces envelope stress response and enhances the killing efficacies of β-lactam antibiotics by impairing the outer membrane integrity of Pseudomonas aeruginosa. Microbiology Spectrum. Advance online publication. doi: 10.1128/spectrum.01257-23

West, A. G., Digby, A., Kākāpō Recovery Team, Kākāpō Aspergillosis Research Consortium, including Dearden, P. K., Gemmell, N. J., Guhlin, J., Le Lec, M., Quinones Mateu, M., and Taylor, M. D. (2023). The mycobiota of faeces from the critically endangered kākāpō and associated nest litter. New Zealand Journal of Zoology. Advance online publication. doi: 10.1080/03014223.2023.2170428

West, A. G., Digby, A., Santure, A. W., Guhlin, J. G., Dearden, P., Kākāpō Recovery Team, … Urban, L. (2023). Capturing species-wide diversity of the gut microbiota and its relationship with genomic variation in the critically endangered kākāpō. Molecular Ecology. Advance online publication. doi: 10.1111/mec.16999

Wiles, A. K., Mehta, S., Millier, M., Woolley, A. G., Li, K., Parker, K., Kazantseva, M., Wilson, M., Young, K., Bowie, S., Ray, S., Slatter, T. L., Stamp, L. K., Hessian, P. A., & Braithwaite, A. W. (2023). Activated CD90/Thy-1 fibroblasts co-express the Δ133p53β isoform and are associated with highly inflamed rheumatoid arthritis. Arthritis Research & Therapy, 25, 62. doi: 10.1186/s13075-023-03040-8

Yang, Z., Guarracino, A., Biggs, P. J., Black, M. A., Ismail, N., Wold, J. R., Merriman, T. R., … de Ligt, J. (2023). Pangenome graphs in infectious disease: A comprehensive genetic variation analysis of Neisseria meningitidis leveraging Oxford Nanopore long reads. Frontiers in Genetics, 14, 1225248. doi: 10.3389/fgene.2023.1225248

Yi, J., Kradolfer, D., Brownfield, L., Ma, Y., Piskorz, E., Köhler, C., & Jiang, H. (2023). Meiocyte size is a determining factor for unreduced gamete formation in Arabidopsis thaliana. New Phytologist, 237, 1179-1187. doi: 10.1111/nph.18473

Yokose, C., McCormick, N., Lu, N., Tanikella, S., Lin, K., Joshi, A. D., … Merriman, T., … Choi, H. K. (2023). Trends in prevalence of gout among US Asian adults, 2011-2018. JAMA Network Open, 6(4), e239501. doi: 10.1001/jamanetworkopen.2023.9501

Zawierucha, K., Stec, D., Dearden, P. K., & Shain, D. H. (2023). Two new tardigrade genera from New Zealand’s Southern Alp glaciers display morphological stasis and parallel evolution. Molecular Phylogenetics & Evolution, 178, 107634. doi: 10.1016/j.ympev.2022.107634

Zhang, J. Z., Heinsberg, L. W., Krishnan, M., Hawley, N. L., Major, T. J., Carlson, J. C., … Stamp, L. K., … Merriman, T. R., & Weeks, D. E. (2023). Multivariate analysis of a missense variant in CREBRF reveals associations with measures of adiposity in people of Polynesian ancestries. Genetic Epidemiology, 47, 105-118. doi: 10.1002/gepi.22508

Adhikari, B. R., Sinha, S., Lyons, N., Pletzer, D., Lamont, I., Gordon, K. C., & Das, S. C. (2022). Inhalable ceftazidime-roflumilast powder targeting infection and inflammation: Influence of incorporating roflumilast into ceftazidime-leucine co-amorphous formulation. European Journal of Pharmaceutics & Biopharmaceutics, 180, 260-268. doi: 10.1016/j.ejpb.2022.10.005

Ahmmed, M. K., Carne, A., Tian, H. S., & Bekhit, A. E.-D. A. (2022). The effect of pulsed electric fields on the extracted total lipid yield and the lipidomic profile of hoki roe. Food Chemistry, 384, 132476. doi: 10.1016/j.foodchem.2022.132476

Ahmmed, M. K., Carne, A., Tian, H. S., & Bekhit, A. E.-D. A. (2022). Use of fungal and bacterial protease preparations to enhance extraction of lipid from fish roe: Effect on lipidomic profile of extracted oil. Food Chemistry: X, 16, 100499. doi: 10.1016/j.fochx.2022.100499

Al-Zubaidi, A., Cheung, C.-Y., Cook, G. M., Taiaroa, G., Mizrahi, V., Lott, J. S., & Dawes, S. S. (2022). RNase HI depletion strongly potentiates cell killing by rifampicin in mycobacteria. Antimicrobial Agents & Chemotherapy, 66(10). doi: 10.1128/aac.02091-21

Baker, M. G., Gurney, J., Moreland, N. J., Bennett, J., Oliver, J., Williamson, D. A., Pierse, N., … Merriman, T. R., … Edwards, R., … Thomson, W. M., Zhang, J., & Lennon, D. (2022). Risk factors for acute rheumatic fever: A case-control study. Lancet Regional Health: Western Pacific, 26, 100508. doi: 10.1016/j.lanwpc.2022.100508

Biswas, S., & Eaton-Rye, J. J. (2022). PsbX maintains efficient electron transport in Photosystem II and reduces susceptibility to high light in Synechocystis sp. PCC 6803. Biochimica et Biophysica Acta: Bioenergetics, 1863, 148519. doi: 10.1016/j.bbabio.2021.148519

Bougen-Zhukov, N., Decourtye-Espiard, L., Mitchell, W., Redpath, K., Perkinson, J., Godwin, T., Black, M. A., & Guilford, P. (2022). E-cadherin-deficient cells are sensitive to the multikinase inhibitor dasatinib. Cancers, 14, 1609. doi: 10.3390/cancers14071609

Burnett, A., Ahmmed, M. K., Carne, A., Tian, H. S., Ahmed, I. A. M., Al-Juhaimi, F. Y., & Bekhit, A. E.-D. A. (2022). Effect of pulsed electric fields on the lipidomic profile of lipid extracted from hoki fish male gonad. Foods, 11(4), 610. doi: 10.3390/foods11040610

Careno, D. A., Perez Santangelo, S., Macknight, R. C., & Yanovsky, M. J. (2022). The 5ʹ-3ʹ mRNA decay pathway modulates the plant circadian network in Arabidopsis. Plant & Cell Physiology, 63(11), 1709-1719. doi: 10.1093/pcp/pcac126

Caulton, A., Dodds, K. G., McRae, K. M., Couldrey, C., Horvath, S., & Clarke, S. M. (2022). Development of epigenetic clocks for key ruminant species. Genes, 13, 96. doi: 10.3390/genes13010096

Chinzowu, T., Chyou, T.-Y., & Nishtala, P. S. (2022). Antibacterial-associated acute kidney injury among older adults: A post-marketing surveillance study using the FDA Adverse Events Reporting System. Pharmacoepidemiology & Drug Safety, 31, 1190-1198. doi: 10.1002/pds.5486

Choo, P., Forsman, J. A., Hui, L., Khaing, E. P., Summerfield, T. C., & Eaton-Rye, J. J. (2022). The PsbJ protein is required for photosystem II activity in centers lacking the PsbO and PsbV lumenal subunits. Photosynthesis Research, 151, 103-111. doi: 10.1007/s11120-021-00862-y

Dalbeth, N., Mihov, B., Stewart, A., Gamble, G. D., Merriman, T. R., Mount, D., … Stamp, L. K., & Horne, A. (2022). Effects of elevated serum urate on cardiometabolic and kidney function markers in a randomised clinical trial of inosine supplementation. Scientific Reports, 12(1), 12887. doi: 10.1038/s41598-022-17257-1

Dearborn, J. T., Nelvagal, H. R., Rensing, N. R., Takahashi, K., Hughes, S. M., Wishart, T. M., … Sands, M. S. (2022). Effects of chronic cannabidiol in a mouse model of naturally occurring neuroinflammation, neurodegeneration, and spontaneous seizures. Scientific Reports, 12, 11286. doi: 10.1038/s41598-022-15134-5

Decourtye, L., McCallum-Loudeac, J. A., Zellhuber-McMillan, S., Young, E., Sircombe, K. J., & Wilson, M. J. (2022). Characterization of a novel Lbx1 mouse loss of function strain. Differentiation, 123, 30-41. doi: 10.1016/j.diff.2021.12.001

Douglas, J., Winter, D., McNeill, A., Carr, S., Bunce, M., French, N., … de Ligt, J., Welch, D., & Geoghegan, J. L. (2022). Tracing the international arrivals of SARS-CoV-2 Omicron variants after Aotearoa New Zealand reopened its border. Nature Communications, 13, 6484. doi: 10.1038/s41467-022-34186-9

Forde, T. L., Dennis, T. P. W., Aminu, O. R., Harvey, W. T., Hassim, A., Kiwelu, I., … Biek, R. (2022). Population genomics of Bacillus anthracis from an anthrax hyperendemic area reveals transmission processes across spatial scales and unexpected within-host diversity. Microbial Genomics, 8, 000759. doi: 10.1099/mgen.0.000759

Gao, Q., Cheng, X., Merriman, T. R., Wang, C., Cui, L., Zhang, H., … Lu, J. (2022). Manifestations de la goutte chez 9754 patients d’un centre clinique chinois: étude observationnelle sur 10 ans. Revue du Rhumatisme, 89, 65-71. doi: 10.1016/j.rhum.2021.07.002

Gardner, P. P., Paterson, J. M., McGimpsey, S., Ashari-Ghomi, F., Umu, S. U., Pawlik, A., Gavryushkin, A., & Black, M. A. (2022). Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software. Genome Biology, 23, 56. doi: 10.1186/s13059-022-02625-x

Guévremont, D., Tsui, H., Knight, R. G., Fowler, C. J., Masters, C. L., Martins, R. N., Abraham, W. C., Tate, W. P., Cutfield, N. J., & Williams, J. M. (2022). Plasma microRNA vary in association with the progression of Alzheimer's disease. Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring, 14, e12251. doi: 10.1002/dad2.12251

Ha, M., Bekhit, A. E.-D., McConnell, M., & Carne, A. (2022). A simple method for enrichment of β-lactoglobulin from bovine milk whey involving selective hydrolysis by two fungal protease preparations. Food Chemistry, 368, 130820. doi: 10.1016/j.foodchem.2021.130820

Hakkaart, C., Pearson, J. F., Marquart, L., Dennis, J., Wiggins, G. A. R., Barnes, D. R., Robinson, B. A., Mace, P. D., … Walker, L. C. (2022). Copy number variants as modifiers of breast cancer risk for BRCA1/BRCA2 pathogenic variant carriers. Communications Biology, 5, 1061. doi: 10.1038/s42003-022-03978-6

Handley, T. N. G., Kleffmann, T., & Butler, M. I. (2022). Development of ULYSSIS, a tool for the biosynthesis of cyclotides and cyclic knottins. International Journal of Peptide Research & Therapeutics, 28, 21. doi: 10.1007/s10989-021-10336-3

Hards, K., Cheung, C.-Y., Waller, N., Adolph, C., Keighley, L., Tee, Z. S., Harold, L. K., Menorca, A., … Tyndall, J. D. A., McNeil, M. B., … Opel-Reading, H. K., Krause, K. L., … Berney, M., … Cook, G. M. (2022). An amiloride derivative is active against the F₁F_o-ATP synthase and cytochrome bd oxidase of Mycobacterium tuberculosis. Communications Biology, 5, 166. doi: 10.1038/s42003-022-03110-8

Harfoot, R., Lawley, B., Hernández, L. C., Kuang, J., Grant, J., Treece, J. M., LeQueux, S., Day, R., Jack, S., Stanton, J.-A. L., Bostina, M., Ussher, J. E., & Quiñones‑Mateu, M. E. (2022). Characterization of the first SARS-CoV-2 isolates from Aotearoa New Zealand as part of a rapid response to the COVID-19 pandemic. Viruses, 14, 366. doi: 10.3390/v14020366

He, Y., Xue, X., Terkeltaub, R., Dalbeth, N., Merriman, T. R., Mount, D. B., … Li, C. (2022). Association of acidic urine pH with impaired renal function in primary gout patients: A Chinese population-based cross-sectional study. Arthritis Research & Therapy, 24(1), 32. doi: 10.1186/s13075-022-02725-w

Helliwell, A. M., Stockwell, P. A., Edgar, C. D., Chatterjee, A., & Tate, W. P. (2022). Dynamic epigenetic changes during a relapse and recovery cycle in myalgic encephalomyelitis/chronic fatigue ayndrome. International Journal of Molecular Sciences, 23(19), 11852. doi: 10.3390/ijms231911852

Herridge, R., McCourt, T., Jacobs, J. M. E., Mace, P., Brownfield, L., & Macknight, R. (2022). Identification of the genes at S and Z reveals the molecular basis and evolution of grass self-incompatibility. Frontiers in Plant Science, 13, 1011299. doi: 10.3389/fpls.2022.1011299

Hitchman, L. M., Faatoese, A., Merriman, T. R., Miller, A. L., Liau, Y., Graham, O. E. E., Kee, P. S., Pearson, J. F., … Cameron, V. A., Kennedy, M. A., & Maggo, S. D. S. (2022). Allelic diversity of the pharmacogene CYP2D6 in New Zealand Māori and Pacific peoples. Frontiers in Genetics, 13, 1016416. doi: 10.3389/fgene.2022.1016416

Hudson, D. T., Bromell, J. S., Day, R. C., McInnes, T., Ward, J. M., & Beck, C. W. (2022). Gene expression analysis of the Xenopus laevis early limb bud proximodistal axis. Developmental Dynamics, 251, 1880-1896. doi: 10.1002/dvdy.517

Jamieson, S. A., Pudjihartono, M., Horne, C. R., Salamanca Viloria, J., Dunlop, J. L., McMillan, H. D., Day, R. C., … Mace, P. D. (2022). Nanobodies identify an activated state of the TRIB2 pseudokinase. Structure, 30, 1518-1529. doi: 10.1016/j.str.2022.08.006

