Red X iconGreen tick iconYellow tick icon

Alex_226

Owheo Building, Room 244
Tel +64 3 479 8494
Email alex@biods.org

I joined the Department in 2018 as Rutherford Discovery Fellow. Prior to that I completed postdoctoral fellowships at ETH Zurich and the University of Auckland. I graduated from Novosibirsk University in 2009 with a PhD in Mathematics.

Currently, I am leading the Biological Data Science lab here at Otago. We develop mathematical and computational methods for genomic data analysis, in close collaboration with our colleagues at the Division of Health Sciences.

Further information about the lab, including publications, projects, and open positions, can be found on the bioDS lab @Otago website

Publications

Gould, A. L., Zhang, V., Lamberti, L., Jones, E. W., Obadia, B., Korasidis, N., Gavryushkin, A., … Ludington, W. B. (2018). Microbiome interactions shape host fitness. PNAS, 115(51), E11951-E11960. doi: 10.1073/pnas.1809349115

Lienkaemper, C., Lamberti, L., Drain, J., Beerenwinkel, N., & Gavryushkin, A. (2018). The geometry of partial fitness orders and an efficient method for detecting genetic interactions. Journal of Mathematical Biology, 77, 951-970. doi: 10.1007/s00285-018-1237-7

Gavryushkin, A., Whidden, C., & Matsen IV, F. A. (2018). The combinatorics of discrete time-trees: Theory and open problems. Journal of Mathematical Biology, 76(5), 1101-1121. doi: 10.1007/s00285-017-1167-9

Robb, T., Blenkiron, C., Tsai, P., Parker, K., Drummond, A., Black, M., Gavryushkin, A., … Print, C. (2018). Investigating tumour evolution in a single patient with disseminated cancer. Annals of Oncology, 29(Suppl. 9), (pp. ix156). doi: 10.1093/annonc/mdy425.018

Crona, K., Gavryushkin, A., Greene, D., & Beerenwinkel, N. (2017). Inferring genetic interactions from comparative fitness data. eLIFE, 6, e28629. doi: 10.7554/eLife.28629

Back to top