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Edited Book - Research

Tate, W. P., & Peppercorn, K. (Eds.). (2025). Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS): Methods and protocols: Methods in molecular biology (Vol. 2920). New York, NY: Humana Press. doi: 10.1007/978-1-0716-4498-0

Eaton-Rye, J. J., Tripathy, B. C., & Sharkey, T. D. (Eds.). (2012). Photosynthesis: Plastid biology, energy conversion and carbon assimilation. New York: Springer, 856p. doi: 10.1007/978-94-007-1579-0

Chapter in Book - Research

Edgar, C. D., Blair, A., & Tate, W. P. (2025). Measurement of genetic variations in ME/CFS patients in the IDO2 gene encoding an enzyme metabolizing tryptophan. In W. P. Tate & K. Peppercorn (Eds.), Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS): Methods and protocols: Methods in molecular biology (Vol. 2920). (pp. 247-256). New York, NY: Humana Press. doi: 10.1007/978-1-0716-4498-0_14

Kumar, A., Peppercorn, K., & Kleffmann, T. (2025). Quantitative proteomics on immune cells of ME/CFS patients using SWATH-MS. In W. P. Tate & K. Peppercorn (Eds.), Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS): Methods and protocols: Methods in molecular biology (Vol. 2920). (pp. 113-140). New York, NY: Humana Press. doi: 10.1007/978-1-0716-4498-0_8

Peppercorn, K., Edgar, C. D., Al Momani, S., Rodger, E. J., Tate, W. P., & Chatterjee, A. (2025). Application of DNA methylome analysis to patients with ME/CFS. In W. P. Tate & K. Peppercorn (Eds.), Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS): Methods and protocols: Methods in molecular biology (Vol. 2920). (pp. 141-160). New York, NY: Humana Press. doi: 10.1007/978-1-0716-4498-0_9

Morris, J., Liddy, M., & Marshall, C. J. (2024). Ice shell purification of ice-active compounds. In R. Drori & C. A. Stevens (Eds.), Ice binding proteins: Methods and protocols: Methods in molecular biology (Vol. 2730). (pp. 25-34). New York, NY: Humana Press. doi: 10.1007/978-1-0716-3503-2_2

Decourtye-Espiard, L., & Guilford, P. (2023). The chemoprevention of hereditary diffuse gastric cancer. In G. Corso, P. Veronesi & F. Roviello (Eds.), Hereditary gastric and breast cancer syndrome: CDH1: One genotype with multiple phenotypes. (pp. 321-341). Cham, Switzerland: Springer. doi: 10.1007/978-3-031-21317-5_21

Diermeier, S. D., & Leask, M. P. (2023). History and definitions of ncRNAs. In J. Sztuba-Solinska (Ed.), Navigating non-coding RNA: From biogenesis to therapeutic application. (pp. 1-46). London, UK: Academic Press. doi: 10.1016/B978-0-323-90406-3.00002-6

Kavle, R. R., Pritchard, E., Bekhit, A. E.-D. A., Carne, A., & Agyei, D. (2023). Nutrient content and functionalities of edible insects. In S. Grasso & M. Bordiga (Eds.), Edible insects processing for food and feed: From startups to mass production. (pp. 53-84). Boca Raton, FL: CRC Press. doi: 10.1201/9781003165729-4

Nolan, P., Mahmoud, A. E., Kavle, R. R., Carne, A., Bekhit, A. E.-D. A., & Agyei, D. (2023). Edible insects: Protein composition, digestibility, and biofunctionalities. In Z. F. Bhat, J. D. Morton, A. E.-D. A. Bekhit & H. A. R. Suleria (Eds.), Processing technologies and food protein digestion. (pp. 429-494). London, UK: Academic Press. doi: 10.1016/B978-0-323-95052-7.00020-0

Torbati, E., Stuart, G., Krause, K., Brown, C., & Wise, L. (2023). Methods to assess chemokine binding and anti-chemotactic activity of virus proteins. In A. R. Lucas (Ed.), Chemokine-glycosaminoglycan interactions: Methods and protocols: Methods in molecular biology (Vol. 2597). (pp. 217-234). New York, N Y: Humana Press. doi: 10.1007/978-1-0716-2835-5_16

Ahmed, I. A. M., Al-Juhaimi, F. Y., Bhat, Z. F., Carne, A., & Bekhit, A. E.-D. (2022). Non-traditional meat sources, production, nutritional and health aspects, consideration of safety aspects and religious views. In A. E.-D. A. Bekhit, W. W. Riley & M. A. Hussain (Eds.), Alternative proteins: Safety and food security considerations. (pp. 215-270). Boca Raton, FL: CRC Press. doi: 10.1201/9780429299834-8

Ahmmed, M. K., Ahmmed, F., Carne, A., Tian, H. S., & Bekhit, A. E.-D. A. (2022). Fish roe phospholipids and health: Composition, extraction, storage and brain health application. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 93-142). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00005-9

Amin, H. F., Carne, A., & Bekhit, A. E.-D. A. (2022). Fish roe products: Middle East perspective. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 283-310). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00010-2

Bekhit, A. E.-D. A., Ahmmed, M. K., Sicuro, B., Ghelichi, S., & Carne, A. (2022). Fish roe products: European perspective. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 311-341). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00012-6

Bunga, S., Carne, A., & Bekhit, A. E.-D. A. (2022). Composition and nutrition of fish roes. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 41-92). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00011-4

Irvani, N., Carne, A., Agyei, D., & Oey, I. (2022). Algae as an alternative source of protein. In A. E.-D. A. Bekhit, W. W. Riley & M. A. Hussain (Eds.), Alternative proteins: Safety and food security considerations. (pp. 65-84). Boca Raton, FL: CRC Press. doi: 10.1201/9780429299834-4

Jamieson, S. A., McMillan, H. D., & Mace, P. D. (2022). Structural and biophysical characterization of Tribbles homolog 1. In A. M. Pyle & D. W. Christianson (Eds.), Methods in enzymology (Vol. 667). (pp. 37-58). Cambridge, MA: Elsevier. doi: 10.1016/bs.mie.2022.03.023

Marsman, J., Day, R. C., & Gimenez, G. (2022). Circular chromosome conformation capture sequencing (4C-Seq ) in primary adherent cells. In J. Horsfield & J. Marsman (Eds.), Chromatin: Methods and protocols: Methods in molecular biology (Vol. 2458). (pp. 301-320). New York, NY: Springer. doi: 10.1007/978-1-0716-2140-0_16

Sarkar, D., & Diermeier, S. D. (2022). LncRNA-chromatin pull-down using biotin-conjugated DNA probes. In J. Horsfield & J. Marsman (Eds.), Chromatin: Methods and protocols: Methods in molecular biology (Vol. 2458). (pp. 345-357). New York, NY: Springer. doi: 10.1007/978-1-0716-2140-0_19

Smith, A. M., Batson, P. B., Achilleos, K., & Tamberg, Y. (2022). Collecting and culturing bryozoans for regenerative studies. In S. Blanchoud & B. Galliot (Eds.), Whole-body regeneration: Methods and protocols: Methods in molecular biology (Vol. 2450). (pp. 151-177). New York, NY: Springer. doi: 10.1007/978-1-0716-2172-1_8

Smith, J., Day, R. C., & Weeks, R. J. (2022). Next-generation bisulfite sequencing for targeted DNA methylation analysis. In J. Horsfield & J. Marsman (Eds.), Chromatin: Methods and protocols: Methods in molecular biology (Vol. 2458). (pp. 47-62). New York, NY: Springer. doi: 10.1007/978-1-0716-2140-0_3

Sollitto, M., Kenny, N. J., Greco, S., Tucci, C. F., Calcino, A. D., & Gerdol, M. (2022). Detecting structural variants and associated gene presence-absence variation phenomena in the genomes of marine organisms. In C. Verde & D. Giordano (Eds.), Marine genomics: Methods and protocols: Methods in molecular biology (Vol. 2498). (pp. 53-76). New York, NY: Springer. doi: 10.1007/978-1-0716-2313-8_4