Jelley, L., Douglas, J., Ren, X., Winter, D., McNeill, A., Huang, S., French, N., Welch, D., … de Ligt, J., & Geoghegan, J. L. (2022). Genomic epidemiology of Delta SARS-CoV-2 during transition from elimination to suppression in Aotearoa New Zealand. Nature Communications, 13, 4035. doi: 10.1038/s41467-022-31784-5

Jeunen, G.-J., von Ammon, U., Cross, H., Ferreira, S., Lamare, M., Day, R., Treece, J., … Gemmell, N. J., & Stanton, J.-A. L. (2022). Moving environmental DNA (eDNA) technologies from benchtop to the field using passive sampling and PDQeX extraction. Environmental DNA, 4, 1420-1433. doi: 10.1002/edn3.356

Karunaraj, P., Tidswell, O., Duncan, E. J., Lovegrove, M. R., Jefferies, G., Johnson, T. K., Beck, C. W., & Dearden, P. K. (2022). Noggin proteins are multifunctional extracellular regulators of cell signaling. Genetics, 221(1), iyac049. doi: 10.1093/genetics/iyac049

Kavle, R. R., Carne, A., Bekhit, A. E.-D. A., Kebede, B., & Agyei, D. (2022). Macronutrients and mineral composition of wild harvested Prionoplus reticularis edible insect at various development stages: Nutritional and mineral safety implications. International Journal of Food Science & Technology, 57, 6270-6278. doi: 10.1111/ijfs.15545

Kavle, R. R., Carne, A., Bekhit, A. E.-D. A., Kebede, B., & Agyei, D. (2022). Proximate composition and lipid nutritional indices of larvae and pupae of the edible Huhu beetle (Prionoplus reticularis) endemic to New Zealand. Journal of Food Composition & Analysis, 110, 104578. doi: 10.1016/j.jfca.2022.104578

Kavle, R. R., Pritchard, E. T. M., Bekhit, A. E.-D. A., Carne, A., & Agyei, D. (2022). Edible insects: A bibliometric analysis and current trends of published studies (1953-2021). International Journal of Tropical Insect Science, 42, 3335-3355. doi: 10.1007/s42690-022-00814-6

Khaing, E. P., Zhong, V., Kodru, S., Vass, I., & Eaton-Rye, J. J. (2022). Tyr244 of the D2 protein is required for correct assembly and operation of the quinone-iron-bicarbonate acceptor complex of Photosystem II. Biochemistry, 61, 1298-1312. doi: 10.1021/acs.biochem.2c00164

Kip, E., Bentall, L., Underwood, C. F., Hughes, S. M., & Parr-Brownlie, L. C. (2022). Patterned stimulation of the Chrimson opsin in glutamatergic motor thalamus neurons improves forelimb akinesia in parkinsonian rats. Neuroscience, 507, 64-78. doi: 10.1016/j.neuroscience.2022.10.026

Lam, P., Vinnakota, C., Calvo-Flores Guzmán, B., Newland, J., Peppercorn, K., Tate, W. P., … Kwakowsky, A. (2022). Beta-amyloid (Aβ_1-42) increases the expression of NKCC1 in the mouse hippocampus. Molecules, 27, 2440. doi: 10.3390/molecules27082440

Lawer, A., Tyler, C., Hards, K., Keighley, L. M., Cheung, C.-Y., Kierek, F., Su, S., … McInnes, T., Tyndall, J. D. A., Krause, K. L., Cook, G. M., & Gamble, A. B. (2022). Synthesis and biological evaluation of aurachin D analogues as inhibitors of Mycobacterium tuberculosis cytochrome bd oxidase. ACS Medicinal Chemistry Letters, 13, 1663-1669. doi: 10.1021/acsmedchemlett.2c00401

Lee, K., Vakili, S., Burden, H. J., Adams, S., Smith, G. C., Kulatea, B., Wright-McNaughton, M., Sword, D., … King, F., Wilcox, P., Merriman, T. R., Krebs, J. D., Hall, R. M., Murphy, R., Merry, T. L., & Shepherd, P. R. (2022). The minor allele of the CREBRF rs373863828 p.R457Q coding variant is associated with reduced levels of myostatin in males: Implications for body composition. Molecular Metabolism, 59, 101464. doi: 10.1016/j.molmet.2022.101464

Leiva, C., Riesgo, A., Combosch, D., Arias, M. B., Giribet, G., Downey, R., Kenny, N. J., & Taboada, S. (2022). Guiding marine protected area network design with comparative phylogeography and population genomics: An exemplary case from the Southern Ocean. Diversity & Distributions, 28, 1891-1907. doi: 10.1111/ddi.13590

Lubbe, P., Rawlence, N. J., Kardailsky, O., Robertson, B. C., Day, R., Knapp, M., & Dussex, N. (2022). Mitogenomes resolve the phylogeography and divergence times within the endemic New Zealand Callaeidae (Aves: Passerida). Zoological Journal of the Linnean Society, 196, 1451-1463. doi: 10.1093/zoolinnean/zlac060

Lupi, A. S., Sumpter, N. A., Leask, M. P., O'Sullivan, J., Fadason, T., de los Campos, G., Merriman, T. R., … Vazquez, A. I. (2022). Local genetic covariance between serum urate and kidney function estimated with Bayesian multitrait models. Genes Genomes Genetics, 12(9), jkac158. doi: 10.1093/g3journal/jkac158

Martín-de-Saavedra, M. D., Dos Santos, M., Culotta, L., Varea, O., Spielman, B. P., Parnell, E., … Turk, L. S., … Penzes, P. (2022). Shed CNTNAP2 ectodomain is detectable in CSF and regulates Ca²⁺ homeostasis and network synchrony via PMCA2/ATP2B2. Neuron, 110, 627-643. doi: 10.1016/j.neuron.2021.11.025

McCormick, N., Yokose, C., Joshi, A. D., Sheehy, S., Rosenberg, L., Warner, E. T., … Merriman, T. R., … Choi, H. K. (2022). Racial and sex disparities in gout prevalence among US adults. JAMA Network Open, 5(8), e2226804. doi: 10.1001/jamanetworkopen.2022.26804

Mehta, S., Wright, D., Black, M. A., Merrie, A., Anjomshoaa, A., Munro, F., Reeve, A., McCall, J., & Print, C. (2022). Impact of clinical data veracity on cancer genomic research. JNCI Cancer Spectrum. doi: 10.1093/jncics/pkac070

Nishtala, P. S., & Chyou, T.-y. (2022). An updated analysis of psychotropic medicine utilisation in older people in New Zealand from 2005 to 2019. Drugs & Aging, 39, 657-669. doi: 10.1007/s40266-022-00965-8

Ohline, S. M., Chan, C., Schoderboeck, L., Wicky, H. E., Tate, W. P., Hughes, S. M., & Abraham, W. C. (2022). Effect of soluble amyloid precursor protein-alpha on adult hippocampal neurogenesis in a mouse model of Alzheimer's disease. Molecular Brain, 15, 5. doi: 10.1186/s13041-021-00889-1

Palmer, H., Nimick, M., Mazumder, A., Taurin, S., Rana, Z., & Rosengren, R. J. (2022). Raloxifene suppresses tumor growth and metastasis in an orthotopic model of castration-resistant prostate cancer. Biomedicines, 10, 853. doi: 10.3390/biomedicines10040853

Palmer, S., Dearden, P. K., Mercier, O. R., King-Hunt, A., & Lester, P. J. (2022). Gene drive and RNAi technologies: A bio-cultural review of next-generation tools for pest wasp management in New Zealand. Journal of the Royal Society of New Zealand, 52(5), 508-525. doi: 10.1080/03036758.2021.1985531

Paluda, A., Middleton, A. J., Rossig, C., Mace, P. D., & Day, C. L. (2022). Ubiquitin and a charged loop regulate the ubiquitin E3 ligase activity of Ark2C. Nature Communications, 13, 1181. doi: 10.1038/s41467-022-28782-y

Peppercorn, K., Kleffmann, T., Jones, O., Hughes, S., & Tate, W. (2022). Secreted amyloid precursor protein alpha, a neuroprotective protein in the brain has widespread effects on the transcriptome and proteome of human inducible pluripotent stem cell-derived glutamatergic neurons related to memory mechanisms. Frontiers in Neuroscience, 16, 858524. doi: 10.3389/fnins.2022.858524

Perez-Santangelo, S., Napier, N., Robson, F., Weller, J. L., Bond, D. M., & Macknight, R. C. (2022). A point mutation in Phytochromobilin synthase alters the circadian clock and photoperiodic flowering of Medicago truncatula. Plants, 11(3), 239. doi: 10.3390/plants11030239

Phiri, B. J., Fèvre, D., & Hidano, A. (2022). Uptrend in global managed honey bee colonies and production based on a six-decade viewpoint, 1961-2017. Scientific Reports, 12(1), 21298. doi: 10.1038/s41598-022-25290-3

Rana, Z., Rosengren, R., & Smith, P. (2022). Exploring the mechanism and suggesting combination therapies for HDAC inhibitors in androgen receptor-null prostate cancer using multivariate statistical analysis and data mining techniques. Bioinformatics & Biology Insights. Advance online publication. doi: 10.1177/11779322221145428

Russell, E. M., Carlson, J. C., Krishnan, M., Hawley, N. L., Sun, G., Cheng, H., … Major, T. J., … Merriman, T. R., … Minster, R. L. (2022). CREBRF missense variant rs373863828 has both direct and indirect effects on type 2 diabetes and fasting glucose in Polynesian peoples living in Samoa and Aotearoa New Zealand. BMJ Open Diabetes Research & Care, 10, e002275. doi: 10.1136/bmjdrc-2021-002275

Samarth, Lee, R., Kelly, D., Turnbull, M. H., Macknight, R., Poole, A. M., & Jameson, P. E. (2022). A novel TFL1 gene induces flowering in the mast seeding alpine snow tussock, Chionochloa pallens (Poaceae). Molecular Ecology, 31, 822-838. doi: 10.1111/mec.16273

Sattar, S., Ullah, I., Khanum, S., Bailie, M., Shamsi, B., Ahmed, I., … Altermann, E. (2022). Genome analysis and therapeutic evaluation of a novel lytic bacteriophage of Salmonella Typhimurium: Suggestive of a new genus in the subfamily Vequintavirinae. Viruses, 14, 241. doi: 10.3390/v14020241

Sattar, S., Ullah, I., Khanum, S., Bailie, M., Shamsi, B., Ahmed, I., … Altermann, E. (2022). Phenotypic characterization and genome analysis of a novel Salmonella Typhimurium phage having unique tail fiber genes. Scientific Reports, 12, 5732. doi: 10.1038/s41598-022-09733-5

Shain, D. H., Iakovenko, N. S., Cridge, A. G., Novis, P. M., Plášek, V., & Dearden, P. K. (2022). Microinvertebrate colonization of New Zealand’s thermally extreme environments. Evolutionary Biology, 49, 414-423. doi: 10.1007/s11692-022-09578-w

Shakil, M. S., Rana, Z., Hanif, M., & Rosengren, R. J. (2022). Key considerations when using the sulforhodamine B assay for screening novel anticancer agents. Anti-Cancer Drugs, 33(1), 6-10. doi: 10.1097/CAD.0000000000001131

Shehreen, S., Birkholz, N., Fineran, P. C., & Brown, C. M. (2022). Widespread repression of anti-CRISPR production by anti-CRISPR-associated proteins. Nucleic Acids Research, 50(15), 8615-8625. doi: 10.1093/nar/gkac674

Smyth, L. C. D., Murray, H. C., Hill, M., van Leeuwen, E., Highet, B., Magon, N. J., … Mathiesen, S. N., Mockett, B., … Clarkson, A. N., … Abraham, W. C., Hughes, S. M., … Kettle, A. J., … Hampton, M. B. (2022). Neutrophil-vascular interactions drive myeloperoxidase accumulation in the brain in Alzheimer's disease. Acta Neuropathologicca Communications, 10, 38. doi: 10.1186/s40478-022-01347-2

Stewart, S., Phipps-Green, A., Gamble, G. D., Stamp, L. K., Taylor, W. J., Neogi, T., Merriman, T. R., & Dalbeth, N. (2022). Is repeat serum urate testing superior to a single test to predict incident gout over time? PLoS ONE, 17(2), e0263175. doi: 10.1371/journal.pone.0263175

Stoller, M. L., Basak, I., Denorme, F., Rowley, J. W., Alsobrooks, J., Parsawar, K., … Campbell, R. A. (2022). Neutrophil cathepsin G proteolysis of protease activated receptor 4 generates a novel, functional tethered ligand. Blood Advances, 6(7), 2303-2308. doi: 10.1182/bloodadvances.2021006133

Sun, M., Sun, W., Zhao, X., Li, Z., Dalbeth, N., Ji, A., … Merriman, T. R., & Li, C. (2022). A machine learning-assisted model for renal urate underexcretion with genetic and clinical variables among Chinese men with gout. Arthritis Research & Therapy, 24, 67. doi: 10.1186/s13075-022-02755-4

Tate, W., Walker, M., Sweetman, E., Helliwell, A., Peppercorn, K., Edgar, C., Blair, A., & Chatterjee, A. (2022). Molecular mechanisms of neuroinflammation in ME/CFS and long COVID to sustain disease and promote relapses. Frontiers in Neurology, 13, 877772. doi: 10.3389/fneur.2022.877772

Taylor, S. E., & Dearden, P. K. (2022). The Nasonia pair-rule gene regulatory network retains its function over 300 million years of evolution. Development, 149, dev199632. doi: 10.1242/dev.199632

Tessadori, F., Duran, K., Knapp, K., Fellner, M., Deciphering Developmental Disorders Study, Smithson, S., … Robertson, S. P., … Mace, P. D., Bicknell, L. S., & van Haaften, G. (2022). Recurrent de novo missense variants across multiple histone H4 genes underlie a neurodevelopmental syndrome. American Journal of Human Genetics, 109, 750-758. doi: 10.1016/j.ajhg.2022.02.003

