Professor Neil Gemmell

Gemmell, N. J., Todd, E. V., Goikoetxea, A., Ortega-Recalde, O., & Hore, T. A. (2019). Natural sex change in fish. In Current topics in developmental biology. (pp. 71-117). Elsevier. doi: 10.1016/bs.ctdb.2018.12.014

Chapter in Book - Research

Thomas, J. T., Liu, H., Todd, E. V., & Gemmell, N. J. (2018). Sex change in fish. In P. Swanson & M. K. Skinner (Eds.), Encyclopedia of reproduction (Vol.6): Comparative reproduction. (2nd ed.) (pp. 192-197). Oxford, UK: Elsevier. doi: 10.1016/B978-0-12-809633-8.20555-4

Chapter in Book - Research

Sawaya, S. M., Bagshaw, A. T., Buschiazzo, E., & Gemmell, N. J. (2012). Promoter microsatellites as modulators of human gene expression. In A. J. Hannan (Ed.), Tandem repeat polymorphisms: Genetic plasticity, neural diversity and disease. (pp. 41-54). Austin, TX: Landes Bioscience.

Chapter in Book - Research

Vargas Jentzsch, I. M., Bagshaw, A., Buschiazzo, E., Merkel, A., & Gemmell, N. J. (2008). Evolution of microsatellite DNA. In Encyclopedia of Life Sciences. Chichester, UK: John Wiley & Sons. doi: 10.1002/9780470015902.a0020847

Chapter in Book - Research

Adams, C. I. M., Jeunen, G.-J., Cross, H., Taylor, H. R., Bagnaro, A., Currie, K., Hepburn, C., Gemmell, N. J., … Knapp, M. (2023). Environmental DNA metabarcoding describes biodiversity across marine gradients. ICES Journal of Marine Science, fsad017. Advance online publication. doi: 10.1093/icesjms/fsad017

Journal - Research Article

Bagshaw, A. T. M., & Gemmell, N. J. (2023). Bisulfite probing reveals DNA structural intricacies. Nucleic Acids Research. Advance online publication. doi: 10.1093/nar/gkad115

Journal - Research Article

Bentley, B. P., Carrasco-Valenzuela, T., Ramos, E. K. S., Pawar, H., Arantes, L. S., Alexander, A., … Gemmell, N. J., … Komoroske, L. M. (2023). Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. PNAS, 120(7), e2201076120. doi: 10.1073/pnas.2201076120

Journal - Research Article

Bond, D. M., Ortega-Recalde, O., Laird, M. K., Hayakawa, T., Richardson, K. S., Reese, F. C. B., Kyle, B., McIsaac-Williams, B. E., Robertson, B. C., van Heezik, Y., Adams, A. L., … Gemmell, N. J., Alexander, A., & Hore, T. A. (2023). The admixed brushtail possum genome reveals invasion history in New Zealand and novel imprinted genes. Nature Communications, 14, 6364. doi: 10.1038/s41467-023-41784-8

Journal - Research Article

Doherty, J.-F., Bhattarai, U. R., Ferreira, S., Poulin, R., Gemmell, N. J., & Dowle, E. J. (2023). The proof is in the poo: Non-invasive method to detect endoparasitic infection. Molecular Ecology Resources, 23(5), 990-1001. doi: 10.1111/1755-0998.13763

Journal - Research Article

Durán-Vinet, B., Araya-Castro, K., Zaiko, A., Pochon, X., Wood, S. A., Stanton, J.-A. L., Jeunen, G.-J., … Kardailsky, A., … Gemmell, N. J. (2023). CRISPR-Cas-based biomonitoring for marine environments: Toward CRISPR RNA design optimization via deep learning. CRISPR Journal. Advance online publication. doi: 10.1089/crispr.2023.0019

Journal - Research Article

Guhlin, J., Le Lec, M. F., Wold, J., Koot, E., Winter, D., Biggs, P. J., … Urban, L., Foster, Y., … Robertson, F. E., Robertson, B. C., Gemmell, N. J., … Dearden, P. K. (2023). Species-wide genomics of kākāpō provides tools to accelerate recovery. Nature Ecology & Evolution. Advance online publication. doi: 10.1038/s41559-023-02165-y

Journal - Research Article

Jeunen, G.-J., Cane, J. S., Ferreira, S., Strano, F., von Ammon, U., Cross, H., Day, R., … Ellis, K., Urban, L., Pearson, N., Olmedo-Rojas, P., Kardailsky, A., Gemmell, N. J., & Lamare, M. (2023). Assessing the utility of marine filter feeders for environmental DNA (eDNA) biodiversity monitoring. Molecular Ecology Resources. Advance online publication. doi: 10.1111/1755-0998.13754

