rbind.capthist {secr} | R Documentation

## Combine capthist Objects

### Description

Form a single `capthist` object from two or more compatible `capthist` objects.

### Usage

    rbind.capthist(..., renumber = TRUE, pool = NULL)
    MS.capthist(...)

### Arguments

`...` | one or more simple `capthist` objects (i.e., single-session)
`renumber` | assign new composite individual ID: sourceobject.oldID
`pool` | list of indices

### Details

In its simplest usage, the source objects in ... each provide detection histories from a single session, and the result is a single-session object. For this to work the objects must be compatible. `capthist` objects are compatible if they use the same detectors (traps) and have consistent `covariates and other attributes.`

If the ... argument includes at least one multi-session capthist object then the elements will be formed into a single multi-session capthist object. If ... is a single multi-session object then the components of `pool` are used to define combinations of old sessions (e.g. pool = list(1:3, 4:5) forms two new sessions from 5 old ones).

Although `rbind.capthist` looks like an S3 method, it isn't. The full function name must be used.

`MS.capthist` treats each source object as the data for a separate session. Compatibility is not required.

### Value

An object of class `capthist` with number of rows equal to the sum of the rows in the input objects.

### Author(s)

Murray Efford murray.efford@otago.ac.nz

### See Also

`capthist`, `subset.capthist`

### Examples

    ## simulate 2-part mixture
    temptrap <- make.grid(nx = 8, ny = 8)
    temp1 <- sim.capthist(temptrap,
        detectpar = list(g0 = 0.1, sigma = 40))
    temp2 <- sim.capthist(temptrap,
        detectpar = list(g0 = 0.2, sigma = 20))
    temp3 <- rbind.capthist(temp1, temp2)

    ## compare mixture to sum of components
    ## note 'traps visited' is not additive for 'multi' detector
    ## nor is 'traps set'
    (summary(temp1)$counts +  summary(temp2)$counts) -
        summary(temp3)$counts

[Package secr version 1.2.11 Index]