Tantamacharik, T., Carne, A., Shavandi, A., & Bekhit, A. E.-D. A. (2022). Keratin as an alternative protein in food and nutrition. In A. E.-D. A. Bekhit, W. W. Riley & M. A. Hussain (Eds.), Alternative proteins: Safety and food security considerations. (pp. 173-214). Boca Raton, FL: CRC Press. doi: 10.1201/9780429299834-7

Verachia, W., Bekhit, A. E.-D. A., Carne, A., & Bekhit, A. A. (2022). Fish roe from sea urchin: Composition, processing, and quality aspects. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 143-181). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00002-3

Brinkman, F. S. L., Winson, G. L., Done, R. E., Filloux, A., Francis, V. I., Goldberg, J. B., … Lamont, I. L., … Welch, M. (2021). The Pseudomonas aeruginosa whole genome sequence: A 20th anniversary celebration. In R. K. Poole & D. J. Kelly (Eds.), Advances in microbial physiology. (pp. 25-88). London, UK: Elsevier. doi: 10.1016/bs.ampbs.2021.07.001

Gullo, I., Oliveira, C., van der Post, R. S., van Dieren, J. M., Davis, J. L., Bougen-Zhukov, N., Guilford, P., & Carneiro, F. (2021). Updated perspective and directions on hereditary diffuse gastric cancer. In B. Jenkins (Ed.), Research and clinical applications of targeting gastric neoplasms. (pp. 217-258). London, UK: Elsevier. doi: 10.1016/B978-0-323-85563-1.00011-3

Bredow, M., Tomalty, H. E., Graham, L. A., Gruneberg, A. K., Middleton, A. J., Vanderbeld, B., … Walker, V. K. (2020). Isolation and characterization of ice-binding proteins from higher plants. In D. K. Hincha & E. Zuther (Eds.), Plant cold acclimation: Methods and protocols: Methods in molecular biology (Vol. 2156). (2nd ed.) (pp. 303-332). New York, NY: Humana Press. doi: 10.1007/978-1-0716-0660-5_21

Cridge, A. G., Dearden, P. K., & Brownfield, L. R. (2019). The developmental hourglass in the evolution of embryogenesis. In L. N. de la Rosa & G. Müller (Eds.), Evolutionary developmental biology: A reference guide. Cham, Switzerland: Springer. doi: 10.1007/978-3-319-33038-9

Dearden, P. K. (2019). Hourglass or twisted ribbon? In W. Tworzydlo & S. M. Bilinski (Eds.), Evo-Devo: Non-model species in cell developmental biology: Results and problems in cell differentiation. (pp. 21-29). Cham, Switzerland: Springer. doi: 10.1007/978-3-030-23459-1_2

Douglass, A., & Legge, M. (2019). Regulating, surrogacy in New Zealand: Evolving policy and cautious liberalism under the HART Act. In A. Masselot & R. Powell (Eds.), Perspectives on commercial surrogacy in New Zealand: Ethics, law, policy and rights. (pp. 1-24). Christchurch, New Zealand: Centre for Commercial & Corporate Law, University of Canterbury.

Fagerlund, R. D., Ferguson, T. J., Maxwell, H. W. R., Opel-Reading, H. K., Krause, K. L., & Fineran, P. C. (2019). Reconstitution of CRISPR adaptation in vitro and its detection by PCR. In S. Bailey (Ed.), Methods in enzymology (Vol. 616: CRISPR-Cas enzymes). (pp. 411-433). Cambridge, MA: Academic Press. doi: 10.1016/bs.mie.2018.10.024

Maschio, L., Parnell, A. E., Lees, N. R., Willis, C. L., Schaffitzel, C., Stach, J. E. M., & Race, P. R. (2019). Cloning, expression, and purification of intact polyketide synthase modules. In C. Schmidt-Dannert & M. B. Quin (Eds.), Methods in enzymology: (Vol. 617): Metabolons and supramolecular enzyme assemblies. (pp. 63-82). Cambridge, MA: Academic Press. doi: 10.1016/bs.mie.2018.12.018

Shavandi, A., Hou, Y., Carne, A., McConnell, M., & Bekhit, A. E.-D. A. (2019). Marine waste utilization as a source of functional and health compounds. In F. Toldrá (Ed.), Advances in food and nutrition research (Vol. 87). (pp. 187-254). Cambridge, MA: Elsevier. doi: 10.1016/bs.afnr.2018.08.001

Basak, I., & Møller, S. G. (2018). Plant thermotolerance proteins, misfolded proteins, and neurodegenerative diseases. In A. R. Kermode & L. Jiang (Eds.), Molecular pharming: Applications, challenges, and emerging areas. (pp. 457-474). Hoboken, NJ: John Wiley & Sons. doi: 10.1002/9781118801512.ch18

Burrow, K., Young, W., Carne, A., McConnell, M., & Bekhit, A. E.-D. (2018). Interactions of milk proteins with minerals. In G. W. Smithers (Ed.), Reference module in food science. Elsevier. doi: 10.1016/B978-0-08-100596-5.22489-X

Ehrhardt, M. K. G., Warring, S. L., & Gerth, M. L. (2018). Screening chemoreceptor-ligand interactions by high-throughput thermal-shift assays. In M. D. Manson (Ed.), Bacterial chemosensing: Methods and protocols: Methods in molecular biology (Vol. 1729). (pp. 281-290). New York, NY: Humana Press. doi: 10.1007/978-1-4939-7577-8_22

Mungure, T. E., Bekhit, A. E.-D., Carne, A., Roohinejad, S., Mallikarjunan, K., & Birch, J. (2018). Application of HPLC in characterisation of triacylglycerols and detection of adulteration in cold pressed seed oils. In G. W. Smithers (Ed.), Reference module in food science. Elsevier. doi: 10.1016/B978-0-08-100596-5.22526-2

Tantamacharik, T., Carne, A., Agyei, D., Birch, J., & Bekhit, A. E.-D. A. (2018). Use of plant proteolytic enzymes for meat processing. In M. G. Guevara & G. R. Daleo (Eds.), Biotechnological applications of plant proteolytic enzymes. (pp. 43-67). Cham, Switzerland: Springer. doi: 10.1007/978-3-319-97132-2_3

Weller, J. L., & Macknight, R. C. (2018). Functional genomics and flowering time in Medicago truncatula: An overview. In L. A. Cañas & J. P. Beltrán (Eds.), Functional genomics in Medicago truncatula: Methods and protocols: Methods in molecular biology (Vol. 1822). (pp. 261-271). New York, NY: Humana Press. doi: 10.1007/978-1-4939-8633-0_17

Bekhit, A. E.-D. A., Carne, A., Ryder, K., Ha, M., & Kong, L. (2017). Manipulation of meat structure: Use of exogenous proteases. In A. E.-D. A. Bekhit (Ed.), Advances in meat processing technology. (pp. 65-120). Boca Raton, FL: CRC Press. doi: 10.1201/9781315371955

Bekhit, A. E.-D. A., Suwandy, V., Carne, A., Mohamed Ahmed, I. A., & Wang, Z. (2017). Manipulation of meat quality: Electrical stimulation and pulsed electric field. In A. E.-D. A. Bekhit (Ed.), Advances in meat processing technology. (pp. 121-168). Boca Raton, FL: CRC Press. doi: 10.1201/9781315371955

Chatterjee, A., Rodger, E. J., Morison, I. M., Eccles, M. R., & Stockwell, P. A. (2017). Tools and strategies for analysis of genome-wide and gene-specific DNA methylation patterns. In G. J. Seymour, M. P. Cullinan & N. C. K. Heng (Eds.), Oral biology: Molecular techniques and applications: Methods in molecular biology (Vol. 1537). (2nd ed.) (pp. 249-277). New York, NY: Springer. doi: 10.1007/978-1-4939-6685-1_15