Journal - Research Article

Jeunen, G.-J., Dowle, E., Edgecombe, J., von Ammon, U., Gemmell, N. J., & Cross, H. (2023). CRABS: A software program to generate curated reference databases for metabarcoding sequencing data. Molecular Ecology Resources, 23, 725-738. doi: 10.1111/1755-0998.13741

Journal - Research Article

Jeunen, G.-J., Lamare, M., Devine, J., Mariani, S., Mills, S., Treece, J., Ferreira, S., & Gemmell, N. J. (2023). Characterizing Antarctic fish assemblages using eDNA obtained from marine sponge bycatch specimens. Reviews in Fish Biology & Fisheries. Advance online publication. doi: 10.1007/s11160-023-09805-3

Journal - Research Article

Kamstra, K., van der Burg, C., Quertermous, H. M., Muncaster, S., Todd, E. V., Jasoni, C. L., … Gemmell, N. J. (2023). Neuroanatomy of a sex changing fish: The New Zealand spotty wrasse (Notolabrus celidotus) brain atlas. New Zealand Journal of Zoology. Advance online publication. doi: 10.1080/03014223.2023.2216939

Journal - Research Article

Miller, A. K., Brosnahan, C. L., Pande, A., Baker, C. F., Geoghegan, J. L., Kitson, J., Gemmell, N. J., & Dowle, E. J. (2023). Formalin-fixed paraffin-embedded (FFPE) samples help to investigate transcriptomic responses in wildlife disease. Molecular Ecology Resources. Advance online publication. doi: 10.1111/1755-0998.13805

Journal - Research Article

Muncaster, S., Goikoetxea, A., Lokman, P. M., De Farias e Moraes, C. E., Damsteegt, E. L., Edgecombe, J., Gemmell, N. J., & Todd, E. V. (2023). Genes involved in sex differentiation, epigenetic reprogramming, and cell fate regulate sex change in a wrasse. Reviews in Fish Biology & Fisheries. Advance online publication. doi: 10.1007/s11160-022-09755-2

Journal - Research Article

Munk, P., Brinch, B., Møller, F. D., Petersen, T. N., Hendriksen, R. S., Seyfarth, A. M., … Global Sewage Surveillance Consortium, including Jeunen, G.-J., Gemmell, N., Chambers, S. T., … Aarestrup, F. M. (2023). Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance. Nature Communications, 14(1), 7251. doi: 10.1038/s41467-022-34312-7

Journal - Research Article

Olmedo-Rojas, P., Jeunen, G.-J., Lamare, M., Turnbull, J., Terauds, A., Gemmell, N., & Fraser, C. I. (2023). Soil environmental DNA metabarcoding in low-biomass regions requires protocol optimization: A case study in Antarctica. Antarctic Science, 35(1), 15-30. doi: 10.1017/S0954102022000384

Journal - Research Article

Pearman, W. S., Duffy, G. A., Liu, X. P., Gemmell, N. J., Morales, S. E., & Fraser, C. I. (2023). Macroalgal microbiome biogeography is shaped by environmental drivers rather than geographic distance. Annals of Botany. Advance online publication. doi: 10.1093/aob/mcad151

Journal - Research Article

Timoshevskaya, N., Eşkut, K. I., Timoshevskiy, V. A., Robb, S. M. C., Holt, C., Hess, J. E., … Miller, A. K., … Gemmell, N. J., … Smith, J. J. (2023). An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes. Cell Reports, 42, 112263. doi: 10.1016/j.celrep.2023.112263

Journal - Research Article

West, A. G., Digby, A., Kākāpō Recovery Team, Kākāpō Aspergillosis Research Consortium, including Dearden, P. K., Gemmell, N. J., Guhlin, J., Le Lec, M., Quinones Mateu, M., and Taylor, M. D. (2023). The mycobiota of faeces from the critically endangered kākāpō and associated nest litter. New Zealand Journal of Zoology. Advance online publication. doi: 10.1080/03014223.2023.2170428

Journal - Research Article

Bhattarai, U. R., Katuwal, M., Poulin, R., Gemmell, N. J., & Dowle, E. (2022). Genome assembly and annotation of the European earwig Forficula auricularia (subspecies B). Genes Genomes Genetics, 12(10), jkac199. doi: 10.1093/g3journal/jkac199