Thacharodi, A., & Lamont, I. L. (2022). Aminoglycoside resistance in Pseudomonas aeruginosa: The contribution of the MexXY-OprM efflux pump varies between isolates. Journal of Medical Microbiology, 71(6), 001551. doi: 10.1099/jmm.0.001551

Thacharodi, A., & Lamont, I. L. (2022). Aminoglycoside-modifying enzymes are sufficient to make Pseudomonas aeruginosa clinically resistant to key antibiotics. Antibiotics, 11(7), 884. doi: 10.3390/antibiotics11070884

Topless, R. K., Gaffo, A., Stamp, L. K., Robinson, P. C., Dalbeth, N., & Merriman, T. R. (2022). Gout and the risk of COVID-19 diagnosis and death in the UK Biobank: A population-based study. Lancet Rheumatology, 4, e274-e281. doi: 10.1016/S2665-9913(21)00401-X

Topless, R., Green, R., Morgan, S. L., Robinson, P., Merriman, T., & Gaffo, A. L. (2022). Folic acid and methotrexate use and their association with COVID-19 diagnosis and mortality: A case-control analysis from the UK Biobank. BMJ Open, 12, e062945. doi: 10.1136/bmjopen-2022-062945

Topless, R., Noorbaloochi, S., Merriman, T. R., & Singh, J. A. (2022). Change in serum urate level with urate-lowering therapy initiation associates in the immediate term with patient-reported outcomes in people with gout. Seminars in Arthritis & Rheumatism, 56, 152057. doi: 10.1016/j.semarthrit.2022.152057

Walker, M. O. M., Hall, K. H., Peppercorn, K., & Tate, W. P. (2022). The significance of oxidative stress in the pathophysiology of Long COVID and Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS). Medical Research Archives, 10(9), 3050. doi: 10.18103/mra.v10i9.3050

Wang, K., Cadzow, M., Bixley, M., Leask, M. P., Merriman, M. E., Yang, Q., … Takei, R., Phipps-Green, A., Major, T. J., Topless, R., … Stamp, L. K., … Merriman, T. R. (2022). A Polynesian-specific copy number variant encompassing the MICA gene associates with gout. Human Molecular Genetics, 31(21), 3757-3768. doi: 10.1093/hmg/ddac094

Winichayakul, S., Macknight, R., Le Lievre, L., Beechey-Gradwell, Z., Lee, R., Cooney, L., … Roberts, N. (2022). Insight into the regulatory networks underlying the high lipid perennial ryegrass growth under different irradiances. PLoS ONE, 17(10), e0275503. doi: 10.1371/journal.pone.0275503

Winter, D. J., Weir, B. S., Glare, T., Rhodes, J., Perrott, J., Fisher, M. C., … Dearden, P. K., & Cox, M. P. (2022). A single fungal strain was the unexpected cause of a mass aspergillosis outbreak in the world’s largest and only flightless parrot. iScience, 25, 105470. doi: 10.1016/j.isci.2022.105470

Xue, X., Yuan, X., Han, L., Li, X., Merriman, T. R., Cui, L., … Li, C. (2022). Effect of clinical typing on serum urate targets of benzbromarone in Chinese gout patients: A prospective cohort study. Frontiers in Medicine, 8, 806710. doi: 10.3389/fmed.2021.806710

Ahmmed, M. K., Ahmmed, F., Stewart, I., Carne, A., Tian, H. S., & Bekhit, A. E.-D. A. (2021). Omega-3 phospholipids in Pacific blue mackerel (Scomber australasicus) processing by-products. Food Chemistry, 353, 129451. doi: 10.1016/j.foodchem.2021.129451

Ahmmed, M. K., Carne, A., Ahmmed, F., Stewart, I., Tian, H., & Bekhit, A. E.-D. A. (2021). Positional distribution of fatty acids and phospholipid composition in King salmon (Oncorhynchus tshawytscha) head, roe and skin using nuclear magnetic resonance spectroscopy. Food Chemistry, 363, 130302. doi: 10.1016/j.foodchem.2021.130302

Ahmmed, M. K., Carne, A., Bunga, S., Tian, H. S., & Bekhit, A. E.-D. A. (2021). Lipidomic signature of Pacific lean fish species head and skin using gas chromatography and nuclear magnetic resonance spectroscopy. Food Chemistry, 365, 130637. doi: 10.1016/j.foodchem.2021.130637

Ahmmed, M. K., Carne, A., Stewart, I., Tian, H., & Bekhit, A. E.-D. A. (2021). Phosphorus-31 nuclear magnetic resonance (³¹P NMR) for quantitative measurements of phospholipids derived from natural products: Effect of analysis conditions. LWT, 142, 110991. doi: 10.1016/j.lwt.2021.110991

Aiderus, A., Newberg, J. Y., Guzman-Rojas, L., Contreras-Sandoval, A. M., Meshey, A. L., Jones, D. J., … Black, M. A., … Mann, M. B. (2021). Transposon mutagenesis identifies cooperating genetic drivers during keratinocyte transformation and cutaneous squamous cell carcinoma progression. PLoS Genetics, 17(8), e1009094. doi: 10.1371/journal.pgen.1009094

Al-Ani, A. H., Antoun, J. S., Thomson, W. M., Topless, R., Merriman, T. R., & Farella, M. (2021). Common variants of EDA are associated with non-syndromic hypodontia. Orthodontics & Craniofacial Research, 24, 155-163. doi: 10.1111/ocr.12419

Almomani, S. N., Alsaleh, A. A., Weeks, R. J., Chatterjee, A., Day, R. C., Honda, I., … Fukuzawa, R., Slatter, T. L., Hung, N. A., Devenish, C., Morison, I. M., & Macaulay, E. C. (2021). Identification and validation of DNA methylation changes in pre-eclampsia. Placenta, 110, 16-23. doi: 10.1016/j.placenta.2021.05.005

Badart, M. P., Barnes, E. M., Cording, A. P., Gilmer, S. C. L., Billinghurst, I. D., Edupuganti, V. V. S. R., … Bland, A. R., Bower, R. L., Rana, Z., Ferguson, S. A., Opel Reading, H. K., Cook, G. M., Rosengren, R. J., Krause, K. L., Gamble, A. B., Ashton, J. C., & Hawkins, B. C. (2021). Synthesis and biological evaluation of (-) and (+)-spiroleucettadine and analogues. ChemMedChem, 16, 1308-1315. doi: 10.1002/cmdc.202000954

Badii, M., Gaal, O. I., Cleophas, M. C., Klück, V., Davar, R., Habibi, E., … Stamp, L. K., … Phipps-Green, A. J., … Merriman, T. R., … Joosten, L. A. B. (2021). Urate-induced epigenetic modifications in myeloid cells. Arthritis Research & Therapy, 23, 202. doi: 10.1186/s13075-021-02580-1

Barnett, S. C., Parr-Brownlie, L. C., Perry, B. A. L., Young, C. K., Wicky, H. E., Hughes, S. M., McNaughton, N., & Dalrymple-Alford, J. C. (2021). Anterior thalamic nuclei neurons sustain memory. Current Research in Neurobiology, 2, 100022. doi: 10.1016/j.crneur.2021.100022

Barzak, F. M., Ryan, T. M., Kvach, M. V., Kurup, H. M., Aihara, H., Harris, R. S., … Jameson, G. B. (2021). Small-angle x-ray scattering models of APOBEC3B catalytic domain in a complex with a single-stranded DNA inhibitor. Viruses, 13(2), 290. doi: 10.3390/v13020290

Basak, I., Hansen, R. A., Ward, M. E., & Hughes, S. M. (2021). Deficiency of the lysosomal protein CLN5 alters lysosomal function and movement. Biomolecules, 11, 1412. doi: 10.3390/biom11101412

Begemann, A., Sticht, H., Begtrup, A., Vitobello, A., Faivre, L., Siddharth, B., … Day, R., … Sadleir, L. G., … Rauch, A. (2021). New insights into the clinical and molecular spectrum of the novel CYFIP2-related neurodevelopmental disorder and impairment of the WRC-mediated actin dynamics. Genetics in Medicine, 23(3), 543-554. doi: 10.1038/s41436-020-01011-x

Bhandari, B. K., Lim, C. S., & Gardner, P. P. (2021). TISIGNER.com: Web services for improving recombinant protein production. Nucleic Acids Research, 49, W654-W661. doi: 10.1093/nar/gkab175

Bhandari, B. K., Lim, C. S., Remus, D. M., Chen, A., van Dolleweerd, C., & Gardner, P. P. (2021). Analysis of 11,430 recombinant protein production experiments reveals that protein yield is tunable by synonymous codon changes of translation initiation sites. PLoS Computational Biology, 17(10), e1009461. doi: 10.1371/journal.pcbi.1009461

Blakes, A. J. M., Gaul, E., Lam, W., Shannon, N., Knapp, K. M., Bicknell, L. S., Jackson, M. R., Wade, E. M., Robertson, S., … Douglas, A. G. L. (2021). Pathogenic variants causing ABL1 malformation syndrome cluster in a myristoyl-binding pocket and increase tyrosine kinase activity. European Journal of Human Genetics, 29, 593-603. doi: 10.1038/s41431-020-00766-w

Brew, T., Bougen-Zhukov, N., Mitchell, W., Decourtye, L., Schulpen, E., Nouri, Y., Godwin, T., & Guilford, P. (2021). Loss of E-cadherin leads to druggable vulnerabilities in sphingolipid metabolism and vesicle trafficking. Cancers, 14(1), 102. doi: 10.3390/ cancers14010102

Bunga, S., Ahmmed, M. K., Carne, A., & Bekhit, A. E.-D. A. (2021). Effect of salted-drying on bioactive compounds and microbiological changes during the processing of karasumi-like Chinook salmon (Oncorhynchus tshawytscha) roe product. Food Chemistry, 357, 129780. doi: 10.1016/j.foodchem.2021.129780

Burden, H. J., Adams, S., Kulatea, B., Wright-McNaughton, M., Sword, D., Ormsbee, J. J., … Merriman, T. R., … Krebs, J. D., Hall, R. M., … Merry, T. L. (2021). The CREBRF diabetes-protective rs373863828-A allele is associated with enhanced early insulin release in men of Māori and Pacific ancestry. Diabetologia, 64, 2779-2789. doi: 10.1007/s00125-021-05552-x

Burgess, A. E., Kleffmann, T., & Mace, P. D. (2021). Oncogenic truncations of ASXL1 enhance a motif for BRD4 ET-domain binding. Journal of Molecular Biology, 433, 167242. doi: 10.1016/j.jmb.2021.167242

Calcino, A. D., Kenny, N. J., & Gerdol, M. (2021). Single individual structural variant detection uncovers widespread hemizygosity in molluscs. Philosophical Transactions of the Royal Society B, 376, 20200153. doi: 10.1098/rstb.2020.0153

Campbell, A. C., Tanner, J. J., & Krause, K. L. (2021). Optimisation of neuraminidase expression for use in drug discovery by using HEK293-6E cells. Viruses, 13, 1893. doi: 10.3390/v13101893

Chen, S., Lovell, S., Lee, S., Fellner, M., Mace, P. D., & Bogyo, M. (2021). Identification of highly selective covalent inhibitors by phage display. Nature Biotechnology, 39, 490-498. doi: 10.1038/s41587-020-0733-7

Chyou, T.-y., & Nishtala, P. S. (2021). Identifying frequent drug combinations associated with delirium in older adults: application of association rules method to a case-time-control design. Pharmacoepidemiology & Drug Safety, 30, 1402-1410. doi: 10.1002/pds.5292

Colantonio, L. D., Reynolds, R. J., Merriman, T. R., Gaffo, A., Singh, J. A., Plante, T. B., … Irvin, M. R. (2021). Higher serum urate levels are associated with an increased risk for sudden cardiac death. Journal of Rheumatology, 48, 1745-1753. doi: 10.3899/jrheum.210139

Dalbeth, N., Horne, A., Mihov, B., Stewart, A., Gamble, G. D., Merriman, T. R., Stamp, L. K., & Reid, I. R. (2021). Elevated urate does not alter bone turnover markers: Randomized controlled trial of inosine supplementation in post-menopausal women. Arthritis & Rheumatology, 73(9), 1758-1764. doi: 10.1002/art.41691

Daniloski, D., Petkoska, A. T., Lee, N. A., Bekhit, A. E.-D., Carne, A., & Vaskoska, R. (2021). Active edible packaging based on milk proteins: A route to carry and deliver nutraceuticals. Trends in Food Science & Technology, 111, 688-705. doi: 10.1016/j.tifs.2021.03.024

Das, A., Middleton, A. J., Padala, P., Ledgerwood, E. C., Mace, P. D., & Day, C. L. (2021). The structure and ubiquitin binding properties of TRAF RING heterodimers. Journal of Molecular Biology, 433, 166844. doi: 10.1016/j.jmb.2021.166844

Decourtye-Espiard, L., Bougen-Zhukov, N., Godwin, T., Brew, T., Schulpen, E., Black, M. A., & Guilford, P. (2021). E-cadherin-deficient epithelial cells are sensitive to HDAC inhibitors. Cancers, 14(1), 175. doi: 10.3390/ cancers14010102

Dixon, K., Brew, T., Farnell, D., Godwin, T. D., Cheung, S., Chow, C., … Guilford, P., & Huntsman, D. G. (2021). Modelling hereditary diffuse gastric cancer initiation using transgenic mouse-derived gastric organoids and single-cell sequencing. Journal of Pathology, 254, 254-264. doi: 10.1002/path.5675

Dussex, N., van der Valk, T., Morales, H. E., Wheat, C. W., Díez-del-Molino, D., von Seth, J., Foster, Y., … Le Lec, M. F., Dearden, P. K., … Knapp, M., Gemmell, N. J., Robertson, F., … Robertson, B. C., & Dalén, L. (2021). Population genomics of the critically endangered kākāpō. Cell Genomics, 1, 100002. doi: 10.1016/j.xgen.2021.100002

Emde, A.-K., Phipps-Green, A., Cadzow, M., Gallagher, C. S., Major, T. J., Merriman, M. E., Topless, R. K., Takei, R., Dalbeth, N., … Stamp, L. K., … Wilcox, P. L., … Merriman, T. R., & Castel, S. E. (2021). Mid-pass whole genome sequencing enables biomedical genetic studies of diverse populations. BMC Genomics, 22, 666. doi: 10.1186/s12864-021-07949-9

