2025
Journal - Research Article
Moser, T. V., Bond, D. M., & Hore, T. A. (2025). Variant ribosomal DNA is essential for female differentiation in zebrafish. Philosophical Transactions of the Royal Society B, 380, 20240107. doi: 10.1098/rstb.2024.0107
Dunnet, M. J., Morison, I. M., Bond, D. M., & Hore, T. A. (2025). High-throughput, pan-leukocyte biomarkers for the detection of inflammation in human breastmilk and stool. Frontiers in Epigenetics & Epigenomics, 3, 535838. doi: 10.3389/freae.2025.1535838
Sugrue, V. J., Prescott, M., Glendining, K. A., Bond, D. M., Horvath, S., Anderson, G. M., Garratt, M., Campbell, R. E., & Hore, T. A. (2025). The androgen clock is an epigenetic predictor of long-term male hormone exposure. PNAS, 122(3), e2420087121. doi: 10.1073/pnas.2420087121
Conference Contribution - Published proceedings: Abstract
Sugrue, V. J., Prescott, M., Glendining, K. A., Zoller, J. A., Narayan, P., Lu, A. T., Bond, D. M., Ortega-Recalde, O. J., … Anderson, G. M., Garratt, M., Horvath, S., Campbell, R. E., & Hore, T. A. (2025). Building the androgen clock: An epigenetic predictor of long-term male hormone exposure. Proceedings of the Genetics Otago (GO) Annual Symposium. Retrieved from https://blogs.otago.ac.nz/go
2024
Journal - Research Article
Bennington, S. M., Bourke, S. D., Wilkinson, S. P., Englebert, N., Bond, D. M., Jeunen, G.-J., Dawson, S., Slooten, E., Dillingham, P. W., Rayment, W. J., & Alexander, A. (2024). New insights into the population structure of Hector's dolphin (Cephalorhynchus hectori) revealed using environmental DNA. Environmental DNA, 6, e70024. doi: 10.1002/edn3.70024
Newman, T., Bond, D. M., Ishihara, T., Rizzoli, P., Gouil, Q., Hore, T. A., … Renfree, M. B. (2024). PRKACB is a novel imprinted gene in marsupials. Epigenetics & Chromatin, 17, 29. doi: 10.1186/s13072-024-00552-8
Milton, A. M., Marín-Gual, L., Lister, N. C., McIntyre, K. L., Grady, P. G. S., Laird, M. K., Bond, D. M., Hore, T. A., … Waters, P. D. (2024). Imprinted X chromosome inactivation in marsupials: The paternal X arrives at the egg with a silent DNA methylation profile. PNAS, 121(36), e2412185121. doi: 10.1073/pnas.2412185121
Bond, D. M., Veale, A., Alexander, A., & Hore, T. A. (2024). Coat colour in marsupials: Genetic variants at the ASIP locus determine grey and black fur of the brushtail possum. Royal Society Open Science, 11(7), 240806. doi: 10.1098/rsos.240806
Conference Contribution - Verbal presentation and other Conference outputs
Sugrue, V. J., Prescott, M., Glendining, K. A., Zoller, J. A., Narayan, P., Lu, A. T., Bond, D. M., Ortega-Recalde, O. J., … Anderson, G. M., Garratt, M., … Campbell, R. E., & Hore, T. A. (2024, August-September). Androgen-dependent effects on epigenetic aging based on DNA methylation at androgen-regulated loci. Verbal presentation at the 18th New Zealand Medical Sciences Congress (MedSci), Queenstown, New Zealand.