Journal - Research Article

Goikoetxea, A., Todd, E. V., Muncaster, S., Lokman, P. M., Thomas, J. T., Robertson, H. A., … Gemmell, N. J. (2022). Effects of cortisol on female-to-male sex change in a wrasse. PLoS ONE, 17(9), e0273779. doi: 10.1371/journal.pone.0273779

Journal - Research Article

Holtmann, B., Lara, C. E., Santos, E. S. A., Gillum, J. E., Gemmell, N. J., & Nakagawa, S. (2022). The association between personalities, alternative breeding strategies, and reproductive success in dunnocks. Journal of Evolutionary Biology, 35, 539-551. doi: 10.1111/jeb.13906

Journal - Research Article

Jeunen, G.-J., Lipinskaya, T., Gajduchenko, H., Golovenchik, V., Moroz, M., Rizevsky, V., … Gemmell, N. J. (2022). Environmental DNA (eDNA) metabarcoding surveys show evidence of non-indigenous freshwater species invasion to new parts of Eastern Europe. Metabarcoding & Metagenomics, 6, 171-186. doi: 10.3897/mbmg.6.e68575

Journal - Research Article

Jeunen, G.-J., von Ammon, U., Cross, H., Ferreira, S., Lamare, M., Day, R., Treece, J., … Gemmell, N. J., & Stanton, J.-A. L. (2022). Moving environmental DNA (eDNA) technologies from benchtop to the field using passive sampling and PDQeX extraction. Environmental DNA, 4, 1420-1433. doi: 10.1002/edn3.356

Journal - Research Article

Miller, A. K., Timoshevskaya, N., Smith, J. J., Gillum, J., Sharif, S., Clarke, S., … Gemmell, N. J., & Alexander, A. (2022). Population genomics of New Zealand pouched lamprey (kanakana; piharau; Geotria australis). Journal of Heredity, 113, 380-397. doi: 10.1093/jhered/esac014

Journal - Research Article

Morrissey, K. A., Sampson, J. R., Rivera, M., Bu, L., Hansen, V. L., Gemmell, N. J., … Miller, R. D. (2022). Comparison of reptilian genomes reveals deletions associated with the natural loss of γδ T cells in squamates. Journal of Immunology, 208(8), 1960-1967. doi: 10.4049/jimmunol.2101158

Journal - Research Article

Ragsdale, A., Ortega-Recalde, O., Dutoit, L., Besson, A. A., Chia, J. H. Z., King, T., Nakagawa, S., Hickey, A., Gemmell, N. J., Hore, T., & Johnson, S. L. (2022). Paternal hypoxia exposure primes offspring for increased hypoxia resistance. BMC Biology, 20, 185. doi: 10.1186/s12915-022-01389-x

Journal - Research Article

Bhattarai, U. R., Doherty, J.-F., Dowle, E., & Gemmell, N. J. (2021). The adaptiveness of host behavioural manipulation assessed using Tinbergen's four questions. Trends in Parasitology, 37(7), 597-609. doi: 10.1016/j.pt.2021.01.006

Journal - Research Article

Bowers, H. A., Pochon, X., von Ammon, U., Gemmell, N., Stanton, J.-A. L., Jeunen, G. J., … Zaiko, A. (2021). Towards the optimization of eDNA/eRNA sampling technologies for marine biosecurity surveillance. Water, 13(8), 1113. doi: 10.3390/w13081113

Journal - Research Article

Dussex, N., van der Valk, T., Morales, H. E., Wheat, C. W., Díez-del-Molino, D., von Seth, J., Foster, Y., … Le Lec, M. F., Dearden, P. K., … Knapp, M., Gemmell, N. J., Robertson, F., … Robertson, B. C., & Dalén, L. (2021). Population genomics of the critically endangered kākāpō. Cell Genomics, 1, 100002. doi: 10.1016/j.xgen.2021.100002

Journal - Research Article

Goikoetxea, A., Muncaster, S., Todd, E. V., Lokman, P. M., Robertson, H. A., De Farias e Moraes, C. E., Damsteegt, E. L., & Gemmell, N. J. (2021). A new experimental model for the investigation of sequential hermaphroditism. Scientific Reports, 11(1), 22881. doi: 10.1038/s41598-021-02063-y

Journal - Research Article

Macey, J. R., Pabinger, S., Barbieri, C. G., Buring, E. S., Gonzalez, V. L., Mulcahy, D. G., … Urban, L., … Prost, S., … Gemmell, N. J. (2021). Evidence of two deeply divergent co-existing mitochondrial genomes in the Tuatara reveals an extremely complex genomic organization. Communications Biology, 4, 116. doi: 10.1038/s42003-020-01639-0