Chatterjee, A., Rodger, E. J., Stockwell, P. A., Le Mée, G., & Morison, I. M. (2017). Generating multiple base-resolution DNA methylomes using reduced representation bisulfite sequencing. In G. J. Seymour, M. P. Cullinan & N. C. K. Heng (Eds.), Oral biology: Molecular techniques and applications: Methods in molecular biology (Vol. 1537). (2nd ed.) (pp. 279-298). New York, NY: Springer. doi: 10.1007/978-1-4939-6685-1_16

Chia, J., Burrow, K., Carne, A., McConnell, M., Samuelsson, L., Day, L., … Bekhit, A. E.-D. A. (2017). Minerals in sheep milk. In R. R. Watson, R. J. Collier & V. R. Preedy (Eds.), Nutrients in dairy and their implications for health and disease. (pp. 345-362). London, UK: Elsevier. doi: 10.1016/B978-0-12-809762-5.00027-9

Chisnall, M., & Macknight, R. (2017). Importance of Vitamin C in human health and disease. In M. A. Hossain, S. Munné-Bosch, D. J. Burritt, P. Diaz-Vivancos, M. Fujita & A. Lorence (Eds.), Ascorbic Acid in Plant Growth, Development and Stress Tolerance. (pp. 491-501). Cham, Switzerland: Springer. doi: 10.1007/978-3-319-74057-7

Cridge, A., Harrop, T., Lovegrove, M., Remnant, E., & Dearden, P. (2017). Nutrition and epigenetic change in insects: Evidence and implications. In H. Verlinden (Ed.), Advances in insect physiology (Vol. 53): Insect epigenetics. (pp. 31-54). London, UK: Academic Press. doi: 10.1016/bs.aiip.2017.06.001

Fitzgerald, R. P., & Legge, M. (2017). Ethics for embryologists. In R. M. Shaw (Ed.), Bioethics beyond altruism: Donating and transforming human biological materials. (pp. 141-164). Cham, Switzerland: Palgrave Macmillan. doi: 10.1007/978-3-319-55532-4_6

Peters, B., Aidley, J., Cadzow, M., Twell, D., & Brownfield, L. (2017). Identification of cis-regulatory modules that function in the male germline of flowering plants. In A. Schmidt (Ed.), Plant germline development: Methods and protocols: Methods in molecular biology (Vol. 1669). (pp. 275-293). Springer. doi: 10.1007/978-1-4939-7286-9_22

Twell, D., & Brownfield, L. (2017). Analysis of fluorescent reporter activity in the male germline during pollen development by confocal microscopy. In A. Schmidt (Ed.), Plant germline development: Methods and protocols: Methods in molecular biology (Vol. 1669). (pp. 67-75). Springer. doi: 10.1007/978-1-4939-7286-9_6

Weijman, J. F., Riedl, S. J., & Mace, P. D. (2017). Structural studies of ERK2 protein complexes. In G. Jimenez (Ed.), ERK signaling: Methods and protocols: Methods in molecular biology (Vol: 1487). (pp. 53-63). New York, NY: Springer. doi: 10.1007/978-1-4939-6424-6_4

Brownfield, L., & Twell, D. (2016). Plant Reproduction. In eLS. Chichester, UK: John Wiley & Sons. doi: 10.1002/9780470015902.a0002046.pub2

Reid, S., Chan, L. C. L., Matindoost, L., Pushparajan, C., & Visnovsky, G. (2016). Cell culture for production of insecticidal viruses. In T. R. Glare & M. E. Moran-Diez (Eds.), Microbial-based biopesticides: Methods and protocols: Methods in molecular biology (Vol. 1477). (pp. 95-117). New York: Springer. doi: 10.1007/978-1-4939-6367-6_9

Biswas, A., Fineran, P. C., & Brown, C. M. (2015). Computational detection of CRISPR/crRNA targets. In M. Lundgren, E. Charpentier & P. C. Fineran (Eds.), CRISPR: Methods in molecular biology (Vol. 1311). (pp. 77-89). New York, NY: Humana Press. doi: 10.1007/978-1-4939-2687-9_5

Empson, R. M., Tantirigama, M. L. S., Oswald, M. J., Hughes, S. M., & Knöpfel, T. (2015). Combined immunochemistry and live imaging of fluorescent protein expressing neurons in mouse brain. In A. Merighi & L. Lossi (Eds.), Immunocytochemistry and related techniques. (pp. 357-373). New York: Springer. doi: 10.1007/978-1-4939-2313-7_19

Poulter, R. T. M., & Butler, M. I. (2015). Tyrosine recombinase retrotransposons and transposons. In N. L. Craig, M. Chandler, M. Gellert, A. M. Lambowitz, P. A. Rice & S. B. Sandmeyer (Eds.), Mobile DNA III. (pp. 1271-1291). Washington, DC: ASM Press.

Copp, J. N., Hanson-Manful, P., Ackerley, D. F., & Patrick, W. M. (2014). Error-prone PCR and effective generation of gene variant libraries for directed evolution. In E. M. J. Gillam, J. N. Copp & D. F. Ackerley (Eds.), Directed evolution library creation: Methods and protocols. (2nd ed.) (pp. 3-22). New York: Springer. doi: 10.1007/978-1-4939-1053-3_16

Day, R., & Macknight, R. (2014). Screening for imprinted genes using high-resolution melting analysis of PCR amplicons. In C. Spillane & P. C. McKeown (Eds.), Plant epigentics and epigenomics: Methods and protocols. (pp. 71-83). Humana Press. doi: 10.1007/978-1-62703-773-0_5

Hill, R. E., & Eaton-Rye, J. J. (2014). Plasmid Construction by SLIC or Sequence and Ligation-Independent Cloning. In S. Valla & R. Lale (Eds.), DNA cloning and assembly methods: Methods in molecular biology (Vol. 1116). (pp. 25-36). New York: Humana. doi: 10.1007/978-1-62703-764-8_2

Mace, P. D., Riedl, S. J., & Salvesen, G. S. (2014). Caspase enzymology and activation mechanisms. In A. Ashkenasi, J. Yuan & J. A. Wells (Eds.), Methods in enzymology: Regulated cell death Part A: Apoptotic mechanisms (Vol.544). (pp. 161-178). San Diego, CA: Academic Press. doi: 10.1016/b978-0-12-417158-9.00007-8

Middleton, A. J., Budhidarmo, R., & Day, C. L. (2014). Use of E2~ubiquitin conjugates for the characterization of ubiquitin transfer by RING E3 ligases such as the inhibitor of apoptosis proteins. In A. Ashkenazi, J. A. Wells & J. Yuan (Eds.), Methods in enzymology (Vol. 545). (pp. 243-263). San Diego, CA: Elsevier. doi: 10.1016/B978-0-12-801430-1.00010-X

Middleton, A. J., Vanderbeld, B., Bredow, M., Tomalty, H., Davies, P. L., & Walker, V. K. (2014). Isolation and characterization of ice-binding proteins from higher plants. In D. K. Hincha & E. Zuther (Eds.), Plant cold acclimation: Methods and Protocols (Methods in Molecular Biology: Vol. 1166). (pp. 255-277). New York: Springer. doi: 10.1007/978-1-4939-0844-8_19

Najafpour, M. M., Sedigh, D. J., Eaton-Rye, J. J., & Allakhverdiev, S. I. (2014). The water-oxidizing complex in Photosystem II. In S. I. Allakhverdiev, A. B. Rubin & V. A. Shuvalov (Eds.), Contemporary problems of photosynthesis (Vol. 1). (pp. 325-341). Moscow, Russia: Izhevsk Institute of Computer Science.

