Sollitto, M., Kenny, N. J., Greco, S., Tucci, C. F., Calcino, A. D., & Gerdol, M. (2022). Detecting structural variants and associated gene presence-absence variation phenomena in the genomes of marine organisms. In C. Verde & D. Giordano (Eds.), Marine genomics: Methods and protocols: Methods in molecular biology (Vol. 2498). (pp. 53-76). New York, NY: Springer. doi: 10.1007/978-1-0716-2313-8_4

Chapter in Book - Research

Truchado-García, M., Perry, K. J., Cavodeassi, F., Kenny, N. J., Henry, J. Q., & Grande, C. (2023). A small change with a twist ending: A single residue in EGF-CFC drives bilaterian asymmetry. Molecular Biology & Evolution, 40(2), msac270. doi: 10.1093/molbev/msac270

Journal - Research Article

Leiva, C., Riesgo, A., Combosch, D., Arias, M. B., Giribet, G., Downey, R., Kenny, N. J., & Taboada, S. (2022). Guiding marine protected area network design with comparative phylogeography and population genomics: An exemplary case from the Southern Ocean. Diversity & Distributions. Advance online publication. doi: 10.1111/ddi.13590

Journal - Research Article

Calcino, A. D., Kenny, N. J., & Gerdol, M. (2021). Single individual structural variant detection uncovers widespread hemizygosity in molluscs. Philosophical Transactions of the Royal Society B, 376, 20200153. doi: 10.1098/rstb.2020.0153

Journal - Research Article

Kenny, N. J., & Itskovich, V. B. (2021). Phylogenomic inference of the interrelationships of Lake Baikal sponges. Systematics & Biodiversity, 19(2), 209-217. doi: 10.1080/14772000.2020.1827077

Journal - Research Article

Pechmann, M., Kenny, N. J., Pott, L., Heger, P., Chen, Y.-T., Buchta, T., … Roth, S. (2021). Striking parallels between dorsoventral patterning in Drosophila and Gryllus reveal a complex evolutionary history behind a model gene regulatory network. eLIFE, 10, e68287. doi: 10.7554/eLife.68287

Journal - Research Article

Plese, B., Kenny, N. J., Rossi, M. E., Cárdenas, P., Schuster, A., Taboada, S., … Riesgo, A. (2021). Mitochondrial evolution in the Demospongiae (Porifera): Phylogeny, divergence time, and genome biology. Molecular Phylogenetics & Evolution, 155, 107011. doi: 10.1016/j.ympev.2020.107011

Journal - Research Article

Riesgo, A., Taboada, S., Kenny, N. J., Santodomingo, N., Moles, J., Leiva, C., … Maldonado, M. (2021). Recycling resources: Silica of diatom frustules as a source for spicule building in Antarctic siliceous demosponges. Zoological Journal of the Linnean Society, 192(2), 259-276. doi: 10.1093/zoolinnean/zlaa058

Journal - Research Article

Britstein, M., Cerrano, C., Burgsdorf, I., Zoccarato, L., Kenny, N. J., Riesgo, A., … Steindler, L. (2020). Sponge microbiome stability during environmental acquisition of highly specific photosymbionts. Environmental Microbiology, 22(8), 3593-3607. doi: 10.1111/1462-2920.15165

Journal - Research Article

Kenny, N. J., Francis, W. R., Rivera-Vicéns, R. E., Juravel, K., de Mendoza, A., Díez-Vives, C., … Leys, S. P. (2020). Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri. Nature Communications, 11, 3676. doi: 10.1038/s41467-020-17397-w

Journal - Research Article

Álvarez-Campos, P., Kenny, N. J., Verdes, A., Fernández, R., Novo, M., Giribet, G., & Riesgo, A. (2019). Delegating sex: Differential gene expression in stolonizing syllids uncovers the hormonal control of reproduction. Genome Biology & Evolution, 11(1), 295-318. doi: 10.1093/gbe/evy265

Journal - Research Article

González-Aravena, M., Kenny, N. J., Osorio, M., Font, A., Riesgo, A., & Cárdenas, C. A. (2019). Warm temperatures, cool sponges: The effect of increased temperatures on the Antarctic sponge Isodycta sp. PeerJ, 7, e8088. doi: 10.7717/peerj.8088

Journal - Research Article

Kenny, N. J., Noreña, C., Damborenea, C., & Grande, C. (2019). Probing recalcitrant problems in polyclad evolution and systematics with novel mitochondrial genome resources. Genomics, 111(3), 343-355. doi: 10.1016/j.ygeno.2018.02.009

Journal - Research Article

Kenny, N. J., Plese, B., Riesgo, A., & Itskovich, V. B. (2019). Symbiosis, selection, and novelty: Freshwater adaptation in the unique sponges of Lake Baikal. Molecular Biology & Evolution, 36(11), 2462-2480. doi: 10.1093/molbev/msz151