Journal - Research Article

Martini, D., Dussex, N., Robertson, B. C., Gemmell, N. J., & Knapp, M. (2021). Evolution of the world's only alpine parrot: Genomic adaptation or phenotypic plasticity, behaviour and ecology? Molecular Ecology, 30, 6370-6386. doi: 10.1111/mec.15978

Journal - Research Article

Miller, A. K., Baker, C., Kitson, J. C., Yick, J. L., Manquel, P. E. I., Alexander, A., & Gemmell, N. J. (2021). The Southern Hemisphere lampreys (Geotriidae and Mordaciidae). Reviews in Fish Biology & Fisheries, 31, 201-232. doi: 10.1007/s11160-021-09639-x

Journal - Research Article

Miller, A. K., Mifsud, J. C. O., Costa, V. A., Grimwood, R. M., Kitson, J., Baker, C., … Gemmell, N. J., & Geoghegan, J. L. (2021). Slippery when wet: Cross-species transmission of divergent coronaviruses in bony and jawless fish and the evolutionary history of the Coronaviridae. Virus Evolution, 7(2), veab050. doi: 10.1093/ve/veab050

Journal - Research Article

Noble, A. J., Pearson, J. F., Boden, J. M., Horwood, L. J., Gemmell, N. J., Kennedy, M. A., & Osborne, A. J. (2021). A validation of Illumina EPIC array system with bisulfite-based amplicon sequencing. PeerJ, 9, e10762. doi: 10.7717/peerj.10762

Journal - Research Article

Dussex, N., Kutschera, V. E., Wiberg, R. A. W., Parker, D. J., Hunt, G. R., Gray, R. D., … Gemmell, N. J. (2020). A genome-wide investigation of adaptive signatures in protein-coding genes related to tool behaviour in New Caledonian and Hawaiian crows. Molecular Ecology. doi: 10.1111/mec.15775

Journal - Research Article

Feng, S., Stiller, J., Deng, Y., Armstrong, J., Fang, Q., Reeve, A. H., … Robertson, B. C., … Jamieson, I. G., … Rutherford, K. M., Gemmell, N. J., Dussex, N., … Zhang, G. (2020). Dense sampling of bird diversity increases power of comparative genomics. Nature, 587, 252-257. doi: 10.1038/s41586-020-2873-9

Journal - Research Article

Ferreira, S., Ashby, R., Jeunen, G.-J., Rutherford, K., Collins, C., Todd, E. V., & Gemmell, N. J. (2020). DNA from mollusc shell: A valuable and underutilised substrate for genetic analyses. PeerJ, 8, e9420. doi: 10.7717/peerj.9420

Journal - Research Article

Gemmell, N. J., Rutherford, K., Prost, S., Tollis, M., Winter, D., Macey, J. R., … Gardner, P. P., … Hore, T. A., … Dussex, N., Taylor, H., Abe, H., Bond, D. M., … Ngatiwai Trust Board. (2020). The tuatara genome reveals ancient features of amniote evolution. Nature, 584, 403-409. doi: 10.1038/s41586-020-2561-9

Journal - Research Article

Goikoetxea, A., Damsteegt, E. L., Todd, E. V., McNaughton, A., Gemmell, N. J., & Lokman, P. M. (2020). An in vitro ovarian explant culture system to examine sex change in a hermaphroditic fish. PeerJ, 8, e10323. doi: 10.7717/peerj.10323

Journal - Research Article

Jeunen, G.-J., Lamare, M. D., Knapp, M., Spencer, H. G., Taylor, H. R., Stat, M., … Gemmell, N. J. (2020). Water stratification in the marine biome restricts vertical environmental DNA (eDNA) signal dispersal. Environmental DNA, 2(1), 99-111. doi: 10.1002/edn3.49

Journal - Research Article

Johnson, S. L., Borziak, K., Kleffmann, T., Rosengrave, P., Dorus, S., & Gemmell, N. J. (2020). Ovarian fluid proteome variation associates with sperm swimming speed in an externally fertilising fish. Journal of Evolutionary Biology, 33, 1783-1794. doi: 10.1111/jeb.13717

Journal - Research Article

Karelitz, S., Lamare, M., Patel, F., Gemmell, N., & Uthicke, S. (2020). Parental acclimation to future ocean conditions increases development rates but decreases survival in sea urchin larvae. Marine Biology, 167, 2. doi: 10.1007/s00227-019-3610-5