Fellner, M., Parakra, R., McDonald, K. O., Kass, I., Jameson, G. N. L., Willbanks, S. M., & Ledgerwood, E. C. (2021). Altered structure and dynamics of pathogenic cytochrome c variants correlate with increased apoptotic activity. Biochemical Journal, 478(3), 669-684. doi: 10.1042/bcj20200793

Forsman, J. A., & Eaton-Rye, J. J. (2021). The hydrophobicity of mutations targeting D1:Val219 modifies formate and diuron binding in the quinone-Fe-acceptor complex of Photosystem II. Physiologia Plantarum, 172, 2217-2225. doi: 10.1111/ppl.13469

Forsman, J. A., & Eaton-Rye, J. J. (2021). The interaction between PsbT and the DE loop of D1 in Photosystem II stabilizes the quinone-iron electron acceptor complex. Biochemistry, 60(1), 53-63. doi: 10.1021/acs.biochem.0c00668

Gao, Q., Cheng, X., Merriman, T. R., Wang, C., Cui, L., Zhang, H., … Lu, J. (2021). Trends in the manifestations of 9754 gout patients in a Chinese clinical center: A 10-year observational study. Joint Bone Spine, 88, 105078. doi: 10.1016/j.jbspin.2020.09.010

Glen, K. A., & Lamont, I. L. (2021). β-lactam resistance in Pseudomonas aeruginosa: Current status, future prospects. Pathogens, 10(12), 1638. doi: 10.3390/pathogens10121638

Hazlett, J., Niemi, V., Aiderus, A., Powell, K., Wise, L., Kemp, R., & Dunbier, A. K. (2021). Oestrogen deprivation induces chemokine production and immune cell recruitment in in vitro and in vivo models of oestrogen receptor-positive breast cancer. Breast Cancer Research, 23, 95. doi: 10.1186/s13058-021-01472-1

Herridge, R., Samarth, Brownfield, L., & Macknight, R. (2021). Identification and characterization of perennial ryegrass (Lolium perenne) vernalization genes. Frontiers in Plant Science, 12, 640324. doi: 10.3389/fpls.2021.640324

Hwang, J., Strange, N., Phillips, M. J. A., Krause, A. L., Heywood, A., Gamble, A. B., … Tyndall, J. D. A. (2021). Optimization of peptide-based inhibitors targeting the HtrA serine protease in Chlamydia: Design, synthesis and biological evaluation of pyridone-based and N-Capping group-modified analogues. European Journal of Medicinal Chemistry, 224(113692). doi: 10.1016/j.ejmech.2021.113692

Ji, A., Shaukat, A., Takei, R., Bixley, M., Cadzow, M., Topless, R. K., Major, T. J., Phipps-Green, A., Merriman, M. E., … Stamp, L. K., Dalbeth, N., … Merriman, T. R. (2021). Aotearoa New Zealand Māori and Pacific population-specific gout risk variants: CLNK is a separate risk gene at the SLC2A9 locus. Journal of Rheumatology, 48, 1736-1744. doi: 10.3899/jrheum.201684

Kenny, N. J., & Itskovich, V. B. (2021). Phylogenomic inference of the interrelationships of Lake Baikal sponges. Systematics & Biodiversity, 19(2), 209-217. doi: 10.1080/14772000.2020.1827077

Klionsky, D. J., Abdel-Aziz, A. K., Abdelfatah, S., Abdellatif, M., Abdoli, A., Abel, S., … Hughes, S. M., … Katare, R. G., … Tong, C.-K. (2021). Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy, 17(1), 1-382. doi: 10.1080/15548627.2020.1797280

Knapp, K. M., Jenkins, D. E., Sullivan, R., Harms, F. L., von Elsner, L., Ockeloen, C. W., … Bicknell, L. S. (2021). MCM complex members MCM3 and MCM7 are associated with a phenotypic spectrum from Meier-Gorlin syndrome to lipodystrophy and adrenal insufficiency. European Journal of Human Genetics, 29, 1110-1120. doi: 10.1038/s41431-021-00839-4

Kumar, M., Padala, P., Fahoum, J., Hassouna, F., Tsaban, T., Zoltsman, G., … Wiener, R. (2021). Structural basis for UFM1 transfer from UBA5 to UFC1. Nature Communications, 12, 5708. doi: 10.1038/s41467-021-25994-6

Lamichhane, R., Munro, F., Harrop, T. W. R., de la Harpe, S. M., Dearden, P. K., Vernall, A. J., McCall, J. L., & Ussher, J. E. (2021). Human liver-derived MAIT cells differ from blood MAIT cells in their metabolism and response to TCR-independent activation. European Journal of Immunology, 51, 879-892. doi: 10.1002/eji.202048830

Lawley, B., Grant, J., Harfoot, R., Treece, J. M., Day, R., Hernández, L. C., Stanton, J.-A. L., Ussher, J. E., & Quiñones‑Mateu, M. E. (2021). Rapid response to SARS-CoV-2 in Aotearoa New Zealand: Implementation of a diagnostic test and characterization of the first COVID-19 cases in the South Island. Viruses, 13(11), 2222. doi: 10.3390/v13112222

Leask, M. P., & Merriman, T. R. (2021). The genetic basis of urate control and gout: Insights into molecular pathogenesis from follow-up study of genome-wide association study loci. Best Practice & Research: Clinical Rheumatology, 35, 101721. doi: 10.1016/j.berh.2021.101721

Leask, M., Lovegrove, M., Romeril, A., Duncan, E., & Dearden, P. (2021). Evolution and genomic organization of the insect sHSP gene cluster and coordinate regulation in phenotypic plasticity. BMC Ecology & Evolution, 21, 154. doi: 10.1186/s12862-021-01885-8

Legge, M., & Fitzgerald, R. (2021). Does the Human Assisted Reproductive Technology Act 2004 need a review? Policy Quarterly, 17(1), 79-83.

Li, X., Sun, W., Lu, J., He, Y., Chen, Y., Ren, W., … Merriman, T. R., & Li, C. (2021). Effects of fenofibrate therapy on renal function in primary gout patients. Rheumatology, 60, 5020-5027. doi: 10.1093/rheumatology/keab231

Lim, C. S., Sozzi, V., Littlejohn, M., Yuen, L. K. W., Warner, N., Betz-Stablein, B., … Brown, C. M. (2021). Quantitative analysis of the splice variants expressed by the major hepatitis B virus genotypes. Microbial Genomics, 7, 000492. doi: 10.1099/mgen.0.000492

Lim, C. S., Weinstein, B. N., Roy, S. W., & Brown, C. M. (2021). Analysis of fungal genomes reveals commonalities of intron gain or loss and functions in intron-poor species. Molecular Biology & Evolution, 38(10), 4166-4186. doi: 10.1093/molbev/msab094

Lin, W., Farella, M., Antoun, J. S., Topless, R. K., Merriman, T. R., & Michelotti, A. (2021). Factors associated with orthodontic pain. Journal of Oral Rehabilitation, 48, 1135-1143. doi: 10.1111/joor.13227

Livingstone, R. W., Elder, M. K., Singh, A., Westlake, C. M., Tate, W. P., Abraham, W. C., & Williams, J. M. (2021). Secreted amyloid precursor protein-alpha enhances LTP through the synthesis and trafficking of Ca²⁺-permeable AMPA receptors. Frontiers in Molecular Neuroscience, 14, 660208. doi: 10.3389/fnmol.2021.660208

Luxenburger, A., Bougen-Zhukov, N., Fraser, M. G., Beetham, H., Harris, L. D., Schmidt, D., … Guilford, P. J., & Evans, G. B. (2021). Discovery of AL-GDa62 as a potential synthetic lethal lead for the treatment of gastric cancer. Journal of Medicinal Chemistry, 64, 18114-18142. doi: 10.1021/acs.jmedchem.1c01609

Madani, G., Lamping, E., & Cannon, R. D. (2021). Engineering a cysteine-deficient functional Candida albicans Cdr1 molecule reveals a conserved region at the cytosolic apex of ABCG transporters important for correct folding and trafficking of Cdr1. mSphere, 6(1), e01318-20. doi: 10.1128/mSphere.01318-20

Madani, G., Lamping, E., Lee, H. J., Niimi, M., Mitra, A. K., & Cannon, R. D. (2021). Small-scale plasma membrane preparation for the analysis of Candida albicans Cdr1-mGFPHis. Journal of Visualized Experiments, 172, e62592. doi: 10.3791/62592

Mandal, A. K., Leask, M. P., Estiverne, C., Choi, H. K., Merriman, T. R., & Mount, D. B. (2021). Genetic and physiological effects of insulin on human urate homeostasis. Frontiers in Physiology, 12, 713710. doi: 10.3389/fphys.2021.713710

Mayyas, I. M., Weeks, R. J., Day, R. C., Magrath, H. E., O’Connor, K. M., Kardailsky, O., Hore, T. A., Hampton, M. B., & Morison, I. M. (2021). Hairpin-bisulfite sequencing of cells exposed to decitabine documents the process of DNA demethylation. Epigenetics, 16(11), 1251-1259. doi: 10.1080/15592294.2020.1861169

McCartney, A. M., Hilario, E., Choi, S.-S., Guhlin, J., Prebble, J. M., Houliston, G., … Chagné, D. (2021). An exploration of assembly strategies and quality metrics on the accuracy of the rewarewa (Knightia excelsa) genome. Molecular Ecology Resources, 21, 2125-2144. doi: 10.1111/1755-0998.13406

McCormick, N., O'Connor, M. J., Yokose, C., Merriman, T. R., Mount, D. B., Leong, A., & Choi, H. K. (2021). Assessing the causal relationships between insulin resistance and hyperuricemia and gout using bidirectional Mendelian randomization. Arthritis & Rheumatology, 73(11), 2096-2104. doi: 10.1002/art.41779

McCulloch, G. A., Foster, B. J., Dutoit, L., Harrop, T. W. R., Guhlin, J., Dearden, P. K., & Waters, J. M. (2021). Genomics reveals widespread ecological speciation in flightless insects. Systematic Biology, 70(5), 863-876. doi: 10.1093/sysbio/syaa094

McCulloch, G. A., Guhlin, J., Dutoit, L., Harrop, T. W. R., Dearden, P. K., & Waters, J. M. (2021). Genomic signatures of parallel alpine adaptation in recently-evolved flightless insects. Molecular Ecology, 30, 6677-6686. doi: 10.1111/mec.16204

Middleton, A. J., Teyra, J., Zhu, J., Sidhu, S. S., & Day, C. L. (2021). Identification of ubiquitin variants that inhibit the E2 ubiquitin conjugating enzyme, Ube2k. ACS Chemical Biology, 16, 1745-1756. doi: 10.1021/acschembio.1c00445

Moore, M. P., Lamont, I. L., Williams, D., Paterson, S., Kukavica-Ibrulj, I., Tucker, N. P., … Winstanley, C. (2021). Transmission, adaptation and geographical spread of the Pseudomonas aeruginosa Liverpool epidemic strain. Microbial Genomics, 7, 000511. doi: 10.1099/mgen.0.000511

Muradova, E., Patel, N., Sell, B., Bittencourt, B. B., Ojeda, S. S., Adelmann, C. H., … Black, M. A., … Tsai, K. Y. (2021). Non-invasive assessment of epidermal genomic markers of UV exposure in skin. Journal of Investigative Dermatology, 141(1), 124-131.e2. doi: 10.1016/j.jid.2020.05.093

Murugayah, S. A., Evans, G. B., Tyndall, J. D. A., & Gerth, M. L. (2021). A single point mutation converts a glutaryl-7-aminocephalosporanic acid acylase into an N-acyl-homoserine lactone acylase. Biotechnology Letters, 43, 1467-1473. doi: 10.1007/s10529-021-03135-9

Nair, B. B., Khant Aung, Z., Porteous, R., Prescott, M., Glendining, K. A., Jenkins, D. E., Augustine, R. A., Silva, M. S. B., Yip, S. H., Bouwer, G. T., Brown, C. H., Jasoni, C. L., Campbell, R. E., Bunn, S. J., Anderson, G. M., Grattan, D. R., Herbison, A. E., & Iremonger, K. J. (2021). Impact of chronic variable stress on neuroendocrine hypothalamus and pituitary in male and female C57BL/6J mice. Journal of Neuroendocrinology, 33, e12972. doi: 10.1111/jne.12972

Narang, R. K., Gamble, G. G., Topless, R., Cadzow, M., Stamp, L. K., Merriman, T. R., & Dalbeth, N. (2021). Assessing the relationship between serum urate and urolithiasis using Mendelian randomization: An analysis of the UK Biobank. American Journal of Kidney Diseases, 78(2), 210-218. doi: 10.1053/j.ajkd.2020.11.018

Nilsen, A. R., Macrae, O. C., Andrew, K., Wang, X. Y., Te Tana, M. C., Soop, K., Brown, C. M., Summerfield, T. C., & Orlovich, D. A. (2021). Studies of New Zealand Cortinarius: Resolution of taxonomic conflicts in section Subcastanelli (Agaricales), new species and key to rozitoid species. New Zealand Journal of Botany, 59(4), 457-475. doi: 10.1080/0028825X.2021.1879877

Noble, A. J., Pearson, J. F., Boden, J. M., Horwood, L. J., Gemmell, N. J., Kennedy, M. A., & Osborne, A. J. (2021). A validation of Illumina EPIC array system with bisulfite-based amplicon sequencing. PeerJ, 9, e10762. doi: 10.7717/peerj.10762

Oliphant, A., & Thatje, S. (2021). Variable shrimp in variable environments: Reproductive investment within Palaemon varians. Hydrobiologia, 848, 469-484. doi: 10.1007/s10750-020-04455-z

Pandey, K., Yu, X.-W., Steinmetz, A., & Alberini, C. M. (2021). Autophagy coupled to translation is required for long-term memory. Autophagy, 17(7), 1614-1635. doi: 10.1080/15548627.2020.1775393

