Entry: AIC.secr
Aliases: AIC.secr
Keywords: models
Description: Compare SECR Models
URL: ../../../library/secr/html/AIC.secr.html

Entry: D.designdata
Aliases: D.designdata
Keywords: manip
Description: Construct Density Design Data
URL: ../../../library/secr/html/D.designdata.html

Entry: FAQ
Aliases: FAQ secr FAQ
Keywords: manip
Description: Frequently Asked Questions, And Others
URL: ../../../library/secr/html/FAQ.html

Entry: LR.test
Aliases: LR.test
Keywords: models
Description: Likelihood Ratio Test for SECR Models
URL: ../../../library/secr/html/LRtest.html

Entry: autoini
Aliases: autoini
Keywords: models
Description: Initial Parameter Values for SECR
URL: ../../../library/secr/html/autoini.html

Entry: captdata
Aliases: captdata
Keywords: datasets
Description: Detection Dataset
URL: ../../../library/secr/html/captdata.html

Entry: capthist
Aliases: capthist
Keywords: models
Description: Spatial Capture History Object
URL: ../../../library/secr/html/capthist.html

Entry: capthist.parts
Aliases: animalID occasion trap xy signal xy<- signal<-
Keywords: models
Description: Dissect Spatial Capture History Object
URL: ../../../library/secr/html/capthistfn.html

Entry: coef.secr
Aliases: coef.secr
Keywords: models
Description: Coefficients of secr Object
URL: ../../../library/secr/html/coef.secr.html

Entry: confint.secr
Aliases: confint.secr
Keywords: models
Description: Profile Likelihood Confidence Intervals
URL: ../../../library/secr/html/confint.secr.html

Entry: covariates
Aliases: covariates covariates<-
Keywords: manip
Description: Covariates Attribute
URL: ../../../library/secr/html/covariates.html

Entry: derived
Aliases: derived esa
Keywords: models
Description: Derived Parameters of Fitted SECR Model
URL: ../../../library/secr/html/derivedMS.html

Entry: detectfn
Aliases: detection functions
Keywords: models
Description: Detection Functions
URL: ../../../library/secr/html/detectfn.html

Entry: detector
Aliases: detector detector<-
Keywords: models
Description: Detector Type
URL: ../../../library/secr/html/detector.html

Entry: deviance
Aliases: deviance df.residual deviance.secr df.residual.secr
Keywords: models
Description: Deviance of fitted secr model and residual degrees of freedom
URL: ../../../library/secr/html/deviance.secr.html

Entry: distancetotrap
Aliases: nearesttrap distancetotrap
Keywords: manip
Description: Distance To Nearest Detector
URL: ../../../library/secr/html/distancetotrap.html

Entry: flip
Aliases: flip
Keywords: manip
Description: Flip Points
URL: ../../../library/secr/html/flip.html

Entry: flip.traps
Aliases: flip.traps
Keywords: manip
Description: Flip Detector Array
URL: ../../../library/secr/html/flip.traps.html

Entry: homerange
Aliases: dbar RPSV
Keywords: models
Description: Home Range Statistics
URL: ../../../library/secr/html/homerange.html

Entry: ip.secr
Aliases: ip.secr pfn
Keywords: models
Description: Spatially Explicit Capture-Recapture by Inverse Prediction
URL: ../../../library/secr/html/ip.secr.html

Entry: logit
Aliases: logit invlogit
Keywords: manip
Description: Logit Transformation
URL: ../../../library/secr/html/logit.html

Entry: make.capthist
Aliases: make.capthist
Keywords: models
Description: Construct capthist Object
URL: ../../../library/secr/html/make.capthist.html

Entry: make.mask
Aliases: make.mask
Keywords: datagen
Description: Build Habitat Mask
URL: ../../../library/secr/html/make.mask.html

Entry: make.traps
Aliases: make.grid make.circle make.poly make.transect
Keywords: datagen
Description: Build Detector Array
URL: ../../../library/secr/html/make.traps.html

Entry: mask
Aliases: mask
Keywords: models
Description: Mask Object
URL: ../../../library/secr/html/mask.html

Entry: model.average
Aliases: model.average collate
Keywords: models
Description: Model averaging for SECR Models
URL: ../../../library/secr/html/model.average.html

Entry: ovenbird
Aliases: ovenbird ovenCH ovenbird.model.1 ovenbird.model.1b
Keywords: datasets
Description: Ovenbird Mist-netting Dataset
URL: ../../../library/secr/html/ovenbird.html