Journal - Research Article

Ortega-Recalde, O., Goikoetxea, A., Hore, T. A., Todd, E. V., & Gemmell, N. J. (2020). The genetics and epigenetics of sex change in fish. Annual Review of Animal Biosciences, 8, 47-69. doi: 10.1146/annurev-animal-021419-083634

Journal - Research Article

Osborne, A. J., Pearson, J. F., Noble, A. J., Gemmell, N. J., Horwood, L. J., Boden, J. M., … Kennedy, M. A. (2020). Genome-wide DNA methylation analysis of heavy cannabis exposure in a New Zealand longitudinal cohort. Translational Psychiatry, 10, 114. doi: 10.1038/s41398-020-0800-3

Journal - Research Article

Peart, C. R., Tusso, S., Pophaly, S. D., Botero-Castro, F., Wu, C.-C., Aurioles-Gamboa, D., … Gemmell, N. J., … Wolf, J. B. W. (2020). Determinants of genetic variation across eco-evolutionary scales in pinnipeds. Nature Ecology & Evolution, 4, 1095-1104. doi: 10.1038/s41559-020-1215-5

Journal - Research Article

Adams, C. I. M., Knapp, M., Gemmell, N. J., Jeunen, G.-J., Bunce, M., Lamare, M. D., & Taylor, H. R. (2019). Beyond biodiversity: Can environmental DNA (eDNA) cut it as a population genetics tool? Gene, 10(3), 192. doi: 10.3390/genes10030192

Journal - Research Article

Dobelmann, J., Alexander, A., Baty, J. W., Gemmell, N. J., Gruber, M. A. M., Quinn, O., … Lester, P. J. (2019). The association between mitochondrial genetic variation and reduced colony fitness in an invasive wasp. Molecular Ecology, 28, 3324-3338. doi: 10.1111/mec.15159

Journal - Research Article

Hendriksen, R. S., Munk, P., Njage, P., van Bunnik, B., McNally, L., Lukjancenko, O., … The Global Sewage Surveillance project consortium, including Jeunen, G.-J., Gemmell, N., … Aarestrup, F. M. (2019). Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage. Nature Communications, 10(1), 1124. doi: 10.1038/s41467-019-08853-3

Journal - Research Article

Jeunen, G.-J., Knapp, M., Spencer, H. G., Lamare, M. D., Taylor, H. R., Stat, M., … Gemmell, N. J. (2019). Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement. Molecular Ecology Resources, 19, 426-438. doi: 10.1111/1755-0998.12982

Journal - Research Article

Jeunen, G.-J., Knapp, M., Spencer, H. G., Taylor, H. R., Lamare, M. D., Stat, M., … Gemmell, N. J. (2019). Species‐level biodiversity assessment using marine environmental DNA metabarcoding requires protocol optimization and standardization. Ecology & Evolution, 9, 1323-1335. doi: 10.1002/ece3.4843

Journal - Research Article

Ortega-Recalde, O., Day, R. C., Gemmell, N. J., & Hore, T. A. (2019). Zebrafish preserve global germline DNA methylation while sex-linked rDNA is amplified and demethylated during feminisation. Nature Communications, 10, 3053. doi: 10.1038/s41467-019-10894-7

Journal - Research Article

Parry, D. A. D., Bruce Fraser, R. D., Alibardi, L., Rutherford, K. M., & Gemmell, N. (2019). Molecular structure of sauropsid β-keratins from tuatara (Sphenodon punctatus). Journal of Structural Biology, 207, 21-28. doi: 10.1016/j.jsb.2019.04.008

Journal - Research Article

Thomas, J. T., Todd, E. V., Muncaster, S., Lokman, P. M., Damsteegt, E. L., Liu, H., … Gemmell, N. J. (2019). Conservation and diversity in expression of candidate genes regulating socially-induced female-male sex change in wrasses. PeerJ, 7, e7032. doi: 10.7717/peerj.7032

Journal - Research Article

Todd, E. V., Ortega-Recalde, O., Liu, H., Lamm, M. S., Rutherford, K. M., Cross, H., Black, M. A., Kardailsky, O., … Hore, T. A., … Gemmell, N. J. (2019). Stress, novel sex genes, and epigenetic reprogramming orchestrate socially controlled sex change. Science Advances, 5(7), eaaw7006. doi: 10.1126/sciadv.aaw7006

Journal - Research Article

Blanchoud, S., Rutherford, K., Zondag, L., Gemmell, N. J., & Wilson, M. J. (2018). De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution. Scientific Reports, 8, 5518. doi: 10.1038/s41598-018-23749-w