Osborne, A. J., Duncan, E. J., Cridge, A. G., & Dearden, P. K. (2014). Epigenetics and the maternal germline. In T. Tollefsbol (Ed.), Transgenerational epigenetics: Evidence and debate. (pp. 27-41). London, UK: Academic Press. doi: 10.1016/B978-0-12-405944-3.00004-0

Patrick, W. M., & Gerth, M. L. (2014). ITCHY: Incremental Truncation for the Creation of Hybrid Enzymes. In E. M. J. Gillam, J. N. Copp & D. F. Ackerley (Eds.), Directed evolution library creation: Methods and protocols. (2nd ed.) (pp. 225-244). New York: Springer. doi: 10.1007/978-1-4939-1053-3_16

Sharpe, M. L., Hastings, J. W., & Krause, K. L. (2014). Luciferases and light-emitting accessory proteins: Structural biology. In eLS. Chichester, UK: John Wiley & Sons. doi: 10.1002/9780470015902.a0003064.pub2

Stevens, S. G., & Brown, C. M. (2014). Bioinformatic methods to discover Cis-regulatory elements in mRNAs. In N. K. Kasabov (Ed.), Springer handbook of bio-/neuro-informatics. (pp. 151-169). Dordrecht, The Netherlands: Springer. doi: 10.1007/978-3-642-30574-0_10

Bekhit, A. E., Hopkins, D. L., Farouk, M. M., & Carne, A. (2013). Interventions to improve the tenderness of fresh meat: A future prospect for camel meat research. In I. T. Kadim, O. Mahgoub, B. Faye & M. Farouk (Eds.), Camel meat and meat products. (pp. 153-185). Oxford, UK: CABI.

Hanson-Manful, P., & Patrick, W. M. (2013). Construction and analysis of randomized protein-encoding libraries using error-prone PCR. In J. A. Gerrard (Ed.), Protein nanotechnology: Protocols, instrumentation, and applications. (2nd ed.) (pp. 251-267). Humana Press. doi: 10.1007/978-1-62703-354-1-15

Merriman, T. R., & Flynn, T. J. (2013). Molecular genetics of hyperuricaemia and gout. In eLS. Chichester: John Wiley & Sons. doi: 10.1002/9780470015902.a0025153

Merriman, T. R., & McKinney, C. (2013). An update on the genetic causes of hyperuricemia and gout. In N. Dalbeth, F. Perez-Ruiz & N. Schlesinger (Eds.), Gout. (pp. 54-69). London, UK: Future Medicine. doi: 10.2217/ebo.12.256

Picard, K., Lee, R., Hellens, R., & Macknight, R. (2013). Transient gene expression in Medicago truncatula leaves via agroinfiltration. In R. J. Rose (Ed.), Legume genomics: Methods and protocols: Methods in molecular biology (Vol. 1069). (pp. 215-226). New York: Springer. doi: 10.1007/978-1-62703-613-9_15

Macknight, R. C., Herridge, R. P., & Day, R. C. (2012). Using transcriptomics to reveal gene networks of seed development in Arabidopsis. In G. K. Agrawal & R. Rakwal (Eds.), Seed development: OMICS technologies toward Improvement of seed quality and crop yield. (pp. 99-110). Dordrecht, The Netherlands: Springer. doi: 10.1007/978-94-007-4749-4_6

McConnell, I. L., Eaton-Rye, J. J., & van Rensen, J. J. S. (2012). Regulation of Photosystem II electron transport by bicarbonate. In J. J. Eaton-Rye, B. C. Tripathy & T. D. Sharkey (Eds.), Photosynthesis: Plastid biology, energy conversion and carbon assimilation. (pp. 475-500). New York: Springer. doi: 10.1007/978-94-007-1579-0

Collins, L. J., Schönfeld, B., & Chen, X. S. (2011). The epigenetics of non-coding RNA. In T. Tollefsbol (Ed.), Handbook of epigenetics: The new molecular and medical genetics. (pp. 49-61). London: Academic Press. doi: 10.1016/B978-0-12-375709-8.00004-6

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Yang, Z., Guarracino, A., Biggs, P. J., Black, M. A., Ismail, N., Wold, J. R., Merriman, T. R., … de Ligt, J. (2024). Pangenome graphs in infectious disease: A comprehensive genetic variation analysis of Neisseria meningitidis leveraging Oxford Nanopore long reads. In P. J. Dias, S. Tulasi & D. Verma (Eds.), Microbial comparative genomics and pangenomics: New tools, approaches and insights into gene and genome evolution. Lausanne, Switzerland: Frontiers Media. doi: 10.3389/978-2-8325-5650-4

Tate, W. P., & Marshall, C. J. (2018). Post-dormancy transcription and translation in the brine shrimp. In R. A. Browne, P. Sorgeloos & C. N. A. Trotman (Eds.), Artemia biology. (pp. 21-36). Boca Raton, FL: Taylor & Francis. doi: 10.1201/9781351069892

Eaton-Rye, J. J. (2012). Contributions of Govindjee, 1970-1999. In J. J. Eaton-Rye, B. C. Tripathy & T. D. Sharkey (Eds.), Photosynthesis: Plastid biology, energy conversion and carbon assimilation. New York: Springer. doi: 10.1007/978-94-007-1579-0

Hastings, J. W., & Krause, K. L. (2007). Luciferases and light-emitting accessory proteins: Structural biology. In Encyclopedia of Life Sciences. New York: John Wiley & Sons.

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Alvarez-Costes, S., Baker, C. S., Constantine, R., Carroll, E. L., Guhlin, J., Dutoit, L., Ferreira, S., … Gemmell, N. J., Gillum, J., … Rayment, W., … Te Aikā, B., Urban, L., & Alexander, A. (2025). Leveraging synteny to generate reference genomes for conservation: Assembling the genomes of Hector's and Māui dolphins. Molecular Ecology Resources, e14109. Advance online publication. doi: 10.1111/1755-0998.14109

Bicknell, L. S., Hirschhorn, J. N., & Savarirayan, R. (2025). The genetic basis of human height. Nature Reviews Genetics. Advance online publication. doi: 10.1038/s41576-025-00834-1

Burgess, A. E., Loughran, T. A., Turk, L. S., Nyvall, H. G., Dunlop, J. L., Jamieson, S. A., Curry, J. R., … Mace, P. D. (2025). DET1 dynamics underlie cooperative ubiquitination by CRL4DET1-COP1 complexes. Science Advances, 11(9), eadq4187. doi: 10.1126/sciadv.adq4187

Cuinat, S., Chatron, N., Petit, F., Brunelle, P., Dincuff, E., Aubert Mucca, M., … Mulligan, M., Bicknell, L. S., … Putoux, A. (2025). XRCC4-related microcephalic primordial dwarfism: Description of a clinical series of 7 cases, phenotype expansion and new diagnostic approaches. European Journal of Human Genetics. Advance online publication. doi: 10.1038/s41431-025-01821-0

Dainty, K. R., Duyvestyn, J. M., & Flores, H. A. (2025). Targeted knockdown of in vitro candidates does not alter Wolbachia density in vivo. Journal of Invertebrate Pathology, 211, 108346. doi: 10.1016/j.jip.2025.108346

Dunnet, M. J., Morison, I. M., Bond, D. M., & Hore, T. A. (2025). High-throughput, pan-leukocyte biomarkers for the detection of inflammation in human breastmilk and stool. Frontiers in Epigenetics & Epigenomics, 3, 535838. doi: 10.3389/freae.2025.1535838

Gardner, P. P. (2025). A bioinformatician, computer scientist, and geneticist lead bioinformatic tool development: Which one is better? Bioinformatics Advances, vbaf011. Advance online publication. doi: 10.1093/bioadv/vbaf011

Greenhough, H., Vignier, J., Smith, K. F., Brown, C. M., Kenny, N. J., & Rolton, A. (2025). Multi-stressor dynamics: Effects of marine heatwave stress and harmful algal blooms on juvenile mussel (Perna canaliculus) survival and physiology. Science of the Total Environment, 964, 178590. doi: 10.1016/j.scitotenv.2025.178590

Kanokruangrong, S., Kebede, B., Carne, A., Stewart, I., & Bekhit, A. E.-D. A. (2025). Metabolomic investigation of fresh beef, lamb and venison using nuclear magnetic resonance spectroscopy in relation to colour stability. Food Chemistry, 463, 141447. doi: 10.1016/j.foodchem.2024.141447