Entry: pdot
Aliases: pdot
Keywords: manip
Description: Net Detection Probability
URL: ../../../library/secr/html/pdot.html

Entry: plot.capthist
Aliases: plot.capthist
Keywords: hplot
Description: Plot Detection Histories
URL: ../../../library/secr/html/plot.capthist.html

Entry: plot.mask
Aliases: plot.mask
Keywords: hplot
Description: Plot Habitat Mask
URL: ../../../library/secr/html/plot.mask.html

Entry: plot.popn
Aliases: plot.popn
Keywords: hplot
Description: Plot popn Object
URL: ../../../library/secr/html/plot.popn.html

Entry: plot.secr
Aliases: plot.secr detectfnplot
Keywords: hplot
Description: Plot Detection Functions
URL: ../../../library/secr/html/plot.secr.html

Entry: plot.traps
Aliases: plot.traps
Keywords: hplot
Description: Plot traps Object
URL: ../../../library/secr/html/plot.traps.html

Entry: popn
Aliases: popn
Keywords: models
Description: Population Object
URL: ../../../library/secr/html/popn.html

Entry: possum
Aliases: possum possumCH possummask possum.model.1 possum.model.1b
Keywords: datasets
Description: Brushtail Possum Trapping Dataset
URL: ../../../library/secr/html/possum.html

Entry: predict.secr
Aliases: predict.secr
Keywords: models
Description: SECR Model Predictions
URL: ../../../library/secr/html/predict.secr.html

Entry: print.capthist
Aliases: print.capthist
Keywords: print
Description: Print Detections
URL: ../../../library/secr/html/print.capthist.html

Entry: print.mask
Aliases: print.mask
Keywords: print
Description: Print Habitat Mask
URL: ../../../library/secr/html/print.mask.html

Entry: print.secr
Aliases: print.secr
Keywords: print
Description: Print secr Object
URL: ../../../library/secr/html/print.secr.html

Entry: print.traps
Aliases: print.traps
Keywords: print
Description: Print Detectors
URL: ../../../library/secr/html/print.traps.html

Entry: rawdata
Aliases: rawdata captXY trapXY
Keywords: datasets
Description: Demonstration Data
URL: ../../../library/secr/html/rawdata.html

Entry: rbind.capthist
Aliases: rbind.capthist MS.capthist
Keywords: manip
Description: Combine capthist Objects
URL: ../../../library/secr/html/rbind.capthist.html

Entry: rbind.popn
Aliases: rbind.popn
Keywords: manip
Description: Combine popn Objects
URL: ../../../library/secr/html/rbind.popn.html

Entry: rbind.traps
Aliases: rbind.traps
Keywords: manip
Description: Combine traps Objects
URL: ../../../library/secr/html/rbind.traps.html

Entry: read.captures
Aliases: read.captures
Keywords: IO
Description: Read Capture Data From File
URL: ../../../library/secr/html/read.captures.html

Entry: read.mask
Aliases: read.mask
Keywords: IO
Description: Read Habitat Mask From File
URL: ../../../library/secr/html/read.mask.html

Entry: read.traps
Aliases: read.traps
Keywords: manip
Description: Read Detector Data From File
URL: ../../../library/secr/html/read.traps.html

Entry: reduce
Aliases: reduce
Keywords: manip
Description: Combine Columns
URL: ../../../library/secr/html/reduce.html

Entry: reduce.capthist
Aliases: reduce.capthist
Keywords: manip
Description: Combine Occasions
URL: ../../../library/secr/html/reduce.capthist.html

Entry: rotate
Aliases: rotate
Keywords: manip
Description: Rotate Points
URL: ../../../library/secr/html/rotate.html

Entry: rotate.traps
Aliases: rotate.traps
Keywords: manip
Description: Rotate Detectors
URL: ../../../library/secr/html/rotate.traps.html

Entry: score.test
Aliases: score.test score.table
Keywords: models
Description: Score Test for SECR Models
URL: ../../../library/secr/html/score.test.html

Entry: secr-package
Aliases: secr-package secr
Keywords: package
Description: Spatially Explicit Capture-Recapture Models
URL: ../../../library/secr/html/secr-package.html

Entry: secr.design.MS
Aliases: secr.design.MS
Keywords: manip
Description: Construct Detection Model Design Matrices and Lookups
URL: ../../../library/secr/html/secr.design.MS.html