Journal - Research Article

Dussex, N., Taylor, H. R., Stovall, W. R., Rutherford, K., Dodds, K. G., Clarke, S. M., & Gemmell, N. J. (2018). Reduced representation sequencing detects only subtle regional structure in a heavily exploited and rapidly recolonizing marine mammal species. Ecology & Evolution, 8, 8736-8749. doi: 10.1002/ece3.4411

Journal - Research Article

Johnson, S. L., Zellhuber-McMillan, S., Gillum, J., Dunleavy, J., Evans, J., Nakagawa, S., & Gemmell, N. J. (2018). Evidence that fertility trades off with early offspring fitness as males age. Proceedings of the Royal Society B, 285(1871), 20172174. doi: 10.1098/rspb.2017.2174

Journal - Research Article

Lee, S. L. J., Horsfield, J. A., Black, M. A., Rutherford, K., & Gemmell, N. J. (2018). Identification of sex differences in zebrafish (Danio rerio) brains during early sexual differentiation and masculinisation using 17α-methyltestoterone. Biology of Reproduction, 99(2), 446-460. doi: 10.1093/biolre/iox175

Journal - Research Article

Martinez, B., Khudyakov, J., Rutherford, K., Crocker, D. E., Gemmell, N., & Ortiz, R. M. (2018). Adipose transcriptome analysis provides novel insights into molecular regulation of prolonged fasting in northern elephant seal pups. Physiological Genomics, 50(7), 495-503. doi: 10.1152/physiolgenomics.00002.2018

Journal - Research Article

Renart, J., San Mauro, D., Agorreta, A., Rutherford, K., Gemmell, N. J., & Quintanilla, M. (2018). Evolutionary history of the podoplanin gene. Gene Reports, 13, 28-37. doi: 10.1016/j.genrep.2018.08.005

Journal - Research Article

Stoffel, M. A., Humble, E., Paijmans, A. J., Acevedo-Whitehouse, K., Chilvers, B. L., Dickerson, B., … Gemmell, N. J., … Robertson, B. C., … Hoffmann, J. I. (2018). Demographic histories and genetic diversity across pinnipeds are shaped by human exploitation, ecology and life-history. Nature Communications, 9(1), 4836. doi: 10.1038/s41467-018-06695-z

Journal - Research Article

Stovall, W. R., Taylor, H. R., Black, M., Grosser, S., Rutherford, K., & Gemmell, N. J. (2018). Genetic sex assignment in wild populations using genotyping‐by‐sequencing data: A statistical threshold approach. Molecular Ecology Resources, 18(2), 179-190. doi: 10.1111/1755-0998.12767

Journal - Research Article

Todd, E. V., Liu, H., Lamm, M. S., Thomas, J. T., Rutherford, K., Thompson, K. C., … Gemmell, N. J. (2018). Female mimicry by sneaker males has a transcriptomic signature in both the brain and gonad in a sex-changing fish. Molecular Biology & Evolution, 35(1), 225-241. doi: 10.1093/molbev/msx293

Journal - Research Article

Zavodna, M., Bagshaw, A., Brauning, R., & Gemmell, N. J. (2018). The effects of transcription and recombination on mutational dynamics of short tandem repeats. Nucleic Acids Research, 46(3), 1321-1330. doi: 10.1093/nar/gkx1253

Journal - Research Article

Bagshaw, A. T. M., Horwood, L. J., Fergusson, D. M., Gemmell, N. J., & Kennedy, M. A. (2017). Microsatellite polymorphisms associated with human behavioural and psychological phenotypes including a gene-environment interaction. BMC Medical Genetics, 18, 12. doi: 10.1186/s12881-017-0374-y

Journal - Research Article

Bartlett, M. J., Steeves, T. E., Gemmell, N. J., & Rosengrave, P. C. (2017). Sperm competition risk drives rapid ejaculate adjustments mediated by seminal fluid. eLIFE, 6, e28811. doi: 10.7554/eLife.28811

Journal - Research Article

Geßner, C., Nakagawa, S., Zavodna, M., & Gemmell, N. J. (2017). Sexual selection for genetic compatibility: The role of the major histocompatibility complex on cryptic female choice in Chinook salmon (Oncorhynchus tshawytscha). Heredity, 118, 442-452. doi: 10.1038/hdy.2016.116

Journal - Research Article

Gessner, C., Johnson, S. L., Fisher, P., Clarke, S., Rutherford, K., Symonds, J., & Gemmell, N. J. (2017). Male-female relatedness at specific SNP-linkage groups influences cryptic female choice in Chinook salmon (Oncorhynchus tshawytscha). Proceedings of the Royal Society B, 284(1859), 20170853. doi: 10.1098/rspb.2017.0853

