Journal publications, Department of Biochemistry, Department of Biochemistry

Edited Book - Research

Tate, W. P., & Peppercorn, K. (Eds.). (2025). Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS): Methods and protocols: Methods in molecular biology (Vol. 2920). New York, NY: Humana Press. doi: 10.1007/978-1-0716-4498-0

Eaton-Rye, J. J., Tripathy, B. C., & Sharkey, T. D. (Eds.). (2012). Photosynthesis: Plastid biology, energy conversion and carbon assimilation. New York: Springer, 856p. doi: 10.1007/978-94-007-1579-0

Chapter in Book - Research

Edgar, C. D., Blair, A., & Tate, W. P. (2025). Measurement of genetic variations in ME/CFS patients in the IDO2 gene encoding an enzyme metabolizing tryptophan. In W. P. Tate & K. Peppercorn (Eds.), Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS): Methods and protocols: Methods in molecular biology (Vol. 2920). (pp. 247-256). New York, NY: Humana Press. doi: 10.1007/978-1-0716-4498-0_14

Kumar, A., Peppercorn, K., & Kleffmann, T. (2025). Quantitative proteomics on immune cells of ME/CFS patients using SWATH-MS. In W. P. Tate & K. Peppercorn (Eds.), Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS): Methods and protocols: Methods in molecular biology (Vol. 2920). (pp. 113-140). New York, NY: Humana Press. doi: 10.1007/978-1-0716-4498-0_8

Peppercorn, K., Edgar, C. D., Al Momani, S., Rodger, E. J., Tate, W. P., & Chatterjee, A. (2025). Application of DNA methylome analysis to patients with ME/CFS. In W. P. Tate & K. Peppercorn (Eds.), Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS): Methods and protocols: Methods in molecular biology (Vol. 2920). (pp. 141-160). New York, NY: Humana Press. doi: 10.1007/978-1-0716-4498-0_9

Morris, J., Liddy, M., & Marshall, C. J. (2024). Ice shell purification of ice-active compounds. In R. Drori & C. A. Stevens (Eds.), Ice binding proteins: Methods and protocols: Methods in molecular biology (Vol. 2730). (pp. 25-34). New York, NY: Humana Press. doi: 10.1007/978-1-0716-3503-2_2

Decourtye-Espiard, L., & Guilford, P. (2023). The chemoprevention of hereditary diffuse gastric cancer. In G. Corso, P. Veronesi & F. Roviello (Eds.), Hereditary gastric and breast cancer syndrome: CDH1: One genotype with multiple phenotypes. (pp. 321-341). Cham, Switzerland: Springer. doi: 10.1007/978-3-031-21317-5_21

Diermeier, S. D., & Leask, M. P. (2023). History and definitions of ncRNAs. In J. Sztuba-Solinska (Ed.), Navigating non-coding RNA: From biogenesis to therapeutic application. (pp. 1-46). London, UK: Academic Press. doi: 10.1016/B978-0-323-90406-3.00002-6

Kavle, R. R., Pritchard, E., Bekhit, A. E.-D. A., Carne, A., & Agyei, D. (2023). Nutrient content and functionalities of edible insects. In S. Grasso & M. Bordiga (Eds.), Edible insects processing for food and feed: From startups to mass production. (pp. 53-84). Boca Raton, FL: CRC Press. doi: 10.1201/9781003165729-4

Nolan, P., Mahmoud, A. E., Kavle, R. R., Carne, A., Bekhit, A. E.-D. A., & Agyei, D. (2023). Edible insects: Protein composition, digestibility, and biofunctionalities. In Z. F. Bhat, J. D. Morton, A. E.-D. A. Bekhit & H. A. R. Suleria (Eds.), Processing technologies and food protein digestion. (pp. 429-494). London, UK: Academic Press. doi: 10.1016/B978-0-323-95052-7.00020-0