Journal - Research Article

Leiva, C., Taboada, S., Kenny, N. J., Combosch, D., Giribet, G., Jombart, T., & Riesgo, A. (2019). Population substructure and signals of divergent adaptive selection despite admixture in the sponge Dendrilla antarctica from shallow waters surrounding the Antarctic Peninsula. Molecular Ecology, 28(13), 3151-3170. doi: 10.1111/mec.15135

Journal - Research Article

Sumner-Rooney, L., Kenny, N. J., Ahmed, F., & Williams, S. T. (2019). The utility of micro-computed tomography for the non-destructive study of eye microstructure in snails. Scientific Reports, 9, 15411. doi: 10.1038/s41598-019-51909-z

Journal - Research Article

Kenny, N. J., de Goeij, J. M., de Bakker, D. M., Whalen, C. G., Berezikov, E., & Riesgo, A. (2018). Towards the identification of ancestrally shared regenerative mechanisms across the metazoa: A transcriptomic case study in the demosponge Halisarca caerulea. Marine Genomics, 37, 135-147. doi: 10.1016/j.margen.2017.11.001

Journal - Research Article

Riesgo, A., Cavalcanti, F. F., Kenny, N. J., Ríos, P., Cristobo, J., & Lanna, E. (2018). Integrative systematics of clathrinid sponges: Morphological, reproductive and phylogenetic characterisation of a new species of Leucetta from Antarctica (Porifera, Calcarea, Calcinea) with notes on the occurrence of flagellated sperm. Invertebrate Systematics, 32(4), 827-841. doi: 10.1071/is17033

Journal - Research Article

Schumann, I., Kenny, N., Hui, J., Hering, L., & Mayer, G. (2018). Halloween genes in panarthropods and the evolution of the early moulting pathway in Ecdysozoa. Royal Society Open Science, 5(9), 180888. doi: 10.1098/rsos.180888

Journal - Research Article

Taboada, S., Kenny, N. J., Riesgo, A., Wiklund, H., Paterson, G. L. J., Dahlgren, T. G., & Glover, A. G. (2018). Mitochondrial genome and polymorphic microsatellite markers from the abyssal sponge Plenaster craigi Lim & Wiklund, 2017: Tools for understanding the impact of deep-sea mining. Marine Biodiversity, 48, 621-630. doi: 10.1007/s12526-017-0786-0

Journal - Research Article

Pechmann, M., Benton, M. A., Kenny, N. J., Posnien, N., & Roth, S. (2017). A novel role for Ets4 in axis specification and cell migration in the spider Parasteatoda tepidariorum. eLIFE, 6, e27590. doi: 10.7554/eLife.27590

Journal - Research Article

Benton, M. A., Kenny, N. J., Conrads, K. H., Roth, S., & Lynch, J. A. (2016). Deep, staged transcriptomic resources for the novel coleopteran models Atrachya menetriesi and Callosobruchus maculatus. PLoS ONE, 11(12), e0167431. doi: 10.1371/journal.pone.0167431

Journal - Research Article

Kenny, N. J., Chan, K. W., Nong, W., Qu, Z., Maeso, I., Yip, H. Y., … Hui, J. H. L. (2016). Ancestral whole-genome duplication in the marine chelicerate horseshoe crabs. Heredity, 116, 190-199. doi: 10.1038/hdy.2015.89

Journal - Research Article

Kenny, N. J., Truchado-García, M., & Grande, C. (2016). Deep, multi-stage transcriptome of the schistosomiasis vector Biomphalaria glabrata provides platform for understanding molluscan disease-related pathways. BMC Infectious Diseases, 16, 618. doi: 10.1186/s12879-016-1944-x

Journal - Research Article

Kenny, N. J., Namigai, E. K. O., Marlétaz, F., Hui, J. H. L., & Shimeld, S. M. (2015). Draft genome assemblies and predicted microRNA complements of the intertidal lophotrochozoans Patella vulgata (Mollusca, Patellogastropoda) and Spirobranchus (Pomatoceros) lamarcki (Annelida, Serpulida). Marine Genomics, 24, 139-146. doi: 10.1016/j.margen.2015.07.004

Journal - Research Article

Kenny, N. J., Shen, X., Chan, T. T. H., Wong, N. W. Y., Chan, T. F., Chu, K. H., … Hui, J. H. L. (2015). Genome of the rusty millipede, Trigoniulus corallinus, illuminates diplopod, myriapod, and arthropod evolution. Genome Biology & Evolution, 7(5), 1280-1295. doi: 10.1093/gbe/evv070

Journal - Research Article

Kenny, N. J., Sin, Y. W., Hayward, A., Paps, J., Chu, K. H., & Hui, J. H. L. (2015). The phylogenetic utility and functional constraint of microRNA flanking sequences. Proceedings of the Royal Society B, 282(1803), 20142983. doi: 10.1098/rspb.2014.2983

