| homerange {secr} | R Documentation |
Two ad hoc measures of home range size may be calculated in secr from capture–recapture data:
dbar is the mean distance between consecutive capture locations,
pooled over individuals (e.g. Efford 2004).
RPSV (for 'Root Pooled Spatial Variance') is a measure of the 2-D
dispersion of the locations at which individual animals are detected,
pooled over individuals.
dbar(capthist) RPSV(capthist)
capthist |
object of class capthist |
dbar is defined as
see pdf manual
RPSV is defined as
see pdf manual
dbar and RPSV have a specific role as proxies for
home-range size in inverse-prediction estimation of density (Efford
2004; see ip.secr).
dbar is used in autoini to obtain plausible starting
values for maximum likelihood estimation.
Scalar distance in metres, or a list of such values if capthist
is a multi-session list.
Both measures are affected by the arrangement of detectors. dbar
is also affected quite strongly by serial correlation in the sampled
locations. Using dbar with 'proximity' detectors raises a problem
of interpretation, as the original sequence of multiple detections
within an occasion is unknown. RPSV is a value analogous to the standard
deviation of locations about the home range centre.
Inclusion of these measures in the secr package does not mean they are recommended for general use! It is usually better to use a spatial parameter from a fitted model (e.g., sigma of the half-normal detection function). Even then, be careful that sigma is not 'contaminated' with behavioural effects (e.g. attraction of animal to detector) or 'detection at a distance'.
Murray Efford murray.efford@otago.ac.nz
Efford, M. G. (2004) Density estimation in live-trapping studies. Oikos 106, 598–610.
data(captdata) dbar(captdata) RPSV(captdata)