possum {secr} | R Documentation

## Brushtail Possum Trapping Dataset

### Description

Data from a trapping study of brushtail possums at Waitarere, North Island, New Zealand.

### Usage

    data(possum)

### Details

Brushtail possums (Trichosurus vulpecula) are an unwanted invasive species in New Zealand. Although most abundant in forests, where they occasionally exceed densities of 15 / ha, possums live wherever there are palatable food plants and shelter.

Efford et al. (2005) reported a live-trapping study of possums in Pinus radiata plantation on coastal sand dunes. The 294-ha site at Waitarere in the North Island of New Zealand was a peninsula, bounded on one side by the sea and on two other sides by the Manawatu river. Cage traps were set in groups of 36 at 20-m spacing around the perimeter of five squares, each 180 m on a side. The squares ('hollow grids') were centred at random points within the 294-ha area. Animals were tagged and released daily for 5 days in April 2002. Subsequently, leg-hold trapping was conducted on a trapping web centred on each square (data not reported here), and strenuous efforts were made to remove all possums by cyanide poisoning and further leghold trapping across the entire area. This yielded a density estimate of 2.26 possums / ha.

Traps could catch at most one animal per day. The live-trapped animals comprised 46 adult females, 33 adult males, 10 immature females and 11 immature males; sex and/or age were not recorded for 4 individuals (M. Coleman unpubl. data). One female possum was twice captured at two sites on one day, having entered a second trap after being released; one record in each pair was selected arbitrarily and discarded.

The data are provided as a single-session `capthist` object 'possumCH'. 'possummask' is a matching mask object - see Examples. Two fitted models ('possum.model.1' & 'possum.model.1b') are provided for illustration.

### Source

Landcare Research, New Zealand.

### References

Borchers, D.L. and Efford, M.G. (2008) Spatially explicit maximum likelihood methods for capture-recapture studies. Biometrics 64, 377–385.

Efford, M. G., Dawson, D. K. and Robbins C. S. (2004) DENSITY: software for analysing capture-recapture data from passive detector arrays. Animal Biodiversity and Conservation 27, 217–228.

Efford, M. G., Warburton, B., Coleman, M. C. and Barker, R. J. (2005) A field test of two methods for density estimation. Wildlife Society Bulletin 33, 731–738.

### See Also

`capthist`

### Examples

    ## Not run:

    setwd('d:\density communication\webtest\foxton\')
    possumtraps <- read.traps(file = 'foxtraps.txt', detector = 'single')
    temp <- read.captures('foxton.txt', colClasses=c('character',
        'character', 'numeric', 'character'))
    ## drop within-day duplicates of animal 5861
    temp <- temp[-c(184,186),]

    possumCH <- make.capthist(temp, possumtraps)
    possummask <- make.mask(possumtraps, buffer = 300, type='pdot', pdotmin = 0.001,
        detectpar = list(g0=0.2, sigma=60), spacing = 10)

    ## fit constant-density model
    possum.model.1 <- secr.fit(possumCH, mask = possummask)
    ## fit learned trap response model
    possum.model.1b <- secr.fit(possumCH, mask = possummask, model = list(g0~b))

    ## End(Not run)

    require (graphics)
    data(possum)
    plot(possummask)
    plot(possumCH, tracks = TRUE, add = TRUE)
    plot(traps(possumCH), add = TRUE)
    summary(possumCH)

    ## compare & average pre-fitted models
    AIC(possum.model.1, possum.model.1b)
    model.average(possum.model.1, possum.model.1b)

[Package secr version 1.3.0 Index]