Torbati, E., Stuart, G., Krause, K., Brown, C., & Wise, L. (2023). Methods to assess chemokine binding and anti-chemotactic activity of virus proteins. In A. R. Lucas (Ed.), Chemokine-glycosaminoglycan interactions: Methods and protocols: Methods in molecular biology (Vol. 2597). (pp. 217-234). New York, N Y: Humana Press. doi: 10.1007/978-1-0716-2835-5_16

Ahmed, I. A. M., Al-Juhaimi, F. Y., Bhat, Z. F., Carne, A., & Bekhit, A. E.-D. (2022). Non-traditional meat sources, production, nutritional and health aspects, consideration of safety aspects and religious views. In A. E.-D. A. Bekhit, W. W. Riley & M. A. Hussain (Eds.), Alternative proteins: Safety and food security considerations. (pp. 215-270). Boca Raton, FL: CRC Press. doi: 10.1201/9780429299834-8

Ahmmed, M. K., Ahmmed, F., Carne, A., Tian, H. S., & Bekhit, A. E.-D. A. (2022). Fish roe phospholipids and health: Composition, extraction, storage and brain health application. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 93-142). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00005-9

Amin, H. F., Carne, A., & Bekhit, A. E.-D. A. (2022). Fish roe products: Middle East perspective. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 283-310). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00010-2

Bekhit, A. E.-D. A., Ahmmed, M. K., Sicuro, B., Ghelichi, S., & Carne, A. (2022). Fish roe products: European perspective. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 311-341). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00012-6

Bunga, S., Carne, A., & Bekhit, A. E.-D. A. (2022). Composition and nutrition of fish roes. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 41-92). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00011-4

Irvani, N., Carne, A., Agyei, D., & Oey, I. (2022). Algae as an alternative source of protein. In A. E.-D. A. Bekhit, W. W. Riley & M. A. Hussain (Eds.), Alternative proteins: Safety and food security considerations. (pp. 65-84). Boca Raton, FL: CRC Press. doi: 10.1201/9780429299834-4

Jamieson, S. A., McMillan, H. D., & Mace, P. D. (2022). Structural and biophysical characterization of Tribbles homolog 1. In A. M. Pyle & D. W. Christianson (Eds.), Methods in enzymology (Vol. 667). (pp. 37-58). Cambridge, MA: Elsevier. doi: 10.1016/bs.mie.2022.03.023

Marsman, J., Day, R. C., & Gimenez, G. (2022). Circular chromosome conformation capture sequencing (4C-Seq ) in primary adherent cells. In J. Horsfield & J. Marsman (Eds.), Chromatin: Methods and protocols: Methods in molecular biology (Vol. 2458). (pp. 301-320). New York, NY: Springer. doi: 10.1007/978-1-0716-2140-0_16

Sarkar, D., & Diermeier, S. D. (2022). LncRNA-chromatin pull-down using biotin-conjugated DNA probes. In J. Horsfield & J. Marsman (Eds.), Chromatin: Methods and protocols: Methods in molecular biology (Vol. 2458). (pp. 345-357). New York, NY: Springer. doi: 10.1007/978-1-0716-2140-0_19

Smith, A. M., Batson, P. B., Achilleos, K., & Tamberg, Y. (2022). Collecting and culturing bryozoans for regenerative studies. In S. Blanchoud & B. Galliot (Eds.), Whole-body regeneration: Methods and protocols: Methods in molecular biology (Vol. 2450). (pp. 151-177). New York, NY: Springer. doi: 10.1007/978-1-0716-2172-1_8

Smith, J., Day, R. C., & Weeks, R. J. (2022). Next-generation bisulfite sequencing for targeted DNA methylation analysis. In J. Horsfield & J. Marsman (Eds.), Chromatin: Methods and protocols: Methods in molecular biology (Vol. 2458). (pp. 47-62). New York, NY: Springer. doi: 10.1007/978-1-0716-2140-0_3

Sollitto, M., Kenny, N. J., Greco, S., Tucci, C. F., Calcino, A. D., & Gerdol, M. (2022). Detecting structural variants and associated gene presence-absence variation phenomena in the genomes of marine organisms. In C. Verde & D. Giordano (Eds.), Marine genomics: Methods and protocols: Methods in molecular biology (Vol. 2498). (pp. 53-76). New York, NY: Springer. doi: 10.1007/978-1-0716-2313-8_4

