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ZOOL316 Biological Data Analysis and Computing

Uses real biological examples and computers, and deals with types of data and their acquisition; graphical and exploratory analysis; estimation and hypothesis testing; experimental design; computer-intensive methods and simulation.

This paper covers experimental design and data analysis techniques widely used in the biological sciences, taught using the free software R.

Paper title Biological Data Analysis and Computing
Paper code ZOOL316
Subject Zoology
EFTS 0.1500
Points 18 points
Teaching period First Semester
Domestic Tuition Fees (NZD) $1,018.05
International Tuition Fees (NZD) $4,320.00

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Prerequisite
(STAT 110 or STAT 115) and 54 200-level points from Science Schedule C
Restriction
WILM 404
Schedule C
Science
Learning Outcomes
Students will gain an understanding of key issues related to experimental design and data analysis. They will also learn to use the free software R to conduct a range of analyses (from basic to complex).

Specific aims of the paper include:
  • Helping you design field or laboratory experiments
  • Helping you gather, present and interpret biological data
  • Enabling you to make recommendations and decisions about biological systems
  • Giving you a foundation for understanding, critically evaluating and using statistical data
  • Building up your knowledge slowly and thoroughly
  • Hopefully, helping reduce a possible fear or dislike of stats!
Contact
zoology@otago.ac.nz
Teaching staff
Dr Christoph Matthaei
Dr Travis Ingram
Associate Professor Michael Paulin
Paper Structure
24 lectures (30-45 minutes), with 24 corresponding tutorials (60-75 minutes) involving hands-on programming and data analysis using R, which are taught in computer labs (assisted by student demonstrators)
Teaching Arrangements
The first course module (3 lecture/tutorial sessions) provides an in-depth training in experimental design.

The second course module (9 sessions in total) covers fundamental statistical issues (4 sessions), simple analyses (2 sessions) and complex analyses (3 sessions).

Modules 3 and 4 (12 sessions in total) cover mainly intermediate and advanced techniques complementing Module 2.
Textbooks
Quinn, G.P. and Keough, M.J. (2002) Experimental Design and Data Analysis for Biologists. Cambridge University Press, Cambridge, UK.

Whitlock, M.C. and Schluter, D. (2009) The Analysis of Biological Data. Roberts & Co. Publishers, Colorado, USA.
Graduate Attributes Emphasised
Interdisciplinary perspective, Lifelong learning, Scholarship, Critical thinking, Information literacy, Research.
View more information about Otago's graduate attributes.

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Timetable

First Semester

Location
Dunedin
Teaching method
This paper is taught On Campus
Learning management system
Blackboard

Computer Lab

Stream Days Times Weeks
Attend one stream from
X1 Thursday 12:00-12:50 9-15, 17-22
X2 Thursday 12:00-12:50 9-15, 17-22
AND one stream from
Z1 Monday 11:00-11:50 9-15, 17-22
Z2 Monday 11:00-11:50 9-15, 17-22

Lecture

Stream Days Times Weeks
Attend
L1 Monday 10:00-10:50 9-15, 17-22
Thursday 11:00-11:50 9-15, 17-22

Uses real biological examples and computers, and deals with types of data and their acquisition; graphical and exploratory analysis; estimation and hypothesis testing; experimental design; computer-intensive methods and simulation.

This paper covers experimental design and data analysis techniques widely used in the biological sciences, taught using the free software R.

Paper title Biological Data Analysis and Computing
Paper code ZOOL316
Subject Zoology
EFTS 0.1500
Points 18 points
Teaching period First Semester
Domestic Tuition Fees (NZD) $1,038.45
International Tuition Fees (NZD) $4,492.80

^ Top of page

Prerequisite
(STAT 110 or STAT 115) and 54 200-level points from Science Schedule C
Restriction
WILM 404
Schedule C
Science
Contact
zoology@otago.ac.nz
Teaching staff
Dr Christoph Matthaei
Dr Stephanie Godfrey
Associate Professor Michael Paulin
Paper Structure
24 lectures (30-45 minutes), with 24 corresponding tutorials (60-75 minutes) involving hands-on programming and data analysis using R, which are taught in computer labs (assisted by student demonstrators).
Teaching Arrangements
The first course module (3 lecture/tutorial sessions) provides an in-depth training in experimental design.

The second course module (9 sessions in total) covers fundamental statistical issues (4 sessions), simple analyses (2 sessions) and complex analyses (3 sessions).

Modules 3 and 4 (12 sessions in total) cover mainly intermediate and advanced techniques complementing Module 2.
Textbooks
Quinn, G.P. and Keough, M.J. (2002) Experimental Design and Data Analysis for Biologists. Cambridge University Press, Cambridge, UK.

Whitlock, M.C. and Schluter, D. (2009) The Analysis of Biological Data. Roberts & Co. Publishers, Colorado, USA.

Kruschke, J.K. (2011) Doing Bayesian Data Analysis: A tutorial with R and BUGS. Elsevier.
Graduate Attributes Emphasised
Interdisciplinary perspective, Lifelong learning, Scholarship, Critical thinking, Information literacy, Research.
View more information about Otago's graduate attributes.
Learning Outcomes
Students will gain an understanding of key issues related to experimental design and data analysis. They will also learn to use the free software R to conduct a range of analyses (from basic to complex).

Specific aims of the paper include:
  • Helping you design field or laboratory experiments
  • Helping you gather, present and interpret biological data
  • Enabling you to make recommendations and decisions about biological systems
  • Giving you a foundation for understanding, critically evaluating and using statistical data
  • Building up your knowledge slowly and thoroughly
  • Hopefully, helping reduce a possible fear or dislike of stats!

^ Top of page

Timetable

First Semester

Location
Dunedin
Teaching method
This paper is taught On Campus
Learning management system
Blackboard

Computer Lab

Stream Days Times Weeks
Attend one stream from
X1 Thursday 12:00-12:50 9-13, 15-22
X2 Thursday 12:00-12:50 9-13, 15-22
AND one stream from
Z1 Monday 11:00-11:50 9-13, 15-22
Z2 Monday 11:00-11:50 9-13, 15-22

Lecture

Stream Days Times Weeks
Attend
L1 Monday 10:00-10:50 9-13, 15-22
Thursday 11:00-11:50 9-13, 15-22