Entry: secr.fit
Aliases: secr.fit
Keywords: models
Description: Spatially Explicit Capture-Recapture
URL: ../../../library/secr/html/secr.fit.html

Entry: secr.make.newdata
Aliases: secr.make.newdata
Keywords: models
Description: Create Default Design Data
URL: ../../../library/secr/html/secr.make.newdata.html

Entry: secr.model.density
Aliases: secr.model.density secr density models
Keywords: models
Description: Density Models
URL: ../../../library/secr/html/secr.model.density.html

Entry: secr.model.detection
Aliases: secr.model.detection secr detection models
Keywords: models
Description: Models for Detection Parameters
URL: ../../../library/secr/html/secr.model.detection.html

Entry: secr.model
Aliases: secr.model secr models
Keywords: models
Description: Spatially Explicit Capture-Recapture Models
URL: ../../../library/secr/html/secr.models.html

Entry: secrdemo
Aliases: secrdemo secrdemo.0 secrdemo.b secrdemo.CL
Keywords: datasets
Description: SECR Models Fitted to Demonstration Data
URL: ../../../library/secr/html/secrdemo.html

Entry: session
Aliases: session session<-
Keywords: models
Description: Session Vector
URL: ../../../library/secr/html/session.html

Entry: shift
Aliases: shift
Keywords: manip
Description: Shift Points
URL: ../../../library/secr/html/shift.html

Entry: shift.traps
Aliases: shift.traps
Keywords: manip
Description: Shift Detectors
URL: ../../../library/secr/html/shift.traps.html

Entry: sim.capthist
Aliases: sim.capthist sim.resight
Keywords: datagen
Description: Simulate Detection Histories
URL: ../../../library/secr/html/sim.capthist.html

Entry: sim.popn
Aliases: sim.popn
Keywords: datagen
Description: Simulate 2-D Population
URL: ../../../library/secr/html/sim.popn.html

Entry: sim.secr
Aliases: simulate.secr sim.secr simulate
Keywords: models
Description: Simulate From Fitted secr Model
URL: ../../../library/secr/html/sim.secr.html

Entry: subset.capthist
Aliases: subset.capthist split.capthist
Keywords: manip
Description: Subset or Split capthist Object
URL: ../../../library/secr/html/subset.capthist.html

Entry: subset.mask
Aliases: subset.mask rbind.mask
Keywords: models
Description: Subset Mask Object
URL: ../../../library/secr/html/subset.mask.html

Entry: subset.traps
Aliases: subset.traps split.traps
Keywords: manip
Description: Subset traps Object
URL: ../../../library/secr/html/subset.traps.html

Entry: summary.capthist
Aliases: summary.capthist print.summary.capthist counts
Keywords: models
Description: Summarise Detections
URL: ../../../library/secr/html/summary.capthist.html

Entry: summary.mask
Aliases: summary.mask print.summary.mask
Keywords: models
Description: Summarise Habitat Mask
URL: ../../../library/secr/html/summary.mask.html

Entry: summary.traps
Aliases: summary.traps print.summary.traps
Keywords: models
Description: Summarise Detector Array
URL: ../../../library/secr/html/summary.traps.html

Entry: traps
Aliases: traps object traps traps<-
Keywords: models
Description: Detector Array
URL: ../../../library/secr/html/traps.html

Entry: traps.info
Aliases: searcharea searcharea<- polyID polyID<- transectID transectID<- transectlength
Keywords: models
Description: Detector Attributes
URL: ../../../library/secr/html/trapsfn.html

Entry: trim
Aliases: trim trim.default trim.secr
Keywords: manip
Description: Drop Unwanted List Components
URL: ../../../library/secr/html/trim.html

Entry: usage
Aliases: usage usage<-
Keywords: manip
Description: Detector Usage
URL: ../../../library/secr/html/usage.html

Entry: vcov.secr
Aliases: vcov.secr
Keywords: models
Description: Variance - Covariance Matrix of SECR Parameters
URL: ../../../library/secr/html/vcov.secr.html

Entry: verify
Aliases: verify verify.default verify.traps verify.capthist verify.mask
Keywords: manip
Description: Check SECR Data
URL: ../../../library/secr/html/verify.html

Entry: write.capthist
Aliases: write.capthist write.traps
Keywords: IO
Description: Write Data to Text File
URL: ../../../library/secr/html/write.html