Khosravi, M., Allakhverdiev, S. I., Eaton-Rye, J. J., Hołyńska, M., Aro, E.-M., Shen, J.-R., & Najafpour, M. M. (2025). Fundamental properties, characterization techniques, and applications for photo(electro) catalysis: From nanosized manganese oxides to manganese coordination compounds [Review]. Coordination Chemistry Reviews, 527, 216396. doi: 10.1016/j.ccr.2024.216396

King-Hudson, T.-R., Pearson, A. G., Dunstan-Harrison, C., Powell, M. T., Magon, N. J., Edwards, T. S., Paton, L. N., … Kettle, A. J., Pearson, J. F., Kokaua, J., … Theodore, R., Ramrakha, S., … Moffitt, T. E., Ledgerwood, E. C., & Hampton, M. B. (2025). Biomarkers of oxidative and mitochondrial stress are associated with accelerated pace of aging at midlife in a birth cohort. Journals of Gerontology Series A. Advance online publication. doi: 10.1093/gerona/glaf105

Krittaphol, W., Martin, L. W., Lamont, I. L., & Walker, G. F. (2025). A sensitive reverse-phase ultra performance liquid chromatography-tandem mass spectrometry method for the determination of tobramycin in Pseudomonas aeruginosa cell lysate. Journal of Pharmaceutical & Biomedical Analysis, 260, 116743. doi: 10.1016/j.jpba.2025.116743

Lim, C. S., Gibbon, A. K., Nguyen, A. T. T., Chieng, G. S. W., & Brown, C. M. (2025). RIBOSS detects novel translational events by combining long- and short-read transcriptome and translatome profiling. Briefings in Bioinformatics, 26(2), bbaf164. doi: 10.1093/bib/bbaf164

McLaughlin, G., & Dearden, P. (2025). Evaluation of candidate reference genes for gene expression research in Vespula vulgaris. Frontiers in Insect Science, 5, 1495626. doi: 10.3389/finsc.2025.1495626

Mousazadeh, Y., Zand, Z., Akbari, N., Eaton-Rye, J. J., Shen, J.-R., Allakhverdiev, S. I., & Najafpour, M. M. (2025). Manganese-based molecular systems in catalytic oxygen-evolution reaction: The role of nanoparticles, challenges, and opportunities. Coordination Chemistry Reviews, 541, 216805. doi: 10.1016/j.ccr.2025.216805

Rossig, C., Paluda, A., Chen, R., Middleton, A. J., & Day, C. L. (2025). Arkadia and Ark2C promote substrate ubiquitylation with multiple E2 enzymes. Journal of Molecular Biology. Advance online publication. doi: 10.1016/j.jmb.2025.169259

Rye, C. E., Puketapu-Watson, H., Wihongi, H., Te Aika, B., Macartney-Coxson, D., de Ligt, J., … Robertson, S. P., Halliday, B. J., Goodin, E., Markie, D. M., Lamont, A., & Wilcox, P. (2025). Rakeiora Genomics Platform: A pathfinder for genomic medicine research in Aotearoa New Zealand. Journal of the Royal Society of New Zealand. Advance online publication. doi: 10.1080/03036758.2025.2469626

Salamanca-Díaz, D. A., Horkan, H. R., García-Castro, H., Emili, E., Salinas-Saavedra, M., Pérez-Posada, A., … Kenny, N. J., … Solana, J. (2025). The Hydractinia cell atlas reveals cellular and molecular principles of cnidarian coloniality. Nature Communications, 16, 2121. doi: 10.1038/s41467-025-57168-z

Salvesen, H. A., & Dearden, P. K. (2025). Genome editing in hymenoptera. Insect Biochemistry & Molecular Biology, 180, 104300. doi: 10.1016/j.ibmb.2025.104300

Te Aika, B., Liggins, L., Rye, C., Perkins, E. O., Huh, J., Brauning, R., Godfery, T., & Black, M. A. (2025). Aotearoa genomic data repository: An āhuru mōwai for taonga species sequencing data. Molecular Ecology Resources, 25, e13866. doi: 10.1111/1755-0998.13866

Toomata, Z. L., Jiang, Y., Yeu, R. Q., Brandon, R., Tweedie-Cullen, R. Y., Nehren, N., … Leask, M., Merriman, T. R., Paul, R., Merry, T. L., Shepherd, P. R., & Murphy, R. (2025). Reducing weight gain with pioglitazone vs vildagliptin in CREBRF rs373863828 A-allele carriers: Insights form the WORTH trial. Diabetes, Metabolic Syndrome & Obesity, 18, 1255-1262. doi: 10.2147/dmso.S500336

Upadhyay, T., Woods, E. C., Dela Ahator, S., Julin, K., Faucher, F. F., Uddin, M. J., … Fellner, M., & Bogyo, M. (2025). Identification of covalent inhibitors of Staphylococcus aureus serine hydrolases important for virulence and biofilm formation. Nature Communications, 16, 5046. doi: 10.1038/s41467-025-60367-3

Wang, S., Woods, E. C., Jo, J., Zhu, J., Hansel-Harris, A., Holcomb, M., … Fellner, M., … Bogyo, M. (2025). An mRNA display approach for covalent targeting of a Staphylococcus aureus virulence factor. Journal of the American Chemical Society. Advance online publication. doi: 10.1021/jacs.4c15713

Warring, S., Sisson, H. M., Randall, G., Grimon, D., Dams, D., Gutiérrez, D., Fellner, M., Fagerlund, R. D., … Jackson, S. A., & Fineran, P. C. (2025). Engineering an antimicrobial chimeric endolysin that targets the phytopathogen Pseudomonas syringae pv. actinidiae. Journal of Biological Chemistry. Advance online publication. doi: 10.1016/j.jbc.2025.110224

West, A. G., Digby, A., Kākāpō Recovery Team, Kākāpō Aspergillosis Research Consortium, including Dearden, P. K., Gemmell, N. J., Guhlin, J., Le Lec, M., Quinones Mateu, M., and Taylor, M. D. (2025). The mycobiota of faeces from the critically endangered kākāpō and associated nest litter. New Zealand Journal of Zoology, 52(2), 171-192. doi: 10.1080/03014223.2023.2170428

Xu, C., Feng, J., Zhou, Y., Ren, H., Pan, X., Chen, S., … Lamont, I. L., Pletzer, D., & Wu, W. (2025). Azithromycin represses evolution of ceftazidime/avibactam resistance by translational repression of rpoS in Pseudomonas aeruginosa. Journal of Bacteriology. Advance online publication. doi: 10.1128/jb.00552-24

Achilleos, K., Smith, A. M., Kenny, N. J., & Brown, C. M. (2024). A new transcriptome resource for Cellaria immersa (Phylum: Bryozoa) reveals candidate genes and proteins related to biomineralization. Frontiers in Marine Science. Advance online publication. doi: 10.3389/fmars.2024.1389708

Álvarez-Campos, P., García-Castro, H., Emili, E., Pérez-Posada, A., del Olmo, I., Peron, S., … Kenny, N. J., … Solana, J. (2024). Annelid adult cell type diversity and their pluripotent cellular origins. Nature Communications, 15, 3194. doi: 10.1038/s41467-024-47401-6

Arshad, F., & Eaton-Rye, J. J. (2024). Indirect interactions involving the PsbM or PsbT subunits and the PsbO, PsbU and PsbV proteins stabilize assembly and activity of Photosystem II in Synechocystis sp. PCC 6803. Photosynthesis Research. Advance online publication. doi: 10.1007/s11120-024-01091-9

Barzak, F. M., Lu, A., Geltzeiler, A. R., Ledgerwood, E. C., Chung, W. K., & Day, C. L. (2024). A novel RNF125 variant associated with Tenorio syndrome alters ubiquitin chain binding. Clinical Genetics, 105, 254-261. doi: 10.1111/cge.14457

Bilton, T. P., Sharma, S. K., Schofield, M. R., Black, M. A., Jacobs, J. M. E., Bryan, G. J., & Dodds, K. G. (2024). Construction of relatedness matrices in autopolyploid populations using low-depth high-throughput sequencing data. Theoretical & Applied Genetics, 137, 64. doi: 10.1007/s00122-024-04568-2