Panthi, S., Lyons, N. M. A., & Leitch, B. (2021). Impact of dysfunctional feed-forward inhibition on glutamate decarboxylase isoforms and γ-aminobutyric acid transporters. International Journal of Molecular Sciences, 22(14), 7740. doi: 10.3390/ijms22147740

Pechmann, M., Kenny, N. J., Pott, L., Heger, P., Chen, Y.-T., Buchta, T., … Roth, S. (2021). Striking parallels between dorsoventral patterning in Drosophila and Gryllus reveal a complex evolutionary history behind a model gene regulatory network. eLIFE, 10, e68287. doi: 10.7554/eLife.68287

Petersen, G. E. L., Fennessy, P. F., & Dearden, P. K. (2021). Management tools for genetic diversity in an isolated population of the honeybee (Apis mellifera) in New Zealand. Animal Production Science, 61, 1856-1862. doi: 10.1071/An21102

Philem, P., Kleffmann, T., Gai, S., Hawkins, B. C., Wilbanks, S. M., & Lamont, I. L. (2021). Identification of active site residues of the siderophore synthesis enzyme PvdF and evidence for interaction of PvdF with a substrate-providing enzyme. International Journal of Molecular Sciences, 22(4), 2211. doi: 10.3390/ijms22042211

Pinkney, H. R., Black, M. A., & Diermeier, S. D. (2021). Single-cell RNA-seq reveals heterogeneous lncRNA expression in xenografted triple-negative breast cancer cells. Biology, 10(10), 987. doi: 10.3390/biology10100987

Plese, B., Kenny, N. J., Rossi, M. E., Cárdenas, P., Schuster, A., Taboada, S., … Riesgo, A. (2021). Mitochondrial evolution in the Demospongiae (Porifera): Phylogeny, divergence time, and genome biology. Molecular Phylogenetics & Evolution, 155, 107011. doi: 10.1016/j.ympev.2020.107011

Pullikuth, A. K., Routh, E. D., Zimmermann, K. D., Chifman, J., Chou, J. W., Soike, M. H., … Black, M. A., … Miller, L. D. (2021). Bulk and single-cell profiling of breast tumors identifies TREM-1 as a dominant immune suppressive marker associated with poor outcomes. Frontiers in Oncology, 11, 734959. doi: 10.3389/fonc.2021.734959

Ramsay, K. A., McTavish, S. M., Wardell, S. J. T., & Lamont, I. L. (2021). The effects of sub-inhibitory antibiotic concentrations on Pseudomonas aeruginosa: Reduced susceptibility due to mutations. Frontiers in Microbiology, 12, 789550. doi: 10.3389/fmicb.2021.789550

Ran, Z., Xue, X., Han, L., Terkeltaub, R., Merriman, T. R., Zhao, T., … Li, C. (2021). Decrease in serum urate level is associated with loss of visceral fat in male gout patients. Frontiers in Endocrinology, 12, 724822. doi: 10.3389/fendo.2021.724822

Rana, Z., Diermeier, S., Walsh, F. P., Hanif, M., Hartinger, C. G., & Rosengren, R. J. (2021). Anti-proliferative, anti-angiogenic and safety profiles of novel HDAC inhibitors for the treatment of metastatic castration-resistant prostate cancer. Pharmaceuticals, 14, 1020. doi: 10.3390/ph14101020

Rehman, A., Jeukens, J., Levesque, R. C., & Lamont, I. L. (2021). Gene-gene interactions dictate ciprofloxacin resistance in Pseudomonas aeruginosa and facilitate prediction of resistance phenotype from genome sequence data. Antimicrobial Agents & Chemotherapy, 65(7), e02696. doi: 10.1128/aac.02696-20

Reynolds, R. J., Irvin, M. R., Bridges, S. L., Kim, H., Merriman, T. R., Arnett, D. K., … Vazquez, A. I. (2021). Genetic correlations between traits associated with hyperuricemia, gout, and comorbidities. European Journal of Human Genetics, 29, 1438-1445. doi: 10.1038/s41431-021-00830-z

Riesgo, A., Taboada, S., Kenny, N. J., Santodomingo, N., Moles, J., Leiva, C., … Maldonado, M. (2021). Recycling resources: Silica of diatom frustules as a source for spicule building in Antarctic siliceous demosponges. Zoological Journal of the Linnean Society, 192(2), 259-276. doi: 10.1093/zoolinnean/zlaa058

Robinson, P. C., Frampton, C., Phipps-Green, A., Neogi, T., Stamp, L., Taylor, W., Merriman, T. R., & Dalbeth, N. (2021). Longitudinal development of incident gout from low-normal baseline serum urate concentrations: Individual participant data analysis. BMC Rheumatology, 5(1), 33. doi: 10.1186/s41927-021-00204-4

Rossig, C., Le Lievre, L., Pilkington, S. M., & Brownfield, L. (2021). A simple and rapid method for imaging male meiotic cells in anthers of model and non-model plant species [Method paper]. Plant Reproduction, 34, 37-46. doi: 10.1007/s00497-021-00404-5

Ruberto, F. P., Balzano, S., Namburi, P., Kimchi, A., Pescini-Gobert, R., Obolensky, A., … Rivolta, C. (2021). Heterozygous deletions of noncoding parts of the PRPF31 gene cause retinitis pigmentosa via reduced gene expression. Molecular Vision, 27, 107-116. Retrieved from molvis.org/molvis/v27/107

Ryan, M., Tan, V. T. Y., Thompson, N., Guévremont, D., Mockett, B. G., Tate, W. P., Abraham, W. C., Hughes, S. M., & Williams, J. (2021). Lentivirus-mediated expression of human secreted amyloid precursor protein-alpha promotes long-term induction of neuroprotective genes and pathways in a mouse model of Alzheimer’s disease. Journal of Alzheimer's Disease, 79, 1075-1090. doi: 10.3233/JAD-200757

Safarian, S., Opel-Reading, H. K., Wu, D., Mehdipour, A. R., Hards, K., Harold, L. K., … Stewart, I., … Cook, G. M., Krause, K. L., & Michel, H. (2021). The cryo-EM structure of the bd oxidase from M. tuberculosis reveals a unique structural framework and enables rational drug design to combat TB. Nature Communications, 12(1), 5236. doi: 10.1038/s41467-021-25537-z

Samarth, Lee, R., Kelly, D., Turnbull, M. H., Macknight, R. C., Poole, A. M., & Jameson, P. E. (2021). Molecular control of the floral transition in the mast seeding plant Celmisia lyallii (Asteraceae). Molecular Ecology, 30, 1846-1863. doi: 10.1111/mec.15859

Schweiger, R., Padilla-Arizmendi, F., Nogueira-Lopez, G., Rostás, M., Lawry, R., Brown, C., … Mendoza-Mendoza, A. (2021). Insights into metabolic changes caused by the Trichoderma virens-maize root interaction. Molecular Plant-Microbe Interactions, 34(5), 524-537. doi: 10.1094/mpmi-04-20-0081-r

Seo, S., Sizemore, R. J., Reader, K. L., Smither, R. A., Wicky, H. E., Hughes, S. M., Bilkey, D. K., Parr-Brownlie, L. C., & Oorschot, D. E. (2021). A schizophrenia risk factor induces marked anatomical deficits at GABAergic-dopaminergic synapses in the rat ventral tegmental area: Essential evidence for new targeted therapies. Journal of Comparative Neurology, 529, 3946-3973. doi: 10.1002/cne.25225

Shain, D., Novis, P. M., Cridge, A. G., Zawierucha, K., Geneva, A. J., & Dearden, P. K. (2021). Five animal phyla in glacier ice reveal unprecedented biodiversity in New Zealand's Southern Alps. Scientific Reports, 11(1), 3898. doi: 10.1038/s41598-021-83256-3

Shen, X., Wang, C., Liang, N., Liu, Z., Li, X., Zhu, Z.-J., Merriman, T. R., Dalbeth, N., … Yin, H. (2021). Serum metabolomics identifies dysregulated pathways and potential metabolic biomarkers for hyperuricemia and gout. Arthritis & Rheumatology, 73(9), 1738-1748. doi: 10.1002/art.41733

Sitter, T. L., Vaughan, A. L., Schoof, M., Jackson, S. A., Glare, T. R., Cox, M. P., Fineran, P. C., Gardner, P. P., & Hurst, M. R. H. (2021). Evolution of virulence in a novel family of transmissible mega-plasmids. Environmental Microbiology, 23(9), 5289-5304. doi: 10.1111/1462-2920.15595

Smith, J., Banerjee, R., Waly, R., Urbano, A., Gimenez, G., Day, R., Eccles, M. R., Weeks, R. J., & Chatterjee, A. (2021). Locus-specific DNA methylation editing in melanoma cell lines using a CRISPR-based system. Cancers, 13, 5433. doi: 10.3390/cancers13215433

Smith, L. M., Jackson, S. A., Malone, L. M., Ussher, J. E., Gardner, P. P., & Fineran, P. C. (2021). The Rcs stress response inversely controls surface and CRISPR–Cas adaptive immunity to discriminate plasmids and phages. Nature Microbiology, 6, 162-172. doi: 10.1038/s41564-020-00822-7

Stanton, J.-A. L., O'Brien, R., Hall, R. J., Chernyavtseva, A., Ha, H. J., Jelley, L., Mace, P. D., … Treece, J. M., … Ussher, J. E., … Hore, T. A., Moser, T. V., Harfoot, R., Lawley, B., Quiñones‑Mateu, M. E., … Blaikie, R. (2021). Uncoupling molecular testing for SARS-CoV-2 from international supply chains. Frontiers in Public Health, 9, 808751. doi: 10.3389/fpubh.2021.808751

Sunde, H., Ryder, K., Bekhit, A. E.-D. A., & Carne, A. (2021). Analysis of peptides in a sheep beta lactoglobulin hydrolysate as a model to evaluate the effect of peptide amino acid sequence on bioactivity. Food Chemistry, 365, 130346. doi: 10.1016/j.foodchem.2021.130346

Taiaroa, G., Matalavea, B., Tafuna'i, M., Lacey, J. A., Price, D. J., Isaia, L., Leaupepe, H., … Williamson, D. A., & Jack, S. (2021). Scabies and impetigo in Samoa: A school-based clinical and molecular epidemiological study. Lancet Regional Health: Western Pacific, 6, 100081. doi: 10.1016/j.lanwpc.2020.100081

Takei, R., Cadzow, M., Markie, D., Bixley, M., Phipps-Green, A., Major, T. J., … Stamp, L. K., … Merriman, T. R., & Wei, W.-H. (2021). Trans-ancestral dissection of urate- and gout-associated major loci SLC2A9 and ABCG2 reveals primate-specific regulatory effects. Journal of Human Genetics, 66, 161-169. doi: 10.1038/s10038-020-0821-z

Te Morenga, L., Kruimer, D., McLean, R., Sabadel, A. J. M., Van Hale, R., Tatin, X., … Mann, J., & Merriman, T. (2021). Associations between sugars intakes and urinary sugars excretion and carbon stable isotope ratios in red blood cells as biomarkers of sugars intake in a predominantly Māori population. Frontiers in Nutrition, 8, 637267. doi: 10.3389/fnut.2021.637267

Thomas, L. J., Liggins, L., Banks, S. C., Beheregaray, L. B., Liddy, M., McCulloch, G. A., Waters, J. M., … Cumming, R. A., & Lamare, M. D. (2021). The population genetic structure of the urchin Centrostephanus rodgersii in New Zealand with links to Australia. Marine Biology, 168, 138. doi: 10.1007/s00227-021-03946-4

Timaxian, C., Vogel, C. F. A., Orcel, C., Vetter, D., Durochat, C., Chinal, C., … Diermeier, S. D., … Lazennec, G. (2021). Pivotal role for Cxcr2 in regulating tumor-associated neutrophil in breast cancer. Cancers, 13(11), 2584. doi: 10.3390/cancers13112584

Topless, R. K. G., Major, T. J., Florez, J. C., Hirschhorn, J. N., Cadzow, M., Dalbeth, N., Stamp, L. K., Wilcox, P. L., … Merriman, T. R. (2021). The comparative effect of exposure to various risk factors on the risk of hyperuricaemia: Diet has a weak causal effect. Arthritis Research & Therapy, 23(1), 75. doi: 10.1186/s13075-021-02444-8

Topless, R. K., Phipps-Green, A., Leask, M., Dalbeth, N., Stamp, L. K., Robinson, P. C., & Merriman, T. R. (2021). Gout, rheumatoid arthritis, and the risk of death related to coronavirus disease 2019: An analysis of the UK Biobank. ACR Open Rheumatology, 3(5), 333-340. doi: 10.1002/acr2.11252

Wang, Y., Morton, J. D., Bekhit, A. E.-D. A., Carne, A., & Mason, S. L. (2021). Amino acid sequences of lactoferrin from red deer (Cervus elaphus) milk and antimicrobial activity of its derived peptides lactoferricin and lactoferrampin. Foods, 10(6), 1305. doi: 10.3390/foods10061305

Wardell, S. J. T., Gauthier, J., Martin, L. W., Potvin, M., Brockway, B., Levesque, R. C., & Lamont, I. L. (2021). Genome evolution drives transcriptomic and phenotypic adaptation in Pseudomonas aeruginosa during 20 years of infection. Microbial Genomics, 7(11), 681. doi: 10.1099/mgen.0.000681

Wiggins, G. A. R., Black, M. A., Dunbier, A., Merriman, T. R., Pearson, J. F., & Walker, L. C. (2021). Variable expression quantitative trait loci analysis of breast cancer risk variants. Scientific Reports, 11(1), 7192. doi: 10.1038/s41598-021-86690-5

Wiggins, G. A. R., Black, M. A., Dunbier, A., Morley-Bunker, A. E., kConFab Investigators, Pearson, J. F., & Walker, L. C. (2021). Increased gene expression variability in BRCA1-associated and basal-like breast tumours. Breast Cancer Research & Treatment, 189, 363-375. doi: 10.1007/s10549-021-06328-y