Tantamacharik, T., Carne, A., Shavandi, A., & Bekhit, A. E.-D. A. (2022). Keratin as an alternative protein in food and nutrition. In A. E.-D. A. Bekhit, W. W. Riley & M. A. Hussain (Eds.), Alternative proteins: Safety and food security considerations. (pp. 173-214). Boca Raton, FL: CRC Press. doi: 10.1201/9780429299834-7

Verachia, W., Bekhit, A. E.-D. A., Carne, A., & Bekhit, A. A. (2022). Fish roe from sea urchin: Composition, processing, and quality aspects. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 143-181). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00002-3

Brinkman, F. S. L., Winson, G. L., Done, R. E., Filloux, A., Francis, V. I., Goldberg, J. B., … Lamont, I. L., … Welch, M. (2021). The Pseudomonas aeruginosa whole genome sequence: A 20th anniversary celebration. In R. K. Poole & D. J. Kelly (Eds.), Advances in microbial physiology. (pp. 25-88). London, UK: Elsevier. doi: 10.1016/bs.ampbs.2021.07.001

Gullo, I., Oliveira, C., van der Post, R. S., van Dieren, J. M., Davis, J. L., Bougen-Zhukov, N., Guilford, P., & Carneiro, F. (2021). Updated perspective and directions on hereditary diffuse gastric cancer. In B. Jenkins (Ed.), Research and clinical applications of targeting gastric neoplasms. (pp. 217-258). London, UK: Elsevier. doi: 10.1016/B978-0-323-85563-1.00011-3

Bredow, M., Tomalty, H. E., Graham, L. A., Gruneberg, A. K., Middleton, A. J., Vanderbeld, B., … Walker, V. K. (2020). Isolation and characterization of ice-binding proteins from higher plants. In D. K. Hincha & E. Zuther (Eds.), Plant cold acclimation: Methods and protocols: Methods in molecular biology (Vol. 2156). (2nd ed.) (pp. 303-332). New York, NY: Humana Press. doi: 10.1007/978-1-0716-0660-5_21

Cridge, A. G., Dearden, P. K., & Brownfield, L. R. (2019). The developmental hourglass in the evolution of embryogenesis. In L. N. de la Rosa & G. Müller (Eds.), Evolutionary developmental biology: A reference guide. Cham, Switzerland: Springer. doi: 10.1007/978-3-319-33038-9

Dearden, P. K. (2019). Hourglass or twisted ribbon? In W. Tworzydlo & S. M. Bilinski (Eds.), Evo-Devo: Non-model species in cell developmental biology: Results and problems in cell differentiation. (pp. 21-29). Cham, Switzerland: Springer. doi: 10.1007/978-3-030-23459-1_2

Douglass, A., & Legge, M. (2019). Regulating, surrogacy in New Zealand: Evolving policy and cautious liberalism under the HART Act. In A. Masselot & R. Powell (Eds.), Perspectives on commercial surrogacy in New Zealand: Ethics, law, policy and rights. (pp. 1-24). Christchurch, New Zealand: Centre for Commercial & Corporate Law, University of Canterbury.

Fagerlund, R. D., Ferguson, T. J., Maxwell, H. W. R., Opel-Reading, H. K., Krause, K. L., & Fineran, P. C. (2019). Reconstitution of CRISPR adaptation in vitro and its detection by PCR. In S. Bailey (Ed.), Methods in enzymology (Vol. 616: CRISPR-Cas enzymes). (pp. 411-433). Cambridge, MA: Academic Press. doi: 10.1016/bs.mie.2018.10.024

Maschio, L., Parnell, A. E., Lees, N. R., Willis, C. L., Schaffitzel, C., Stach, J. E. M., & Race, P. R. (2019). Cloning, expression, and purification of intact polyketide synthase modules. In C. Schmidt-Dannert & M. B. Quin (Eds.), Methods in enzymology: (Vol. 617): Metabolons and supramolecular enzyme assemblies. (pp. 63-82). Cambridge, MA: Academic Press. doi: 10.1016/bs.mie.2018.12.018