Biswas, S., Khaing, E. P., Zhong, V., & Eaton-Rye, J. J. (2024). Arg24 and 26 of the D2 protein are important for photosystem II assembly and plastoquinol exchange in Synechocystis sp. PCC 6803. Biochimica et Biophysica Acta: Bioenergetics, 1865(4), 149150. doi: 10.1016/j.bbabio.2024.149150

Brown, T. J., Vass, I., Summerfield, T. C., & Eaton-Rye, J. J. (2024). Phe265 of the D1 protein is required to stabilize plastoquinone binding in the QB-binding site of photosystem II in Synechocystis sp. PCC 6803. Biochemical & Biophysical Research Communications, 733, 150692. doi: 10.1016/j.bbrc.2024.150692

Castañeda-Casasola, C. C., Nieto-Jacobo, M. F., Soares, A., Padilla-Padilla, E. A., Anducho-Reyes, M. A., Brown, C., … Mendoza-Mendoza, A. (2024). Unveiling a microexon switch: Novel regulation of the activities of sugar assimilation and plant-cell-wall-degrading xylanases and cellulases by Xlr2 in Trichoderma virens. International Journal of Molecular Sciences, 25, 5172. doi: 10.3390/ijms25105172

Chin, T. C., Wilbanks, S. M., & Ledgerwood, E. C. (2024). Altered conformational dynamics contribute to species-specific effects of cytochrome c mutations on caspase activation. Journal of Biological Inorganic Chemistry. Advance online publication. doi: 10.1007/s00775-024-02044-2

Chinzowu, T., Chyou, T.-y., & Nishtala, P. S. (2024). Antibiotic-associated acute kidney injury among older adults: A case-crossover study. Clinical Drug Investigation, 44, 131-139. doi: 10.1007/s40261-023-01339-7

Cullen, G., Delargy, E., & Dearden, P. K. (2024). Development of germline progenitors in larval queen honeybee ovaries. Biology Open, 13(bio060511). doi: 10.1242/bio.060511

Currie, M. J., Davies, J. S., Scalise, M., Gulati, A., Wright, J. D., Newton-Vesty, M. C., … Mace, P. D., … North, R. A. (2024). Structural and biophysical analysis of a Haemophilus influenzae tripartite ATP-independent periplasmic (TRAP) transporter. eLIFE, 13, RP92307. doi: 10.7554/eLife.92307

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Dunstan-Harrison, C., Morison, I. M., & Ledgerwood, E. C. (2024). Inherited thrombocytopenia associated with a variant in the FLI1 binding site in the 5' UTR of ANKRD26. Clinical Genetics. Advance online publication. doi: 10.1111/cge.14547

Faiz, M., Kalev-Zylinska, M. L., Dunstan-Harrison, C., Singleton, D. C., Hay, M. P., & Ledgerwood, E. C. (2024). Megakaryocyte maturation involves activation of the adaptive unfolded protein response. Genes to Cells. Advance online publication. doi: 10.1111/gtc.13151

Fellner, M., Randall, G., Bitac, I. R. C. G., Warrender, A. K., Sethi, A., Jelinek, R., & Kass, I. (2024). Similar but distinct: Biochemical characterization of the Staphylococcus aureus serine hydrolases FphH and FphI. Proteins. Advance online publication. doi: 10.1002/prot.26785

Forsman, J. A., Sheridan, K. J., Singh, H., Brown, T. J., Vass, I., Summerfield, T. C., & Eaton-Rye, J. J. (2024). The Psb27 assembly factor and histidine-252 of the D1 protein modify energy transfer to photosystem II in Synechocystis sp. PCC 6803. Physiologia Plantarum, 176, e14154. doi: 10.1111/ppl.14154

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Garcia-Pelaez, J., Dias, A., Guilford, P., & Oliveira, C. (2024). High frequency of lobular breast cancer in CDH1 germline carriers supports update of clinical guidelines for CDH1 testing and pathological characterization. European Journal of Human Genetics, 32(Suppl. 2), P18.059.B. doi: 10.1038/s41431-024-01734-4

Garelja, M. L., Alexander, T. I., Bennie, A., Nimick, M., Petersen, J., Walker, C. S., & Hay, D. L. (2024). Pharmacological characterisation of erenumab, Aimovig, at two calcitonin gene-related peptide responsive receptors. British Journal of Pharmacology, 181, 142-161. doi: 10.1111/bph.16218

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Greenhough, H., Smith, K. F., Kenny, N. J., & Rolton, A. (2024). Effects of the toxic dinoflagellate, Alexandrium pacificum, on the marine diatom, Chaetoceros muelleri, and mussel (Perna canaliculus) sperm and hemocytes. Marine Environmental Research, 199, 106630. doi: 10.1016/j.marenvres.2024.106630

Harvey, J. C., Cambridge, L. M., Ellen, C. W., Colonval, M., Hazlett, J. A., Newell, J., … Guilford, P. J. (2024). Analytical validation of Cxbladder detect, triage, and monitor: Assays for detection and management of urothelial carcinoma. Diagnostics, 14, 2061. doi: 10.3390/diagnostics14182061

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Li, S., Carne, A., & Bekhit, A. E.-D. A. (2024). Investigation of antioxidant activity of protein hydrolysates from New Zealand commercial low-grade fish roes. Marine Drugs, 22, 364. doi: 10.3390/md22080364

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McCallum-Loudeac, J., Moody, E., Williams, J., Johnstone, G., Sircombe, K. J., Clarkson, A. N., & Wilson, M. J. (2024). Deletion of a conserved genomic region associated with adolescent idiopathic scoliosis leads to vertebral rotation in mice. Human Molecular Genetics. Advance online publication. doi: 10.1093/hmg/ddae011

McDonald, K. O., Lyons, N. M. A., Gray, L. K. C., Xu, J. B., Schoderboeck, L., Hughes, S. M., & Basak, I. (2024). Transcription factor-mediated generation of dopaminergic neurons from human iPSCs: A comparison of methods. Cells, 13(12), 1016. doi: 10.3390/cells13121016

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Sun, M., Vazquez, A. I., Reynolds, R. J., Singh, J. A., Reeves, M., Merriman, T. R., … de los Campos, G. (2018). Untangling the complex relationships between incident gout risk, serum urate, and its comorbidities. Arthritis Research & Therapy, 20(1), 90. doi: 10.1186/s13075-018-1558-3

Talaroa, G., Harbison-Price, N., Ferguson, S. A., Carter, G. P., Williamson, D. A., Macknight, R. C., Cook, G. M., & Helkal, A. (2018). Complete genome sequence of a New Zealand isolate of the bovine pathogen Streptococcus uberis. Genome Announcements, 6(9), e00119-18. doi: 10.1128/genomeA.00119-18

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Taylor, E. S., McCall, J. L., Shen, S., Girardin, A., Munro, F. M., Black, M. A., Ward-Hartstonge, K. A., & Kemp, R. A. (2018). Prognostic roles for IL-2-producing and CD69+ T cell subsets in colorectal cancer patients. International Journal of Cancer, 143(8), 2008-2016. doi: 10.1002/ijc.31598

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Wai, D. C., Szyszka, T. N., Campbell, A. E., Kwong, C., Wilkinson-White, L. E., Silva, A. P. G., … Chalmers, J. N., Patrick, W. M., … Mackay, J. P. (2018). The BRD3 ET domain recognizes a short peptide motif through a mechanism that is conserved across chromatin remodelers and transcriptional regulators. Journal of Biological Chemistry, 293, 7160-7175. doi: 10.1074/jbc.RA117.000678

Wan Taib, W. R., Adanan, M., Yunus, N. M., Lin, T. H., Ghazali, W. S. W., Phipps-Green, A. J., & Merriman, T. R. (2018). Association of solute carrier family 2, member 9 (SLC2A9) genetic variant rs3733591 with gout in a Malay sample set. Medical Journal of Malaysia, 73(5), 307-310.