Wold, J., Koepfli, K.-P., Galla, S. J., Eccles, D., Hogg, C. J., Le Lec, M. F., Guhlin, J., Santure, A. W., & Steeves, T. E. (2021). Expanding the conservation genomics toolbox: Incorporating structural variants to enhance genomic studies for species of conservation concern. Molecular Ecology, 30, 5949-5965. doi: 10.1111/mec.16141

Wu, R., Cooney, J., Tomes, S., Rebstock, R., Karunairetnam, S., Allan, A. C., Macknight, R. C., & Varkonyi-Gasic, E. (2021). RNAi-mediated repression of dormancy-related genes results in evergrowing apple trees. Tree Physiology, 41, 1510-1523. doi: 10.1093/treephys/tpab007

Xiong, H., Veedu, R. N., & Diermeier, S. D. (2021). Recent advances in oligonucleotide therapeutics in oncology. International Journal of Molecular Sciences, 22(7), 3295. doi: 10.3390/ijms22073295

Xue, X., Liu, Z., Li, X., Lu, J., Wang, C., Wang, X., … Merriman, T. R., … Cui, L. (2021). The efficacy and safety of citrate mixture vs sodium bicarbonate on urine alkalization in Chinese primary gout patients with benzbromarone: A prospective, randomized controlled study. Rheumatology, 60, 2661-2671. doi: 10.1093/rheumatology/keaa668

Zhang, H., Li, H., Phipps Green, A., Wang, M., Yan, F., Li, M., … Merriman, T. R., & Li, C. (2021). Association of low-level environmental exposure to cadmium and lead with gout flare using a cohort study design. Chemosphere, 280, 130648. doi: 10.1016/j.chemosphere.2021.130648

Ahmmed, M. K., Ahmmed, F., Tian, H., Carne, A., & Bekhit, A. E.-D. (2020). Marine omega-3 (n-3) phospholipids: A comprehensive review of their properties, sources, bioavailability, and relation to brain health. Comprehensive Reviews in Food Science & Food Safety, 19(1), 64-123. doi: 10.1111/1541-4337.12510

Ahmmed, M. K., Bunga, S., Stewart, I., Tian, H., Carne, A., & Bekhit, A. E.-D. A. (2020). Simple and efficient one-pot extraction method for phospholipidomic profiling of total oil and lecithin by phosphorus-31 nuclear magnetic resonance measurements. Journal of Agricultural & Food Chemistry, 61, 14286-14296. doi: 10.1021/acs.jafc.0c05803

Aitchison, A., Hakkaart, C., Day, R. C., Morrin, H. R., Frizelle, F. A., & Keenan, J. I. (2020). APC mutations are not confined to hotspot regions in early-onset colorectal cancer. Cancers, 12, 3829. doi: 10.3390/cancers12123829

Akhavan, S. R., Falahatkar, B., McCormick, S. P. A., & Lokman, P. M. (2020). Changes in lipid biology during ovarian development in farmed beluga sturgeon, Huso huso L. American Journal of Physiology: Regulatory, Integrative & Comparative Physiology, 319, R376-R386. doi: 10.1152/ajpregu.00364.2019

Alexander, J. L., Oliphant, A., Wilcockson, D. C., Brendler-Spaeth, T., Dircksen, H., & Webster, S. G. (2020). Pigment dispersing factors and their cognate receptors in a crustacean model, with new insights into distinct neurons and their functions. Frontiers in Neuroscience, 14, 595648. doi: 10.3389/fnins.2020.595648

Best, H. L., Clare, A. J., McDonald, K. O., Wicky, H. E., & Hughes, S. M. (2020). An altered secretome is an early marker of the pathogenesis of CLN6 Batten disease. Journal of Neurochemistry, 157, 764-780. doi: 10.1111/jnc.15285

Bhandari, B. K., Gardner, P. P., & Lim, C. S. (2020). Solubility-Weighted Index: Fast and accurate prediction of protein solubility. Bioinformatics, 36(18), 4691-4698. doi: 10.1093/bioinformatics/btaa578

Bhatlekar, S., Manne, B. K., Basak, I., Edelstein, L. C., Tugolukova, E., Stoller, M. L., … Bray, P. F. (2020). miR-125a-5p regulates megakaryocyte proplatelet formation via the actin bundling protein L-plastin. Blood, 136(15), 1760-1772. doi: 10.1182/blood.2020005230

Biggs, H., Parthasarathy, P., Gavryushkina, A., & Gardner, P. P. (2020). ncVarDB: A manually curated database for pathogenic non-coding variants and benign controls. Database, baaa105. doi: 10.1093/database/baaa105

Bodofsky, S., Merriman, T. R., Thomas, T. J., & Schlesinger, N. (2020). Advances in our understanding of gout as an auto-inflammatory disease. Seminars in Arthritis & Rheumatism, 50, 1089-1100. doi: 10.1016/j.semarthrit.2020.06.015

Boocock, J., Leask, M., Okada, Y., Asian Genetic Epidemiology Network (AGEN) Consortium, Matsuo, H., Shi, Y., … Cadzow, M., Gosling, A. L., Major, T. J., Horsfield, J. A., … Merriman, T. R. (2020). Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control. Human Molecular Genetics, 29(6), 923-943. doi: 10.1093/hmg/ddaa013

Bougen-Zhukov, N. M., Lee, Y. Y., Lee, J.-Y. J., Lee, P., & Loo, L.-H. (2020). P13K catalytic subunits α and β modulate cell death and IL-6 secretion induced by talc particles in human lung carcinoma cells. American Journal of Respiratory Cell & Molecular Biology, 62(3), 331-341. doi: 10.1165/rcmb.2019-0050OC

Brewer, N., Atkinson, J., Guilford, P., Print, C., Blakely, T., & Teng, A. (2020). An estimate of limited duration cancer prevalence in New Zealand using 'big' data. New Zealand Medical Journal, 133(1514), 49-62. Retrieved from https://www.nzma.org.nz/journal

Brown, A., Thatje, S., Pond, D., & Oliphant, A. (2020). Phospholipid fatty acids are correlated with critical thermal tolerance but not with critical pressure tolerance in the shallow-water shrimp Palaemon varians during sustained exposure to low temperature. Journal of Experimental Marine Biology & Ecology, 529, 151394. doi: 10.1016/j.jembe.2020.151394

Burrow, K., Young, W., Hammer, N., Safavi, S., Scholze, M., McConnell, M., Carne, A., Barr, D., Reid, M., & Bekhit, A. E.-D. (2020). The effect of the supplementation of a diet low in calcium and phosphorus with either sheep milk or cow milk on the physical and mechanical characteristics of bone using a rat model. Foods, 9(8), 1070. doi: 10.3390/foods9081070

Burrow, K., Young, W., McConnell, M., Carne, A., Barr, D., Reid, M., & Bekhit, A. E.-D. (2020). The effect of sheep and cow milk supplementation of a low calcium diet on the distribution of macro and trace minerals in the organs of weanling rats. Nutrients, 12(3), 594. doi: 10.3390/nu12030594

Calvo-Flores Guzmán, B., Chaffey, T. E., Palpagama, T. H., Waters, S., Boix, J., Tate, W. P., Peppercorn, K., … Kwakowsky, A. (2020). The interplay between beta-amyloid 1-42 (Aβ_1-42)-induced hippocampal inflammatory response, p-tau, vascular pathology, and their synergistic contributions to neuronal death and behavioral deficits. Frontiers in Molecular Neuroscience, 13, 522073. doi: 10.3389/fnmol.2020.552073

Chang, K.-C., Diermeier, S. D., Yu, A. T., Brine, L. D., Russo, S., Bhatia, S., … Spector, D. L. (2020). MaTAR25 lncRNA regulates the Tensin1 gene to impact breast cancer progression. Nature Communications, 11, 6438. doi: 10.1038/s41467-020-20207-y

Chapman, L. M., Spies, N., Pai, P., Lim, C. S., Carroll, A., Narzisi, G., … Zook, J. M. (2020). A crowdsourced set of curated structural variants for the human genome. PLoS Computational Biology, 16(6), e1007933. doi: 10.1371/journal.pcbi.1007933

Chen, H., Zhao, L., Liu, F., Chen, S., Hu, Z., Chen, L., … Merriman, T. R., & Min, J. Z. (2020). Urate in fingernail represents the deposition of urate burden in gout patients. Scientific Reports, 10, 15575. doi: 10.1038/s41598-020-72505-6

Chin, C. V., Antony, J., Ketharnathan, S., Labudina, A., Gimenez, G., Parsons, K. M., … Braithwaite, A., Guilford, P., … Horsfield, J. A. (2020). Cohesin mutations are synthetic lethal with stimulation of WNT signaling. eLIFE, 9, e61405. doi: 10.7554/eLife.61405

Chung, P., Logge, W. B., Riordan, B. C., Haber, P. S., Merriman, M. E., Phipps-Green, A., Topless, R. K., Merriman, T. R., Conner, T., & Morley, K. C. (2020). Genetic polymorphisms on OPRM1, DRD2, DRD4, and COMT in young adults: Lack of association with alcohol consumption. Frontiers in Psychiatry, 11, 549429. doi: 10.3389/fpsyt.2020.549429

Chyou, T.-y., Nishtala, R., & Nishtala, P. S. (2020). Comparative risk of Parkinsonism associated with olanzapine, risperidone and quetiapine in older adults: A propensity score matched cohort study. Pharmacoepidemiology & Drug Safety, 29, 692-700. doi: 10.1002/pds.5007

Desguin, B., Urdiain-Arraiza, J., Da Costa, M., Fellner, M., Hu, J., Hausinger, R. P., … Soumillion, P. (2020). Uncovering a superfamily of nickel-dependent hydroxyacid racemases and epimerases. Scientific Reports, 10, 18123. doi: 10.1038/s41598-020-74802-6

Duncan, E. J., Leask, M. P., & Dearden, P. K. (2020). Genome architecture facilitates phenotypic plasticity in the honeybee (Apis mellifera). Molecular Biology & Evolution, 37(7), 1964-1978. doi: 10.1093/molbev/msaa057

Eom, J., Park, S. M., Feisst, V., Chen, C.-J. J., Mathy, J. E., McIntosh, J. D., … Black, M. A., … Dunbar, P. R. (2020). Distinctive subpopulations of stromal cells are present in human lymph nodes infiltrated with melanoma. Cancer Immunology Research, 8(8), 1-14. doi: 10.1158/2326-6066.Cir-19-0796

Fagerlund, R. D., Forsman, J. A., Biswas, S., Vass, I., Davies, F. K., Summerfield, T. C., & Eaton-Rye, J. J. (2020). Stabilization of Photosystem II by the PsbT protein impacts photodamage, repair and biogenesis. Biochimica et Biophysica Acta: Bioenergetics, 1861, 148234. doi: 10.1016/j.bbabio.2020.148234

Fellner, M., Huizenga, K. G., Hausinger, R. P., & Hu, J. (2020). Crystallographic characterization of a tri-Asp metal-binding site at the three-fold symmetry axis of LarE. Scientific Reports, 10, 5830. doi: 10.1038/s41598-020-62847-6

Fellner, M., Lentz, C. S., Jamieson, S. A., Brewster, J. L., Chen, L., Bogyo, M., & Mace, P. D. (2020). Structural basis for the inhibitor and substrate specificity of the unique Fph serine hydrolases of Staphylococcus aureus. ACS Infectious Diseases, 6(10), 2771-2782. doi: 10.1021/acsinfecdis.0c00503

Ferraro-Peyret, C., Askarian-Amiri, M. E., Sarkar, D., Joseph, W. R., Hansji, H., Baguley, B. C., & Leung, E. Y. (2020). SOX2OT long noncoding RNA is regulated by the UPR in oestrogen receptor-positive breast cancer. Sci, 2(2), 24. doi: 10.3390/sci2020024

Filipčík, P., Latham, S. L., Cadell, A. L., Day, C. L., Croucher, D. R., & Mace, P. D. (2020). A cryptic tubulin-binding domain links MEKK1 to curved tubulin protomers. PNAS, 117(35), 21308-21318. doi: 10.1073/pnas.2006429117

Forsman, J. A., & Eaton-Rye, J. J. (2020). The D1:Ser268 residue of Photosystem II contributes to an alternative pathway for Q_B protonation in the absence of bound bicarbonate. FEBS Letters, 594(18), 2953-2964. doi: 10.1002/1873-3468.13880

Forsman, J. A., Fagerlund, R. D., Biswas, S., Summerfield, T. C., & Eaton-Rye, J. J. (2020). The PsbT protein modifies the bicarbonate-binding environment of Photosystem II. New Zealand Journal of Botany, 58(4), 406-421. doi: 10.1080/0028825X.2020.1772320

Gemmell, N. J., Rutherford, K., Prost, S., Tollis, M., Winter, D., Macey, J. R., … Gardner, P. P., … Hore, T. A., … Dussex, N., Taylor, H., Abe, H., Bond, D. M., … Ngatiwai Trust Board. (2020). The tuatara genome reveals ancient features of amniote evolution. Nature, 584, 403-409. doi: 10.1038/s41586-020-2561-9

Good, N. M., Fellner, M., Demirer, K., Hu, J., Hausinger, R. P., & Martinez-Gomez, N. C. (2020). Lanthanide-dependent alcohol dehydrogenases require an essential aspartate residue for metal coordination and enzymatic function. Journal of Biological Chemistry, 295(24), 8272-8284. doi: 10.1074/jbc.RA120.013227

Handley, T. N. G., Tan, H.-X., Rutledge, M. T., Brewitz, H. H., Tyndall, J. D. A., Kleffmann, T., Butler, M. I., Poulter, R. T. M., & Wilbanks, S. M. (2020). Engineered biosynthesis of cyclotides. New Zealand Journal of Botany, 58(4), 358-377. doi: 10.1080/0028825X.2020.1791914

Harrop, T. W. R., Guhlin, J., McLaughlin, G. M., Permina, E., Stockwell, P., Gilligan, J., Le Lec, M. F., Gruber, M. A. M., … Lovegrove, M., … Dearden, P. K. (2020). High-quality assemblies for three invasive social wasps from the Vespula genus. Genes Genomes Genetics, 10, 3479-3488. doi: 10.1534/g3.120.401579