Shavandi, A., Hou, Y., Carne, A., McConnell, M., & Bekhit, A. E.-D. A. (2019). Marine waste utilization as a source of functional and health compounds. In F. Toldrá (Ed.), Advances in food and nutrition research (Vol. 87). (pp. 187-254). Cambridge, MA: Elsevier. doi: 10.1016/bs.afnr.2018.08.001

Basak, I., & Møller, S. G. (2018). Plant thermotolerance proteins, misfolded proteins, and neurodegenerative diseases. In A. R. Kermode & L. Jiang (Eds.), Molecular pharming: Applications, challenges, and emerging areas. (pp. 457-474). Hoboken, NJ: John Wiley & Sons. doi: 10.1002/9781118801512.ch18

Burrow, K., Young, W., Carne, A., McConnell, M., & Bekhit, A. E.-D. (2018). Interactions of milk proteins with minerals. In G. W. Smithers (Ed.), Reference module in food science. Elsevier. doi: 10.1016/B978-0-08-100596-5.22489-X

Ehrhardt, M. K. G., Warring, S. L., & Gerth, M. L. (2018). Screening chemoreceptor-ligand interactions by high-throughput thermal-shift assays. In M. D. Manson (Ed.), Bacterial chemosensing: Methods and protocols: Methods in molecular biology (Vol. 1729). (pp. 281-290). New York, NY: Humana Press. doi: 10.1007/978-1-4939-7577-8_22

Mungure, T. E., Bekhit, A. E.-D., Carne, A., Roohinejad, S., Mallikarjunan, K., & Birch, J. (2018). Application of HPLC in characterisation of triacylglycerols and detection of adulteration in cold pressed seed oils. In G. W. Smithers (Ed.), Reference module in food science. Elsevier. doi: 10.1016/B978-0-08-100596-5.22526-2

Tantamacharik, T., Carne, A., Agyei, D., Birch, J., & Bekhit, A. E.-D. A. (2018). Use of plant proteolytic enzymes for meat processing. In M. G. Guevara & G. R. Daleo (Eds.), Biotechnological applications of plant proteolytic enzymes. (pp. 43-67). Cham, Switzerland: Springer. doi: 10.1007/978-3-319-97132-2_3

Weller, J. L., & Macknight, R. C. (2018). Functional genomics and flowering time in Medicago truncatula: An overview. In L. A. Cañas & J. P. Beltrán (Eds.), Functional genomics in Medicago truncatula: Methods and protocols: Methods in molecular biology (Vol. 1822). (pp. 261-271). New York, NY: Humana Press. doi: 10.1007/978-1-4939-8633-0_17

Bekhit, A. E.-D. A., Carne, A., Ryder, K., Ha, M., & Kong, L. (2017). Manipulation of meat structure: Use of exogenous proteases. In A. E.-D. A. Bekhit (Ed.), Advances in meat processing technology. (pp. 65-120). Boca Raton, FL: CRC Press. doi: 10.1201/9781315371955

Bekhit, A. E.-D. A., Suwandy, V., Carne, A., Mohamed Ahmed, I. A., & Wang, Z. (2017). Manipulation of meat quality: Electrical stimulation and pulsed electric field. In A. E.-D. A. Bekhit (Ed.), Advances in meat processing technology. (pp. 121-168). Boca Raton, FL: CRC Press. doi: 10.1201/9781315371955

Chatterjee, A., Rodger, E. J., Morison, I. M., Eccles, M. R., & Stockwell, P. A. (2017). Tools and strategies for analysis of genome-wide and gene-specific DNA methylation patterns. In G. J. Seymour, M. P. Cullinan & N. C. K. Heng (Eds.), Oral biology: Molecular techniques and applications: Methods in molecular biology (Vol. 1537). (2nd ed.) (pp. 249-277). New York, NY: Springer. doi: 10.1007/978-1-4939-6685-1_15