Journal - Research Article

Qu, Z., Kenny, N. J., Lam, H. M., Chan, T. F., Chu, K. H., Bendena, W. G., … Hui, J. H. L. (2015). How did arthropod sesquiterpenoids and ecdysteroids arise? Comparison of hormonal pathway genes in noninsect arthropod genomes. Genome Biology & Evolution, 7(7), 1951-1959. doi: 10.1093/gbe/evv120

Journal - Research Article

Sin, Y. W., Kenny, N. J., Qu, Z., Chan, K. W., Chan, K. W. S., Cheong, S. P. S., … Hui, J. H. L. (2015). Identification of putative ecdysteroid and juvenile hormone pathway genes in the shrimp Neocaridina denticulata. General & Comparative Endocrinology, 214, 167-176. doi: 10.1016/j.ygcen.2014.07.018

Journal - Research Article

Chipman, A. D., Ferrier, D. E. K., Brena, C., Qu, J., Hughes, D. S. T., Schröder, R., … Dearden, P. K., … Duncan, E. J., … Kenny, N. J., … Richards, S. (2014). The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima. PLoS Biology, 12(11), e1002005. doi: 10.1371/journal.pbio.1002005

Journal - Research Article

Grande, C., Martín-Durán, J. M., Kenny, N. J., Truchado-García, M., & Hejnol, A. (2014). Evolution, divergence and loss of the nodal signalling pathway: New data and a synthesis across the Bilateria. International Journal of Developmental Biology, 58, 521-532. doi: 10.1387/ijdb.140133cg

Journal - Research Article

Kenny, N. J., Namigai, E. K. O., Dearden, P. K., Hui, J. H. L., Grande, C., & Shimeld, S. M. (2014). The lophotrochozoan TGF-β signalling cassette: Diversification and conservation in a key signalling pathway. International Journal of Developmental Biology, 58, 533-549. doi: 10.1387/ijdb.140080nk

Journal - Research Article

Kenny, N. J., Sin, Y. W., Shen, X., Zhe, Q., Wang, W., Chan, T. F., … Hui, J. H. L. (2014). Genomic sequence and experimental tractability of a new decapod shrimp model, Neocaridina denticulata. Marine Drugs, 12(3), 1419-1437. doi: 10.3390/md12031419

Journal - Research Article

Wilson, M. J., Kenny, N. J., & Dearden, P. K. (2014). Components of the dorsal-ventral pathway also contribute to anterior-posterior patterning in honeybee embryos (Apis mellifera). EvoDevo, 5, 11. doi: 10.1186/2041-9139-5-11

Journal - Research Article

Kenny, N. J., & Dearden, P. K. (2013). NMDA receptor expression and C terminus structure in the rotifer Brachionus plicatilis and long-term potentiation across the Metazoa. Invertebrate Neuroscience, 13, 125-134. doi: 10.1007/s10158-013-0154-0

Journal - Research Article

Kenny, N. J., & Shimeld, S. M. (2012). Additive multiple k-mer transcriptome of the keelworm Pomatoceros lamarckii (Annelida; Serpulidae) reveals annelid trochophore transcription factor cassette. Development Genes & Evolution, 222, 325-339. doi: 10.1007/s00427-012-0416-6

Journal - Research Article

García-Castro, H., Kenny, N. J., Iglesias, M., Álvarez-Campos, P., Mason, V., Elek, A., … Solana, J. (2021). ACME dissociation: A versatile cell fixation-dissociation method for single-cell transcriptomics. Genome Biology, 22, 89. doi: 10.1186/s13059-021-02302-5

Journal - Research Other

Kenny, N. J., McCarthy, S. A., Dudchenko, O., James, K., Betteridge, E., Corton, C., … Williams, S. T. (2020). The gene-rich genome of the scallop Pecten maximus [Data Note]. GigaScience, 9(5), giaa037. doi: 10.1093/gigascience/giaa037

Journal - Research Other

Plese, B., Rossi, M. E., Kenny, N. J., Taboada, S., Koutsouveli, V., & Riesgo, A. (2019). Trimitomics: An efficient pipeline for mitochondrial assembly from transcriptomic reads in nonmodel species. Molecular Ecology Resources, 19(5), 1230-1239. doi: 10.1111/1755-0998.13033

Journal - Research Other

Namigai, E. K. O., Kenny, N. J., & Shimeld, S. M. (2014). Right across the tree of life: The evolution of left-right asymmetry in the Bilateria. Genesis, 52(6), 458-470. doi: 10.1002/dvg.22748

Journal - Research Other

Kenny, N. J., Quah, S., Holland, P. W. H., Tobe, S. S., & Hui, J. H. L. (2013). How are comparative genomics and the study of microRNAs changing our views on arthropod endocrinology and adaptations to the environment? General & Comparative Endocrinology, 188, 16-22. doi: 10.1016/j.ygcen.2013.02.013

Journal - Research Other