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The first Vice-Chancellor in the current sense of the University's full-time chief executive and its academic and administrative head was appointed in 1948. There had been Vice-Chancellors previously, but they were deputies to the Chancellor on the University Council (since 1946 the title for that role has been Pro-Chancellor).

1948 - 1953
Sir Robert Stevenson Aitken MD(NZ) DPhil(Oxon) HonLLD(Dal) (Melb) (Panj) (McG) (Nfld) (Penn) (Aberd) (Otago) HonDSc(Syd) HonDCL(Oxon) FRCP FRCPEd FRACP
1953 - 1963
Frederick George Soper CBE PhD DSc(Wales) HonDSc(Otago) FRSNZ CChem FRSC HonFNZIC
1964 - 1966
Arthur Beacham OBE BA(Wales) MA(Liv) PhD(Belf) HonLLD(Otago)
1967 - 1973
Robert Martin Williams CBE MA(NZ) BA PhD(Cantab) HonLLD(Otago)
1973 - 1993
Sir Robin Orlando Hamilton Irvine MD(NZ) Dr h c(Edin) HonLLD(Otago) FRCP FRACP FRSA FNZIM
1994 - 2004
Dr Graeme Fogelberg CNZM BCom(NZ) MCom(Well) MBA PhD (W Ont) HonLLD(Otago) FInstD
2004 - 2011
Sir David Christopher Graham Skegg, KNZM OBE BMedSc MB ChB HonLLD(Otago) DPhil(Oxf) FFPHM FAFPHM FRSNZ
2011 - 2021
Professor Harlene Hayne, ONZM BA HonDSc(Colorado College) MS PhD(Rutgers) HonLLD (Otago) FRSNZ
2022 - 2023
Professor David Roger Murdoch MB ChB MD(Otago) MSc(Lond) DTM&H(Liv) FRACP FRCPA FFSc(RCPA)
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