Harrop, T. W. R., Le Lec, M. F., Jauregui, R., Taylor, S. E., Inwood, S. N., van Stijn, T., … Skelly, J., … Dearden, P. K. (2020). Genetic diversity in invasive populations of Argentine stem weevil associated with adaptation to biocontrol. Insects, 11(7), 441. doi: 10.3390/insects11070441

Helliwell, A. M., Sweetman, E. C., Stockwell, P. A., Edgar, C. D., Chatterjee, A., & Tate, W. P. (2020). Changes in DNA methylation profiles of myalgic encephalomyelitis/chronic fatigue syndrome patients reflect systemic dysfunctions. Clinical Epigenetics, 12(1), 167. doi: 10.1186/s13148-020-00960-z

Herridge, R. P., Macknight, R. C., & Brownfield, L. R. (2020). Prospects for F1 hybrid production in ryegrass. New Zealand Journal of Agricultural Research, 63(3), 405-415. doi: 10.1080/00288233.2018.1559867

Ho, J., Zhao, M., Wojcik, S., Taiaroa, G., Butler, M., & Poulter, R. (2020). The application of the CRISPR-Cas9 system in Pseudomonas syringae pv. actinidiae. Journal of Medical Microbiology, 69, 478-486. doi: 10.1099/jmm.0.001124

Hoque, K. M., Dixon, E. E., Lewis, R. M., Allan, J., Gamble, G. D., Phipps-Green, A. J., … Stamp, L. K., Merriman, T. R., … Woodward, O. M. (2020). The ABCG2 Q141K hyperuricemia and gout associated variant illuminates the physiology of human urate excretion. Nature Communications, 11, 2767. doi: 10.1038/s41467-020-16525-w

Hou, Y., Carne, A., McConnell, M., Bekhit, A. A., Mros, S., Amagase, K., & Bekhit, A. E.-D. A. (2020). In vitro antioxidant and antimicrobial activities, and in vivo anti-inflammatory activity of crude and fractionated PHNQs from sea urchin (Evechinus chloroticus). Food Chemistry, 316, 126339. doi: 10.1016/j.foodchem.2020.126339

Hou, Y., Carne, A., McConnell, M., Mros, S., Bekhit, A. A., & Bekhit, A. E.-D. A. (2020). Macroporous resin extraction of PHNQs from Evechinus chloroticus sea urchin and their in vitro antioxidant, anti-bacterial and in silico anti-inflammatory activities. LWT, 131, 109817. doi: 10.1016/j.lwt.2020.109817

Hou, Y., Carne, A., McConnell, M., Mros, S., Vasileva, E. A., Mishchenko, N. P., Burrow, K., Wang, K., … Bekhit, A. E.-D. A. (2020). PHNQ for Evechinus chloroticus sea urchin supplemented with calcium promotes mineralization in Saos-2 human bone cell line. Marine Drugs, 18(7), 373. doi: 10.3390/md18070373

Huber, R. J., Hughes, S. M., Liu, W., Morgan, A., Tuxworth, R. I., & Russell, C. (2020). The contribution of multicellular model organisms to neuronal ceroid lipofuscinosis research. Biochimica et Biophysica Acta: Molecular Basis of Disease, 1866, 165614. doi: 10.1016/j.bbadis.2019.165614

Jones, G. T., Marsman, J., Bhat, B., Phillips, V. L., Chatterjee, A., Rodger, E. J., Williams, M. J. A., van Rij, A. M., & McCormick, S. P. A. (2020). DNA methylation profiling identifies a high effect genetic variant for lipoprotein(a) levels. Epigenetics, 15(9), 949-958. doi: 10.1080/15592294.2020.1739797

Kader, T., Porteous, C. M., Jones, G. T., Dickerhof, N., Narayana, V. K., Tull, D., Taraknath, S., & McCormick, S. P. A. (2020). Ribose-cysteine protects against the development of atherosclerosis in apoE-deficient mice. PLoS ONE, 15(2), e0228415. doi: 10.1371/journal.pone.0228415

Khaing, E. P., Zhong, V., & Eaton-Rye, J. J. (2020). An updated system for the targeted mutagenesis of the psbDI:psbC operon in Synechocystis sp. PCC 6803: Mutations targeting Asp460 in CP43 of Photosystem II reduce oxygen-evolving activity and perturb electron transfer in the quinone-Fe-acceptor complex. New Zealand Journal of Botany, 58(4), 389-405. doi: 10.1080/0028825X.2020.1771383

Kim, G. H., Lee, Y.-S., Jung, J. S., Koh, Y.-J., Poulter, R. T. M., & Butler, M. (2020). Genomic analyses of Pseudomonas syringae pv. actinidiae isolated in Korea suggest the transfer of the bacterial pathogen via kiwifruit pollen. Journal of Medical Microbiology, 69, 132-138. doi: 10.1099/jmm.0.001115

Klück, V., van Deuren, R. C., Cavalli, G., Shaukat, A., Arts, P., Cleophas, M. C., … Stamp, L. K., … Merriman, T. R., … Joosten, L. A. B. (2020). Rare genetic variants in interleukin-37 link this anti-inflammatory cytokine to the pathogenesis and treatment of gout. Annals of the Rheumatic Diseases, 79(4), 536-544. doi: 10.1136/annrheumdis-2019-216233

Knapp, K. M., Sullivan, R., Murray, J., Gimenez, G., Arn, P., D'Souza, P., … Bicknell, L. S. (2020). Linked-read genome sequencing identifies biallelic pathogenic variants in DONSON as a novel cause of Meier-Gorlin syndrome. Journal of Medical Genetics, 57, 195-202. doi: 10.1136/jmedgenet-2019-106396

Krishnan, M., Murphy, R., Okesene-Gafa, K. A. M., Ji, M., Thompson, J. M. D., Taylor, R. S., Merriman, T. R., … McKinlay, C. J. D. (2020). The Pacific-specific CREBRF rs373863828 allele protects against gestational diabetes mellitus in Māori and Pacific women with obesity. Diabetologia, 63(10), 2169-2176. doi: 10.1007/s00125-020-05202-8

Kvach, M. V., Barzak, F. M., Harjes, S., Schares, H. A. M., Kurup, H. M., Jones, K. F., … Krause, K. L., … Filichev, V. (2020). Differential inhibition of APOBEC3 DNA-mutator isozymes by fluoro- versus non-fluoro-substituted 2'-deoxyzebularine embedded in single-stranded DNA. ChemBioChem, 21, 1028-1035. doi: 10.1002/cbic.201900505

Lasham, A., Fitzgerald, S. J., Knowlton, N., Robb, T., Tsai, P., Black, M. A., … Mehta, S. Y., Harris, G., … Print, C. G. (2020). A predictor of early disease recurrence in patients with breast cancer using a cell-free RNA and protein liquid biopsy. Clinical Breast Cancer, 20(2), 108-116. doi: 10.1016/j.clbc.2019.07.003

Leask, M. P., Sumpter, N. A., Lupi, A. S., Vazquez, A. I., Reynolds, R. J., Mount, D. B., & Merriman, T. R. (2020). The shared genetic basis of hyperuricemia, gout, and kidney function. Seminars in Nephrology, 40(6), 586-599. doi: 10.1016/j.semnephrol.2020.12.002

Lester, P. J., Bulgarella, M., Baty, J. W., Dearden, P. K., Guhlin, J., & Kean, J. M. (2020). The potential for a CRISPR gene drive to eradicate or suppress globally invasive social wasps. Scientific Reports, 10, 12398. doi: 10.1038/s41598-020-69259-6

Lovegrove, M. R., Knapp, R. A., Duncan, E. J., & Dearden, P. K. (2020). Drosophila melanogaster and worker honeybees (Apis mellifera) do not require olfaction to be susceptible to honeybee queen mandibular pheromone. Journal of Insect Physiology, 127, 104154. doi: 10.1016/j.jinsphys.2020.104154

Lucere, K. M., O'Malley, M. M. R., & Diermeier, S. D. (2020). Functional screening techniques to identify long non-Coding RNAs as therapeutic targets in cancer. Cancers, 12(12). doi: 10.3390/cancers12123695

Malone, L. M., Warring, S. L., Jackson, S. A., Warnecke, C., Gardner, P. P., Gumy, L. F., & Fineran, P. C. (2020). A jumbo phage that forms a nucleus-like structure evades CRISPR-Cas DNA targeting but is vulnerable to type III RNA-based immunity. Nature Microbiology, 5, 48-55. doi: 10.1038/s41564-019-0612-5

Marsman, J., Gimenez, G., Day, R. C., Horsfield, J. A., & Jones, G. T. (2020). A non-coding genetic variant associated with abdominal aortic aneurysm alters ERG gene regulation. Human Molecular Genetics, 29(4), 554-565. doi: 10.1093/hmg/ddz256

Mathiesen, S. N., Lock, J. L., Schoderboeck, L., Abraham, W. C., & Hughes, S. M. (2020). CNS transduction benefits of AAV-PHP.eB over AAV9 are dependent on administration route and mouse strain. Molecular Therapy: Methods & Clinical Development, 19, 447-458. doi: 10.1016/j.omtm.2020.10.011

McGregor, R., Whitcombe, A. L., Sheen, C. R., Dickson, J. M., Day, C. L., Carlton, L. H., … Bennett, J., Baker, M. G., … Moreland, N. J. (2020). Collaborative networks enable the rapid establishment of serological assays for SARS-CoV-2 during nationwide lockdown in New Zealand. PeerJ, 8, e9863. doi: 10.7717/peerj.9863

Mehta, S., Algie, M., Al-Jabry, T., McKinney, C., Kannan, S., Verma, C. S., … Parker, K., Henderson, L., Gould, M. L., Bhatia, P., Harfoot, R., … Kleffmann, T., … Woolley, A. G., … Braithwaite, A. (2020). Critical role for cold shock protein YB-1 in cytokinesis. Cancers, 12, 2473. doi: 10.3390/cancers12092473

Mehta, S., McKinney, C., Algie, M., Verma, C. S., Kannan, S., Harfoot, R., … Gould, M. L., Parker, K., … Cunliffe, H. E., … Kleffmann, T., Braithwaite, A. W., & Woolley, A. G. (2020). Dephosphorylation of YB-1 is required for nuclear localisation during G₂ phase of the cell cycle. Cancers, 12(2), 315. doi: 10.3390/cancers12020315

Metcalfe, L. K., Krishnan, M., Turner, N., Yaghootkar, H., Merry, T. L., Dewes, O., … Stamp, L. K., Merriman, T. R., … Murphy, R. (2020). The Māori and Pacific specific CREBRF variant and adult height. International Journal of Obesity, 44, 748-752. doi: 10.1038/s41366-019-0437-6

Mettrick, K., Hassan, K., Lamont, I., & Reid, D. (2020). The Iron-chelator, N,N'-bis (2-hydroxybenzyl) ethylenediamine-N,N'-diacetic acid is an effective colistin adjunct against clinical strains of biofilm-dwelling Pseudomonas aeruginosa. Antibiotics, 9(4), 144. doi: 10.3390/antibiotics9040144

Middleton, A. J., Zhu, J., & Day, C. L. (2020). The RING domain of RING Finger 12 efficiently builds degradative ubiquitin chains. Journal of Molecular Biology, 432, 3790-3801. doi: 10.1016/j.jmb.2020.05.001

Morgan, B. M., Brown, A. N., Deo, N., Harrop, T. W. R., Taiaroa, G., Mace, P. D., Wilbanks, S. M., Merriman, T. R., Williams, M. J. A., & McCormick, S. P. A. (2020). Nonsynonymous SNPs in LPA homologous to plasminogen deficiency mutants represent novel null apo(a) alleles. Journal of Lipid Research, 61, 432-444. doi: 10.1194/jlr.M094540

Mungure, T. E., Farouk, M. M., Birch, E. J., Carne, A., Staincliffe, M., Stewart, I., & Bekhit, A. E.-D. A. (2020). Effect of PEF treatment on meat quality attributes, ultrastructure and metabolite profiles of wet and dry aged venison Longissimus dorsi muscle. Innovative Food Science & Emerging Technologies, 65, 102457. doi: 10.1016/j.ifset.2020.102457

Murphy, E. L., Singh, K. V., Avila, B., Kleffmann, T., Gregory, S. T., Murray, B. E., Krause, K. L., … Jogl, G. (2020). Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis. Scientific Reports, 10, 16301. doi: 10.1038/s41598-020-73199-6

Nakayama, A., Nakatochi, M., Kawamura, Y., Yamamoto, K., Nakaoka, H., Shimizu, S., … Major, T. J., Merriman, T. R., … on behalf of Japan Gout Genomics Consortium (Japan Gout). (2020). Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients. Annals of the Rheumatic Diseases, 79, 657-665. doi: 10.1136/annrheumdis-2019-216644

Narang, R. K., Gamble, G., Phipps-Green, A. J., Topless, R., Cadzow, M., Stamp, L. K., Merriman, T. R., & Dalbeth, N. (2020). Do serum urate-associated genetic variants influence gout risk in people on diuretics? Analysis of the UK Biobank. Journal of Rheumatology, 47, 1704-1711. doi: 10.3899/jrheum.191005

Nilsen, A. R., Wang, X. Y., Soop, K., Cooper, J. A., Ridley, G. S., Wallace, M., Summerfield, T. C., Brown, C. M., & Orlovich, D. A. (2020). Purple haze: Cryptic purple sequestrate Cortinarius in New Zealand. Mycologia, 112(3), 588-605. doi: 10.1080/00275514.2020.1730120

Nishtala, P. S., & Chyou, T.-y. (2020). Identifying drug combinations associated with acute kidney injury using association rules method. Pharmacoepidemiology & Drug Safety, 29, 467-473. doi: 10.1002/pds.4960

Nishtala, P. S., Gill, S., & Chyou, T.-y. (2020). Analysis of the US FDA adverse event reporting system to identify adverse cardiac events associated with hydroxychloroquine in older adults. Pharmacoepidemiology & Drug Safety, 29, 1689-1695. doi: 10.1002/pds.5155