Journal - Research Article

Grosser, S., Abdelkrim, J., Wing, J., Robertson, B. C., & Gemmell, N. J. (2017). Strong isolation by distance argues for separate population management of endangered blue duck (Hymenolaimus malacorhynchos). Conservation Genetics, 18(2), 327-341. doi: 10.1007/s10592-016-0908-4

Journal - Research Article

Lee, S. L. J., Horsfield, J. A., Black, M. A., Rutherford, K., Fisher, A., & Gemmell, N. J. (2017). Histological and transcriptomic effects of 17α-methyltestosterone on zebrafish gonad development. BMC Genomics, 18, 557. doi: 10.1186/s12864-017-3915-z

Journal - Research Article

Liu, H., Todd, E. V., Lokman, M. P., Lamm, M. S., Godwin, J. R., & Gemmell, N. J. (2017). Sexual plasticity: A fishy tale. Molecular Reproduction & Development, 84(2), 171-194. doi: 10.1002/mrd.22691

Journal - Research Article

Nyegaard, M., Sawai, E., Gemmell, N., Gillum, J., Loneragan, N. R., Yamanoue, Y., & Stewart, A. L. (2017). Hiding in broad daylight: Molecular and morphological data reveal a new ocean sunfish species (Tetraodontiformes: Molidae) that has eluded recognition. Zoological Journal of the Linnean Society, 182(3), 631-658. doi: 10.1093/zoolinnean/zlx040

Journal - Research Article

Tourmente, M., Hirose, M., Ibrahim, S., Dowling, D., Tompkins, D. M., Roldan, E. R. S., & Gemmell, N. J. (2017). mtDNA polymorphism and metabolic inhibition affect sperm performance in conplastic mice. Reproduction, 154(4), 341-354. doi: 10.1530/rep-17-0206

Journal - Research Article

Wolff, J. N., Gemmell, N. J., Tompkins, D. M., & Dowling, D. K. (2017). Introduction of a male-harming mitochondrial haplotype via 'Trojan Females' achieves population suppression in fruit flies. eLIFE, 6, e23551. doi: 10.7554/eLife.23551

Journal - Research Article

Wu, C., Jordan, M. D., Newcomb, R. D., Gemmell, N. J., Bank, S., Meusemann, K., Dearden, P. K., … Grosser, S., … Buckley, T. R. (2017). Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution. BMC Genomics, 18, 795. doi: 10.1186/s12864-017-4197-1

Journal - Research Article

Abe, H., & Gemmell, N. J. (2016). Evolutionary footprints of short tandem repeats in avian promoters. Scientific Reports, 6, 19421. doi: 10.1038/srep19421

Journal - Research Article

Dussex, N., Robertson, B. C., Salis, A. T., Kalinin, A., Best, H., & Gemmell, N. J. (2016). Low spatial genetic differentiation associated with rapid recolonization in the New Zealand fur seal Arctocephalus forsteri. Journal of Heredity, 107(7), 581-592. doi: 10.1093/jhered/esw056

Journal - Research Article

Flynn, T., Signal, B., Johnson, S. L., & Gemmell, N. J. (2016). Mitochondrial genome diversity among six laboratory zebrafish (Danio rerio) strains. Mitochondrial DNA, 27(6), 4364-4371. doi: 10.3109/19401736.2015.1089536

Journal - Research Article

Osborne, A. J., Negro, S. S., Chilvers, B. L., Robertson, B. C., Kennedy, M. A., & Gemmell, N. J. (2016). Genetic evidence of a population bottleneck and inbreeding in the endangered New Zealand sea lion, Phocarctos hookeri. Journal of Heredity, 107(5), 392-402. doi: 10.1093/jhered/esw015

Journal - Research Article

Rosengrave, P., Montgomerie, R., & Gemmell, N. (2016). Cryptic female choice enhances fertilization success and embryo survival in Chinook salmon. Proceedings of the Royal Society B, 283(1827), 20160001. doi: 10.1098/rspb.2016.0001

Journal - Research Article

Salis, A. T., Easton, L. J., Robertson, B. C., Gemmell, N., Smith, I. W. G., Weisler, M. I., Waters, J. M., & Rawlence, N. J. (2016). Myth or relict: Does ancient DNA detect the enigmatic Upland seal? Molecular Phylogenetics & Evolution, 97, 101-106. doi: 10.1016/j.ympev.2015.12.012