Other Research Output
Bond, D. (2024). Data from: Amplicon sequencing data for genetic variants at the ASIP locus that determine grey and black fur of the brushtail possum. doi: 10.5061/dryad.ncjsxkt3x
2023
Journal - Research Article
Bond, D. M., Ortega-Recalde, O., Laird, M. K., Hayakawa, T., Richardson, K. S., Reese, F. C. B., Kyle, B., McIsaac-Williams, B. E., Robertson, B. C., van Heezik, Y., Adams, A. L., … Gemmell, N. J., Alexander, A., & Hore, T. A. (2023). The admixed brushtail possum genome reveals invasion history in New Zealand and novel imprinted genes. Nature Communications, 14, 6364. doi: 10.1038/s41467-023-41784-8
Conference Contribution - Published proceedings: Abstract
Newman, T., Ishihara, T., Rizzoli, P., Xiao, L., Gouil, Q., Bond, D., Hore, T., … Renfree, M. B. (2023). The PRKACB locus is imprinted in marsupials. Proceedings of the ESA-SRB and ENSA Annual Scientific Meeting. 209. Retrieved from https://www.endocrinesociety.org.au
Sugrue, V. J., Zoller, J. A., Narayan, P., Lu, A. T., Ortega-Recalde, O. J., Grant, M. J., … Bond, D. M., … Campbell, R., Garratt, M., … Hore, T. A. (2023). Male-specific DNA aging and building the Androgen Clock. Proceedings of the Genetics Otago (GO) Annual Symposium & Workshops. Retrieved from https://blogs.otago.ac.nz/go
2022
Journal - Research Article
Perez-Santangelo, S., Napier, N., Robson, F., Weller, J. L., Bond, D. M., & Macknight, R. C. (2022). A point mutation in Phytochromobilin synthase alters the circadian clock and photoperiodic flowering of Medicago truncatula. Plants, 11(3), 239. doi: 10.3390/plants11030239
Conference Contribution - Verbal presentation and other Conference outputs
Bond, D. M., Ortega-Recalde, O. J., Laird, M. K., Richardson, K. S., Reese, F. C. B., Alexander, A. M., … Gemmell, N. J., & Hore, T. A. (2022, August-September). Long read sequencing and understanding the genome and biology of the New Zealand Brushtail Possum. Verbal presentation at the 31st Queenstown Molecular Biology Meeting (QMB), Queenstown, New Zealand.
Sugrue, V. J., Zoller, J. A., Narayan, P., Lu, A. T., Ortega-Recalde, O. J., Grant, M. J., … Bond, D. M., … Campbell, R., Garratt, M., … Hore, T. A. (2022, August-September). Male-specific DNA aging and building the Androgen Clock. Verbal presentation at the 16th New Zealand Medical Sciences Congress (MedSci), Queenstown, New Zealand.
2021
Chapter in Book - Research
Ortega-Recalde, O., Peat, J. R., Bond, D. M., & Hore, T. A. (2021). Estimating global methylation and erasure using low-coverage whole-genome bisulfite sequencing (WGBS). In O. Bogdanovic & M. Vermeulen (Eds.), TET proteins and DNA demethylation: Methods and protocols: Methods in molecular biology (Vol. 2272). (pp. 29-44). New York, NY: Springer. doi: 10.1007/978-1-0716-1294-1_3
Journal - Research Article
Sugrue, V. J., Zoller, J. A., Narayan, P., Lu, A. T., Ortega-Recalde, O. J., Grant, M. J., … Bond, D. M., … Garratt, M., … Hore, T. A., & Horvath, S. (2021). Castration delays epigenetic aging and feminizes DNA methylation at androgen-regulated loci. eLIFE, 10, e64932. doi: 10.7554/eLife.64932
Conference Contribution - Published proceedings: Abstract
Dunnet, M. J., Bond, D. M., Waters, S. A., Morison, I. M., & Hore, T. A. (2021). Cell-specific DNA methylation patterns of leukocytes and their implications for epigenetic analyses of health and disease. Proceedings of the 16th Congress of the Federation of Asian & Oceanic Biochemists & Molecular Biologists (FAOBMB). (pp. 81). Retrieved from https://www.faobmb2021.org