Watkins, O. C., Sharpe, M. L., Perry, N. B., & Krause, K. L. (2018). New Zealand glowworm (Arachnocampa luminosa) bioluminescence is produced by a firefly-like luciferase but an entirely new luciferin. Scientific Reports, 8(3278). doi: 10.1038/s41598-018-21298-w

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Wright, D. F. B., Dalbeth, N., Phipps-Green, A. J., Merriman, T. R., Barclay, M. L., Drake, J., … Stamp, L. K. (2018). The impact of diuretic use and ABCG2 genotype on the predictive performance of a published allopurinol dosing tool. British Journal of Clinical Pharmacology, 84(5), 937-943. doi: 10.1111/bcp.13516

Wu, R., Wang, T., Allan, A. C., Macknight, R. C., & Varkonyi-Gasic, E. (2018). Overexpression of both AcSVP1 and AcSVP4 delays budbreak in kiwifruit A. chinensis var. deliciosa, but only AcSVP1 delays flowering in model plants. Environmental & Experimental Botany, 153, 262-270. doi: 10.1016/j.envexpbot.2018.06.010

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Al-Ani, A. H., Antoun, J. S., Thomson, W. M., Merriman, T. R., & Farella, M. (2017). Maternal smoking during pregnancy is associated with offspring hypodontia. Journal of Dental Research, 96(9), 1014-1019. doi: 10.1177/0022034517711156

Antoun, J. S., Thomson, W. M., Merriman, T. R., & Farella, M. (2017). Self-reported oral behaviour habits in hyperdivergent and normodivergent facial types. Journal of Oral Rehabilitation, 44(1), 16-21. doi: 10.1111/joor.12452

Antoun, J. S., Thomson, W. M., Merriman, T. R., Rongo, R., & Farella, M. (2017). Impact of skeletal divergence on oral health-related quality of life and self-reported jaw function. Korean Journal of Orthodontics, 47(3), 186-194. doi: 10.4041/kjod.2017.47.3.186

Ariazi, E. A., Taylor, J. C., Black, M. A., Nicolas, E., Slifker, M. J., Azzam, D. J., & Boyd, J. (2017). A new role for ERα: Silencing via DNA methylation of basal, stem cell, and EMT genes. Molecular Cancer Research, 15(2). doi: 10.1158/1541-7786.mcr-16-0283

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Bougen-Zhukov, N., Loh, S. Y., Lee, H. K., & Loo, L.-H. (2017). Large-scale image-based screening and profiling of cellular phenotypes. Cytometry Part A, 91(2), 115-125. doi: 10.1002/cyto.a.22909

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Cadzow, M., Merriman, T. R., & Dalbeth, N. (2017). Performance of gout definitions for genetic epidemiological studies: Analysis of UK Biobank. Arthritis Research & Therapy, 19(1), 181. doi: 10.1186/s13075-017-1390-1

Chatterjee, A., Macaulay, E. C., Ahn, A., Ludgate, J. L., Stockwell, P. A., Weeks, R. J., Parry, M. F., Foster, T. J., … Eccles, M. R., & Morison, I. M. (2017). Comparative assessment of DNA methylation patterns between reduced representation bisulfite sequencing and Sequenom EpiTyper methylation analysis. Epigenomics, 9(6), 823-832. doi: 10.2217/epi-2016-0176

Chatterjee, A., Stockwell, P. A., Ahn, A., Rodger, E. J., Leichter, A. L., & Eccles, M. R. (2017). Genome-wide methylation sequencing of paired primary and metastatic cell lines identifies common DNA methylation changes and a role for EBF3 as a candidate epigenetic driver of melanoma metastasis. Oncotarget, 8(4), 6085-6101. doi: 10.18632/oncotarget.14042

Christensen, E. M., Patel, S. M., Korasick, D. A., Campbell, A. C., Krause, K. L., Becker, D. F., & Tanner, J. J. (2017). Resolving the cofactor-binding site in the proline biosynthetic enzyme human pyrroline-5-carboxylate reductase 1. Journal of Biological Chemistry, 292(17), 7233-7243. doi: 10.1074/jbc.M117.780288

Chung, I.-M., Rahuman, A. A., Marimuthu, S., Kirthi, A. V., Anbarasan, K., Parthasarathy, P., & Rajakumar, G. (2017). Green synthesis of copper nanoparticles using Eclipta prostrata leaves extract and their antioxidant and cytotoxic activities. Experimental & Therapeutic Medicine, 14(1), 18-24. doi: 10.3892/etm.2017.4466

Clare, A. J., Wicky, H. E., Empson, R. M., & Hughes, S. M. (2017). RNA-sequencing analysis reveals a regulatory role for transcription factor Fezf2 in the mature motor cortex. Frontiers in Molecular Neuroscience, 10, 283. doi: 10.3389/fnmol.2017.00283

Clark, A. L., King, C. L., Buckley, H. R., Collins, C. J., Dhavale, N., Elliott, G. E., Gosling, A., Halcrow, S. E., … Matisoo-Smith, E., … Tromp, M., Ward, S., & West, K. (2017). Biological anthropology in the indo-pacific region: New approaches to age-old questions. Journal of Indo-Pacific Archaeology, 41, 78-94.

Cleophas, M. C., Joosten, L. A., Stamp, L. K., Dalbeth, N., Woodward, O. M., & Merriman, T. R. (2017). ABCG2 polymorphisms in gout: Insights into disease susceptibility and treatment approaches. Pharmacogenomics & Personalized Medicine, 10, 129-142. doi: 10.2147/pgpm.s105854

Cridge, A. G., Lovegrove, M. R., Skelly, J. G., Taylor, S. E., Petersen, G. E. L., Cameron, R. C., & Dearden, P. K. (2017). The honeybee as a model insect for developmental genetics. Genesis, 55(5), e23019. doi: 10.1002/dvg.23019

Dalbeth, N., Allan, J., Gamble, G. D., Phipps-Green, A., Flynn, T. J., Mihov, B., … Stamp, L. K., & Merriman, T. R. (2017). Influence of genetic variants on renal uric acid handling in response to frusemide: An acute intervention study. RMD Open, 3(1), e000424. doi: 10.1136/rmdopen-2016-000424

De Smit, E., Clarke, L., Sanfilippo, P. G., Merriman, T. R., Brown, M. A., Hill, C. L., … Giant Cell Arteritis Pathology Network. (2017). Geo-epidemiology of temporal artery biopsy-positive giant cell arteritis in Australia and New Zealand: Is there a seasonal influence? RMD Open, 3(2), e000531. doi: 10.1136/rmdopen-2017-000531

Edgar, R. J., Hampton, G. E., Casas Garcia, G. P., Maher, M. J., Perugini, M. A., Ackerley, D. F., & Lamont, I. L. (2017). Integrated activities of two alternative sigma factors coordinate iron acquisition and uptake by Pseudomonas aeruginosa. Molecular Microbiology, 106(6), 891-904. doi: 10.1111/mmi.13855

Ellison-Loschmann, L., Sporle, A., Corbin, M., Cheng, S., Harawira, P., Gray, M., … Guilford, P., … Pearce, N. (2017). Risk of stomach cancer in Aotearoa/New Zealand: A Māori population based case-control study. PLoS ONE, 12(7), e0181581. doi: 10.1371/journal.pone.0181581

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Filipčík, P., Curry, J. R., & Mace, P. D. (2017). When worlds collide: Mechanisms at the interface between phosphorylation and ubiquitination. Journal of Molecular Biology, 429(8), 1097-1113. doi: 10.1016/j.jmb.2017.02.011

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Fukuzawa, R., Anaka, M. R., Morison, I. M., & Reeve, A. E. (2017). The developmental programme for genesis of the entire kidney is recapitulated in Wilms tumour. PLoS ONE, 12(10), e0186333. doi: 10.1371/journal.pone.0186333