Journal - Research Article

Smith, L. M., Parr-Brownlie, L. C., Duncan, E. J., Black, M. A., Gemmell, N. J., Dearden, P. K., & Reynolds, J. N. J. (2016). Striatal mRNA expression patterns underlying peak dose L-DOPA-induced dyskinesia in the 6-OHDA hemiparkinsonian rat. Neuroscience, 324, 238-251. doi: 10.1016/j.neuroscience.2016.03.012

Journal - Research Article

Todd, E. V., Black, M. A., & Gemmell, N. J. (2016). The power and promise of RNA-seq in ecology and evolution. Molecular Ecology, 25(6), 1224-1241. doi: 10.1111/mec.13526

Journal - Research Article

Wolff, J. N., Tompkins, D. M., Gemmell, N. J., & Dowling, D. K. (2016). Mitonuclear interactions, mtDNA-mediated thermal plasticity, and implications for the Trojan Female Technique for pest control. Scientific Reports, 6, 30016. doi: 10.1038/srep30016

Journal - Research Article

Zondag, L. E., Rutherford, K., Gemmell, N. J., & Wilson, M. J. (2016). Uncovering the pathways underlying whole body regeneration in a chordate model, Botrylloides leachi using de novo transcriptome analysis. BMC Genomics, 17, 114. doi: 10.1186/s12864-016-2435-6

Journal - Research Article

Carr, L. M., McLenachan, P. A., Waddell, P. J., Gemmell, N. J., & Penny, D. (2015). Analyses of the mitochondrial genome of Leiopelma hochstetteri argues against the full drowning of New Zealand. Journal of Biogeography, 42(6), 1066-1076. doi: 10.1111/jbi.12482

Journal - Research Article

Dowling, D., Tompkins, D. M., & Gemmell, N. J. (2015). The Trojan Female Technique for pest control: A candidate mitochondrial mutation confers low male fertility across diverse nuclear backgrounds in Drosophila melanogaster. Evolutionary Applications, 8(9), 871-880. doi: 10.1111/eva.12297

Journal - Research Article

Gemmell, N., & Wolff, J. N. (2015). Mitochondrial replacement therapy: Cautiously replace the master manipulator [Commentary]. BioEssays, 37(6), 584-585. doi: 10.1002/bies.201500008

Journal - Research Article

Johnson, S. L., Dunleavy, J., Gemmell, N. J., & Nakagawa, S. (2015). Consistent age-dependent declines in human semen quality: A systematic review and meta-analysis. Ageing Research Reviews, 19, 22-33. doi: 10.1016/j.arr.2014.10.007

Journal - Research Article

Koepfli, K.-P., Paten, B., the Genome 10K Community of Scientists, O'Brien, S. J., also, & Gemmell, N. (2015). The Genome 10K Project: A way forward. Annual Review of Animal Biosciences, 3, 57-111. doi: 10.1146/annurev-animal-090414-014900

Journal - Research Article

Liu, H., Lamm, M. S., Rutherford, K., Black, M. A., Godwin, J. R., & Gemmell, N. J. (2015). Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish. Biology of Sex Differences, 6, 26. doi: 10.1186/s13293-015-0044-8

Journal - Research Article

Osborne, A. J., Pearson, J., Chilvers, B. L., Kennedy, M. A., & Gemmell, N. J. (2015). Examining the role of components of Slc11a1 (Nramp1) in the susceptibility of New Zealand sea lions (Phocarctos hookeri) to disease. PLoS ONE, 10(4), e0122703. doi: 10.1371/journal.pone.0122703

Journal - Research Article

Osborne, A. J., Pearson, J., Negro, S. S., Chilvers, B. L., Kennedy, M. A., & Gemmell, N. J. (2015). Heterozygote advantage at MHC DRB may influence response to infectious disease epizootics. Molecular Ecology, 24, 1419-1432. doi: 10.1111/mec.13128

Journal - Research Article

Sawaya, S., Boocock, J., Black, M. A., & Gemmell, N. J. (2015). Exploring possible DNA structures in real-time polymerase kinetics using Pacific Biosciences sequencer data. BMC Bioinformatics, 16, 21. doi: 10.1186/s12859-014-0449-0

Journal - Research Article

Will, M., McCowan, T., & Gemmell, N. J. (2015). Broad-scale genetic patterns of New Zealand abalone, Haliotis iris, across a distribution spanning 13° latitude and major oceanic water masses. Genetica, 143, 487-500. doi: 10.1007/s10709-015-9847-0

Journal - Research Article