Dunnet, M. J., Bond, D. M., Waters, S. A., Morison, I. M., & Hore, T. A. (2021). Cell-specific DNA methylation patterns of leukocytes and their implication for epigenetic analyses of health and disease. Proceedings of the Genetics Otago (GO) Annual Symposium. Retrieved from https://blogs.otago.ac.nz/go
Sugrue, V. J., Zoller, J. A., Narayan, P., Lu, A. T., Ortega-Recalde, O. J., Grant, M. J., … Bond, D. M., … Garratt, M., … Hore, T. A., & Horvath, S. (2021). Castration delays epigenetic aging and feminises DNA methylation at androgen- regulated loci. Proceedings of the Genetics Otago (GO) Annual Symposium. Retrieved from https://blogs.otago.ac.nz/go
Bond, D. M., Ortega-Recalde, O. J., Laird, M. K., Richardson, K. S., Reese, F. C. B., Alexander, A. M., Adams, A. L., van Heezik, Y., Robertson, B. C., The Vertebrate Genomes Project, Gemmell, N. J., & Hore, T. A. (2021). Sequencing the genome of the New Zealand brushtail possum: A platform for biological discovery and pest control. Proceedings of the Genetics Otago (GO) Annual Symposium. Retrieved from https://blogs.otago.ac.nz/go
2020
Journal - Research Article
Gemmell, N. J., Rutherford, K., Prost, S., Tollis, M., Winter, D., Macey, J. R., … Gardner, P. P., … Hore, T. A., … Dussex, N., Taylor, H., Abe, H., Bond, D. M., … Ngatiwai Trust Board. (2020). The tuatara genome reveals ancient features of amniote evolution. Nature, 584, 403-409. doi: 10.1038/s41586-020-2561-9
2019
Journal - Research Article
Oberacker, P., Stepper, P., Bond, D. M., Höhn, S., Focken, J., Meyer, V., … Sugrue, V. J., Jeunen, G.-J., Moser, T., … Hore, T. A., & Jurkowski, T. P. (2019). Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation. PLoS Biology, 17(1), e3000107. doi: 10.1371/journal.pbio.3000107
Journal - Research Other
Oberacker, P., Stepper, P., Bond, D., Hipp, K., Hore, T. A., & Jurkowski, T. P. (2019). Simple synthesis of functionalized paramagnetic beads for nucleic acid purification and manipulation. Bio-protocol, 9(20), e3394. doi: 10.21769/BioProtoc.3394
2016
Journal - Research Article
Bond, D. M., Albert, N. W., Lee, R. H., Gillard, G. B., Brown, C. M., Hellens, R. P., & Macknight, R. C. (2016). Infiltration-RNAseq: Transcriptome profiling of Agrobacterium-mediated infiltration of transcription factors to discover gene function and expression networks in plants. Plant Methods, 12, 41. doi: 10.1186/s13007-016-0141-7
2015
Journal - Research Article
Bond, D. M., & Baulcombe, D. C. (2015). Epigenetic transitions leading to heritable, RNA-mediated de novo silencing in Arabidopsis thaliana. PNAS, 112(3), 917-922. doi: 10.1073/pnas.1413053112
2014
Journal - Research Article
Bond, D. M., & Baulcombe, D. C. (2014). Small RNAs and heritable epigenetic variation in plants. Trends in Cell Biology, 24(2), 100-107. doi: 10.1016/j.tcb.2013.08.001
Conference Contribution - Published proceedings: Abstract
Baulcombe, D., Shivaprasad, P., Gouil, Q., & Bond, D. (2014). When genomes meet: RNA, epigenetics and phenotypes of hybrid plant. FEBS Journal, 281(Suppl. 1), (pp. 6). doi: 10.1111/febs.12916
2012
Journal - Research Article
Shivaprasad, P. V., Chen, H.-M., Patel, K., Bond, D. M., Santos, B. A. C. M., & Baulcombe, D. C. (2012). A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs. Plant Cell, 24(3), 859-874. doi: 10.1105/tpc.111.095380
2004
Conference Contribution - Poster Presentation (not in published proceedings)
Ward, T., Bond, D., Laurie, R., & Macknight, R. (2004, November). Bimolecular fluorescence complementation: A new tool for studying protein-protein interactions in plants. Poster session presented at the 14th Annual Queenstown Molecular Biology Meeting, Queenstown, New Zealand.