Gerth, M. L., Liu, Y., Jiao, W., Zhang, X.-X., Baker, E. N., Lott, J. S., … Johnston, J. M. (2017). Crystal structure of a bicupin protein HutD involved in histidine utilization in Pseudomonas. Proteins, 85(8), 1580-1588. doi: 10.1002/prot.25303

Haddadian, Z., Eyres, G. T., Carne, A., Everett, D. W., & Bremer, P. (2017). Impact of different milk fat globule membrane preparations on protein composition, xanthine oxidase activity, and redox potential. International Dairy Journal, 64, 14-21. doi: 10.1016/j.idairyj.2016.09.006

He, W., Phipps-Green, A., Stamp, L. K., Merriman, T. R., & Dalbeth, N. (2017). Population-specific association between ABCG2 variants and tophaceous disease in people with gout. Arthritis Research & Therapy, 19(1), 43. doi: 10.1186/s13075-017-1254-8

Higashino, T., Takada, T., Nakaoka, H., Toyoda, Y., Stiburkova, B., Miyata, H., … Merriman, T. R., … Matsuo, H. (2017). Multiple common and rare variants of ABCG2 cause gout. RMD Open, 3(2), e000464. doi: 10.1136/rmdopen-2017-000464

Hilliam, Y., Moore, M. P., Lamont, I. L., Bilton, D., Haworth, C. S., Foweraker, J., … Winstanley, C. (2017). Pseudomonas aeruginosa adaptation and diversification in the non-cystic fibrosis bronchiectasis lung. European Respiratory Journal, 49(4), 1602108. doi: 10.1183/13993003.02108-2016

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Jackson, S. A., & Eaton-Rye, J. J. (2017). Modular growth vessels for the cultivation of the cyanobacterium Synechococcus sp. PCC 7002. New Zealand Journal of Botany, 55(1), 14-24. doi: 10.1080/0028825X.2016.1231123

Jones, G. T., Tromp, G., Kuivaniemi, H., Gretarsdottir, S., Baas, A. F., Giusti, B., … Phillips, L. V., Williams, M. J. A., Wei, W., … Thomson, I. A., Krysa, J., Hill, G. B., Roake, J., Merriman, T. R., … van Rij, A., … Bown, M. J. (2017). Meta-analysis of genome-wide association studies for abdominal aortic aneurysm identifies four new disease-specific risk loci. Circulation Research, 120, 341-353. doi: 10.1161/circresaha.116.308765

Kavalieris, L., O'Sullivan, P., Frampton, C., Guilford, P., Darling, D., Jacobson, E., … Lotan, Y. (2017). Performance characteristics of a multigene urine biomarker test for monitoring for recurrent urothelial carcinoma in a multicenter study. Journal of Urology, 197(6), 1419-1426. doi: 10.1016/j.juro.2016.12.010

Kelly, S. T., & Spencer, H. G. (2017). Population-genetic models of sex-limited genomic imprinting. Theoretical Population Biology, 115, 35-44. doi: 10.1016/j.tpb.2017.03.004

Khan, A. A., Randhawa, M. A., Carne, A., Ahmed, I. A. M., Barr, D., Reid, M., & Bekhit, A. E.-D. A. (2017). Effect of low and high pulsed electric field on the quality and nutritional minerals in cold boned beef M. longissimus et lumborum. Innovative Food Science & Emerging Technologies, 41, 135-143. doi: 10.1016/j.ifset.2017.03.002

Lamping, E., Zhu, J.-y., Niimi, M., & Cannon, R. D. (2017). Role of ectopic gene conversion in the evolution of a Candida krusei pleiotropic drug resistance transporter family. Genetics, 205(4), 1619-1639. doi: 10.1534/genetics.116.194811

Lawrence, S. A., Armstrong, C. B., Patrick, W. M., & Gerth, M. L. (2017). High-throughput chemical screening identifies compounds that inhibit different stages of the Phytophthora agathidicida and Phytophthora cinnamomi life cycles. Frontiers in Microbiology, 8, 1340. doi: 10.3389/fmicb.2017.01340

Lawrence, S. A., Floge, S. A., Davy, J. E., Davy, S. K., & Wilson, W. H. (2017). Exploratory analysis on Symbiodinium transcriptomes reveals potential latent infection by large dsDNA viruses. Environmental Microbiology, 19(10), 3909-3919. doi: 10.1111/1462-2920.13782

Lechtenberg, B. C., Mace, P. D., Sessions, E. H., Williamson, R., Stalder, R., Wallez, Y., … Pasquale, E. B. (2017). Structure-guided strategy for the development of potent bivalent ERK inhibitors. ACS Medicinal Chemistry Letters, 8(7), 726-731. doi: 10.1021/acsmedchemlett.7b00127

Ledgerwood, E. C., Marshall, J. W. A., & Weijman, J. F. (2017). The role of peroxiredoxin 1 in redox sensing and transducing. Archives of Biochemistry & Biophysics, 617, 60-67. doi: 10.1016/j.abb.2016.10.009

Lee, S. L. J., Horsfield, J. A., Black, M. A., Rutherford, K., Fisher, A., & Gemmell, N. J. (2017). Histological and transcriptomic effects of 17α-methyltestosterone on zebrafish gonad development. BMC Genomics, 18, 557. doi: 10.1186/s12864-017-3915-z

Liu, Y.-F., Oey, I., Bremer, P., Carne, A., & Silcock, P. (2017). Effects of pH, temperature and pulsed electric fields on the turbidity and protein aggregation of ovomucin-depleted egg white. Food Research International, 91, 161-170. doi: 10.1016/j.foodres.2016.12.005

Liu, Y.-F., Oey, I., Bremer, P., Silcock, P., & Carne, A. (2017). In vitro peptic digestion of ovomucin-depleted egg white affected by pH, temperature and pulsed electric fields. Food Chemistry, 231, 165-174. doi: 10.1016/j.foodchem.2017.03.136

Loo, L.-H., Bougen-Zhukov, N. M., & Tan, W.-L. C. (2017). Early spatiotemporal-specific changes in intermediate signals are predictive of cytotoxic sensitivity to TNFα and co-treatments. Scientific Reports, 7, 43541. doi: 10.1038/srep43541

Lotan, Y., OʼSullivan, P., Raman, J. D., Shariat, S. F., Kavalieris, L., Frampton, C., Guilford, P., … Darling, D. (2017). Clinical comparison of noninvasive urine tests for ruling out recurrent urothelial carcinoma. Urologic Oncology, 35(8), 513.e15-513.e22. doi: 10.1016/j.urolonc.2017.03.008

Ludgate, J. L., Wright, J., Stockwell, P. A., Morison, I. M., Eccles, M. R., & Chatterjee, A. (2017). A streamlined method for analysing genome-wide DNA methylation patterns from low amounts of FFPE DNA. BMC Medical Genomics, 10, 54. doi: 10.1186/s12920-017-0290-1

Macknight, R. C., Laing, W. A., Bulley, S. M., Broad, R. C., Johnson, A. A. T., & Hellens, R. P. (2017). Increasing ascorbate levels in crops to enhance human nutrition and plant abiotic stress tolerance. Current Opinion in Biotechnology, 44, 153-160. doi: 10.1016/j.copbio.2017.01.011

Maddock, D. J., Gerth, M. L., & Patrick, W. M. (2017). An engineered glycerol dehydratase with improved activity for the conversion of meso-2,3-butanediol to butanone. Biotechnology, 12(12), 1700480. doi: 10.1002/biot.201700480

McInnes, T., Zou, D., Rao, D. S., Munro, F. M., Phillips, V. L., McCall, J. L., Black, M. A., Reeve, A. E., & Guilford, P. J. (2017). Genome-wide methylation analysis identifies a core set of hypermethylated genes in CIMP-H colorectal cancer. BMC Cancer, 17, 228. doi: 10.1186/s12885-017-3226-4

Merriman, T. (2017). Genomic Influences on hyperuricemia and gout. Rheumatic Disease Clinics of North America, 43(3), 389-399. doi: 10.1016/j.rdc.2017.04.004

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