Oliphant, A., Hawkes, M. K. N., Cridge, A. G., & Dearden, P. K. (2020). Transcriptomic characterisation of neuropeptides and their putative cognate G protein-coupled receptors during late embryo and stage-1 juvenile development of the Aotearoa-New Zealand crayfish, Paranephrops zealandicus. General & Comparative Endocrinology, 292, 113443. doi: 10.1016/j.ygcen.2020.113443

Petersen, G. E. L., Fennessy, P. F., Van Stijn, T. C., Clarke, S. M., Dodds, K. G., & Dearden, P. K. (2020). Genotyping-by-sequencing of pooled drone DNA for the management of living honeybee (Apis mellifera) queens in commercial beekeeping operations in New Zealand. Apidologie, 51, 545-556. doi: 10.1007/s13592-020-00741-w

Pinilla-Redondo, R., Shehreen, S., Marino, N. D., Fagerlund, R. D., Brown, C. M., Sørensen, S. J., Fineran, P. C., & Bondy-Denomy, J. (2020). Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements. Nature Communications, 11(1), 5652. doi: 10.1038/s41467-020-19415-3

Pinkney, H. R., Wright, B. M., & Diermeier, S. D. (2020). The lncRNA toolkit: Databases and in silico tools for lncRNA analysis. Non-coding RNA, 6, 49. doi: 10.3390/ncrna6040049

Rollie, C., Chevallereau, A., Watson, B. N. J., Chyou, T.-y., Fradet, O., McLeod, I., Fineran, P. C., Brown, C. M., … Westra, E. R. (2020). Targeting of temperate phages drives loss of type I CRISPR-Cas systems. Nature, 578, 149-153. doi: 10.1038/s41586-020-1936-2

Ryder, K., Ali, M. A., Billakanti, J., & Carne, A. (2020). Evaluation of dairy co-product containing composite solutions for the formation of bioplastic films. Journal of Polymers & the Environment, 28, 725-736. doi: 10.1007/s10924-019-01635-4

Salavati, M., Caulton, A., Clark, R., Gazova, I., Smith, T. P. L., Worley, K. C., … on behalf of The Ovine FAANG Project Consortium. (2020). Global analysis of transcription start sites in the new ovine reference genome (Oar rambouillet v1.0). Frontiers in Genetics, 11, 580580. doi: 10.3389/fgene.2020.580580

Sheridan, K. J., Duncan, E. J., Eaton-Rye, J. J., & Summerfield, T. C. (2020). The diversity and distribution of D1 proteins in cyanobacteria. Photosynthesis Research, 145(2), 111-128. doi: 10.1007/s11120-020-00762-7

Shrestha, R., Petley, E. V., Farrand, K. J., Jamieson, S. A., Jiao, W., Teesdale-Spittle, P. H., … Mace, P. D., … Rendle, P. M. (2020). The synthesis and anti-tumour properties of poly ethoxy ethyl glycinamide (PEE-G) scaffolds with multiple PD-1 peptides attached. ChemMedChem, 15, 1128-1138. doi: 10.1002/cmdc.202000221

Söderholm, A., Newton, M. S., Patrick, W. M., & Selmer, M. (2020). Structure and kinetics of indole-3-glycerol phosphate synthase from Pseudomonas aeruginosa: Decarboxylation is not essential for indole formation. Journal of Biological Chemistry, 295(47), 15948-15956. doi: 10.1074/jbc.RA120.014936

Stamp, L. K., Chapman, P. T., Barclay, M., Horne, A., Frampton, C., Merriman, T. R., Wright, D. F. B., … Dalbeth, N. (2020). Relationships between allopurinol dose, oxypurinol concentration and urate-lowering response: In search of a minimum effective oxypurinol concentration. Clinical & Translational Science, 13, 110-115. doi: 10.1111/cts.12686

Sweetman, E., Kleffmann, T., Edgar, C., de Lange, M., Vallings, R., & Tate, W. (2020). A SWATH-MS analysis of Myalgic Encephalomyelitis/Chronic Fatigue Syndrome peripheral blood mononuclear cell proteomes reveals mitochondrial dysfunction. Journal of Translational Medicine, 18, 365. doi: 10.1186/s12967-020-02533-3

Tai, V., Narang, R. K., Gamble, G., Cadzow, M., Stamp, L. K., Merriman, T. R., & Dalbeth, N. (2020). Do serum urate-associated genetic variants differentially contribute to gout risk according to body mass index? Analysis of the UK Biobank. Arthritis & Rheumatology, 72(7), 1184-1191. doi: 10.1002/art.41219

Tan, L. P., Tan, G. W., Sivanesan, V. M., Goh, S. L., Ng, X. J., Lim, C. S., … the Malaysian Nasopharyngeal Carcinoma Study Group. (2020). Systematic comparison of plasma EBV DNA, anti-EBV antibodies and miRNA levels for early detection and prognosis of Nasopharyngeal Carcinoma. International Journal of Cancer, 146, 2336-2347. doi: 10.1002/ijc.32656

Taylor, S., & Taylor, S. (2020). When ‘#xmasangels’ tweet: A reception study of craftivism as Christian witness. Ecclesial Practices, 7, 143-162. doi: 10.1163/22144471-BJA10016

Trevelyan, S. J., Brewster, J. L., Burgess, A. E., Crowther, J. M., Cadell, A. L., Parker, B. L., … Mace, P. D. (2020). Structure-based mechanism of preferential complex formation by apoptosis signal-regulating kinases. Science Signaling, 13(622), eaay6318. doi: 10.1126/scisignal.aay6318

Vinnakota, C., Govindpani, K., Tate, W. P., Peppercorn, K., Anekal, P. V., Waldvogel, H. J., … Kwakowsky, A. (2020). An α5 GABAA receptor inverse agonist, α5IA, attenuates amyloid beta-induced neuronal death in mouse hippocampal cultures. International Journal of Molecular Sciences, 21(9), 3284. doi: 10.3390/ijms21093284

Wang, Z., Zhao, Y., Phipps-Green, A., Liu-Bryan, R., Ceponis, A., Boyle, D. L., … Merriman, T. R., … Terkeltaub, R. (2020). Differential DNA methylation of networked signaling, transcriptional, innate and adaptive immunity, and osteoclastogenesis genes and pathways in gout. Arthritis & Rheumatology, 72(5), 802-814. doi: 10.1002/art.41173

Wilson, P. W., Marshall, C., Bayer-Giraldi, M., & Mateo, M. A. (2020). Evidence for transition of metastable ice to hexagonal ice in bulk solutions at relatively high temperatures. International Journal of Geosciences, 11(8), 493-500. doi: 10.4236/ijg.2020.118025

Winbo, A., Earle, N., Marcondes, L., Crawford, J., Prosser, D. O., Love, D. R., Merriman, T. R., Cadzow, M., … Skinner, J. R. (2020). Genetic testing in Polynesian long QT syndrome probands reveals a lower diagnostic yield and an increased prevalence of rare variants. Heart Rhythm, 17(8), 1304-1311. doi: 10.1016/j.hrthm.2020.03.015

Wrigley, R., Phipps-Green, A. J., Topless, R. K., Major, T. J., Cadzow, M., Riches, P., … Stamp, L. K., … Merriman, T. R. (2020). Pleiotropic effect of the ABCG2 gene in gout: Involvement in serum urate levels and progression from hyperuricemia to gout. Arthritis Research & Therapy, 22, 45. doi: 10.1186/s13075-020-2136-z

Yeung, J. H. Y., Calvo-Flores Guzmán, B., Palpagama, H. T., Ethiraj, J., Zhai, Y., Tate, W. P., Peppercorn, K., … Kwakowsky, A. (2020). Amyloid-beta_1-42 induced glutamatergic receptor and transporter expression changes in the mouse hippocampus. Journal of Neurochemistry, 155, 62-80. doi: 10.1111/jnc.15099

Yeung, J. H. Y., Palpagama, T. H., Tate, W. P., Peppercorn, K., Waldvogel, H. J., Faull, R. L. M., & Kwakowsky, A. (2020). The acute effects of amyloid-Beta_1–42 on glutamatergic receptor and transporter expression in the mouse hippocampus. Frontiers in Neuroscience, 13, 1427. doi: 10.3389/fnins.2019.01427

Yu, X.-W., Pandey, K., Katzman, A. C., & Alberini, C. M. (2020). A role for CIM6P/IGF2 receptor in memory consolidation and enhancement. eLIFE, 9, e54781. doi: 10.7554/eLife.54781

Zaidi, F., Narang, R. K., Phipps-Green, A., Gamble, G. G., Tausche, A.-K., So, A., … Stamp, L. K., Merriman, T. R., & Dalbeth, N. (2020). Systematic genetic analysis of early-onset gout: ABCG2 is the only associated locus. Rheumatology, 59, 2544-2549. doi: 10.1093/rheumatology/kez685

Zamanpoor, M., Ghaedi, H., & Omrani, M. D. (2020). Association of SPOCK1 gene locus with rheumatoid arthritis in Caucasians. Meta Gene, 26, 100806. doi: 10.1016/j.mgene.2020.100806

Zamanpoor, M., Ghaedi, H., & Omrani, M. D. (2020). The genetic basis for the inverse relationship between rheumatoid arthritis and schizophrenia. Molecular Genetics & Genomic Medicine, 8, e1483. doi: 10.1002/mgg3.1483

Zou, D., Day, R., Cocadiz, J. A., Parackal, S., Mitchell, W., Black, M. A., … Jackson, C., & Guilford, P. (2020). Circulating tumor DNA is a sensitive marker for routine monitoring of treatment response in advanced colorectal cancer. Carcinogenesis, 41(11), 1507-1517. doi: 10.1093/carcin/bgaa102

Aloi, S., Davies, C. G., Karplus, P. A., Wilbanks, S. M., & Jameson, G. N. L. (2019). Substrate specificity in thiol dioxygenases. Biochemistry, 58, 2398-2407. doi: 10.1021/acs.biochem.9b00079

Basak, I., Bhatlekar, S., Manne, B. K., Stoller, M., Hugo, S., Kong, X., … Bray, P. F. (2019). miR-15a-5p regulates expression of multiple proteins in the megakaryocyte GPVI signaling pathway. Journal of Thrombosis & Haemostasis, 17(3), 511-524. doi: 10.1111/jth.14382

Beetham, H., Chen, A., Telford, B. J., Single, A., Jarman, K. E., Lackovic, K., … Guilford, P. (2019). A high-throughput screen to identify novel synthetic lethal compounds for the treatment of E-cadherin-deficient cells. Scientific Reports, 9, 12511. doi: 10.1038/s41598-019-48929-0

Bhatlekar, S., Basak, I., Edelstein, L. C., Campbell, R. A., Lindsey, C. R., Italiano, Jr, J. E., … Bray, P. F. (2019). Anti-apoptotic BCL2L2 increases megakaryocyte proplatelet formation in cultures of human cord blood. Haematologica, 104(10), 2075-2083. doi: 10.3324/haematol.2018.204685

Bouckaert, R., Vaughan, T. G., Barido-Sottani, J., Duchêne, S., Fourment, M., Gavryushkina, A., … Drummond, A. J. (2019). BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology, 15(4), e1006650. doi: 10.1371/journal.pcbi.1006650

Bougen-Zhukov, N., Nouri, Y., Godwin, T., Taylor, M., Hakkaart, C., Single, A., Brew, T., Permina, E., Chen, A., Black, M. A., & Guilford, P. (2019). Allosteric AKT inhibitors target synthetic lethal vulnerabilities in E-cadherin-deficient cells. Cancers, 11(9), 1359. doi: 10.3390/cancers11091359

Brown, A., Thatje, S., Martinez, A., Pond, D., & Oliphant, A. (2019). The effect of high hydrostatic pressure acclimation on acute temperature tolerance and phospholipid fatty acid composition in the shallow-water shrimp Palaemon varians. Journal of Experimental Marine Biology & Ecology, 514-515, 103-109. doi: 10.1016/j.jembe.2019.03.011

Burrow, K., Young, W., Carne, A., McConnell, M., Hammer, N., Scholze, M., & Bekhit, A. E.-D. (2019). Consumption of sheep milk compared to cow milk can affect trabecular bone ultrastructure in a rat model. Food & Function, 10, 163-171. doi: 10.1039/c8fo01598h

Cain, J. T., Likhite, S., White, K. A., Timm, D. J., Davis, S. S., Johnson, T. B., … Hughes, S. M., … Weimer, J. M. (2019). Gene therapy corrects brain and behavioral pathologies in CLN6-Batten disease. Molecular Therapy, 27(10), 1836-1847. doi: 10.1016/j.ymthe.2019.06.015

Casas Garcia, G. P., Perugini, M. A., Lamont, I. L., & Maher, M. J. (2019). The purification of the σ^FpvI/FpvR₂₀ and σ^PvdS/FpvR₂₀ protein complexes is facilitated at room temperature. Protein Expression & Purification, 160, 11-18. doi: 10.1016/j.pep.2019.03.005

Chagné, D., Ryan, J., Saeed, M., Van Stijn, T., Brauning, R., Clarke, S., … Wilcox, P., … Lewis, D. (2019). A high density linkage map and quantitative trait loci for tree growth for New Zealand mānuka (Leptospermum scoparium). New Zealand Journal of Crop & Horticultural Science, 47(4), 261-272. doi: 10.1080/01140671.2018.1540437

Chyou, T., & Brown, C. M. (2019). Prediction and diversity of tracrRNAs from type II CRISPR-Cas systems. RNA Biology, 16(4), 423-434. doi: 10.1080/15476286.2018.1498281

Clark, D. W., Okada, Y., Moore, K. H. S., Mason, D., Pirastu, N., Gandin, I., … Bixley, M. J., … Merriman, T. R., … Wilson, J. F. (2019). Associations of autozygosity with a broad range of human phenotypes. Nature Communications, 10, 4957. doi: 10.1038/s41467-019-12283-6

Crake, R. L. I., Phillips, E., Kleffmann, T., & Currie, M. J. (2019). Co-culture with human breast adipocytes differentially regulates protein abundance in breast cancer cells. Cancer Geonomics & Proteomics, 16(5), 319-332. doi: 10.21873/cgp.20137