Chatterjee, A., Rodger, E. J., Stockwell, P. A., Le Mée, G., & Morison, I. M. (2017). Generating multiple base-resolution DNA methylomes using reduced representation bisulfite sequencing. In G. J. Seymour, M. P. Cullinan & N. C. K. Heng (Eds.), Oral biology: Molecular techniques and applications: Methods in molecular biology (Vol. 1537). (2nd ed.) (pp. 279-298). New York, NY: Springer. doi: 10.1007/978-1-4939-6685-1_16

Chia, J., Burrow, K., Carne, A., McConnell, M., Samuelsson, L., Day, L., … Bekhit, A. E.-D. A. (2017). Minerals in sheep milk. In R. R. Watson, R. J. Collier & V. R. Preedy (Eds.), Nutrients in dairy and their implications for health and disease. (pp. 345-362). London, UK: Elsevier. doi: 10.1016/B978-0-12-809762-5.00027-9

Chisnall, M., & Macknight, R. (2017). Importance of Vitamin C in human health and disease. In M. A. Hossain, S. Munné-Bosch, D. J. Burritt, P. Diaz-Vivancos, M. Fujita & A. Lorence (Eds.), Ascorbic Acid in Plant Growth, Development and Stress Tolerance. (pp. 491-501). Cham, Switzerland: Springer. doi: 10.1007/978-3-319-74057-7

Cridge, A., Harrop, T., Lovegrove, M., Remnant, E., & Dearden, P. (2017). Nutrition and epigenetic change in insects: Evidence and implications. In H. Verlinden (Ed.), Advances in insect physiology (Vol. 53): Insect epigenetics. (pp. 31-54). London, UK: Academic Press. doi: 10.1016/bs.aiip.2017.06.001

Fitzgerald, R. P., & Legge, M. (2017). Ethics for embryologists. In R. M. Shaw (Ed.), Bioethics beyond altruism: Donating and transforming human biological materials. (pp. 141-164). Cham, Switzerland: Palgrave Macmillan. doi: 10.1007/978-3-319-55532-4_6

Peters, B., Aidley, J., Cadzow, M., Twell, D., & Brownfield, L. (2017). Identification of cis-regulatory modules that function in the male germline of flowering plants. In A. Schmidt (Ed.), Plant germline development: Methods and protocols: Methods in molecular biology (Vol. 1669). (pp. 275-293). Springer. doi: 10.1007/978-1-4939-7286-9_22

Twell, D., & Brownfield, L. (2017). Analysis of fluorescent reporter activity in the male germline during pollen development by confocal microscopy. In A. Schmidt (Ed.), Plant germline development: Methods and protocols: Methods in molecular biology (Vol. 1669). (pp. 67-75). Springer. doi: 10.1007/978-1-4939-7286-9_6

Weijman, J. F., Riedl, S. J., & Mace, P. D. (2017). Structural studies of ERK2 protein complexes. In G. Jimenez (Ed.), ERK signaling: Methods and protocols: Methods in molecular biology (Vol: 1487). (pp. 53-63). New York, NY: Springer. doi: 10.1007/978-1-4939-6424-6_4

Brownfield, L., & Twell, D. (2016). Plant Reproduction. In eLS. Chichester, UK: John Wiley & Sons. doi: 10.1002/9780470015902.a0002046.pub2

Reid, S., Chan, L. C. L., Matindoost, L., Pushparajan, C., & Visnovsky, G. (2016). Cell culture for production of insecticidal viruses. In T. R. Glare & M. E. Moran-Diez (Eds.), Microbial-based biopesticides: Methods and protocols: Methods in molecular biology (Vol. 1477). (pp. 95-117). New York: Springer. doi: 10.1007/978-1-4939-6367-6_9

Biswas, A., Fineran, P. C., & Brown, C. M. (2015). Computational detection of CRISPR/crRNA targets. In M. Lundgren, E. Charpentier & P. C. Fineran (Eds.), CRISPR: Methods in molecular biology (Vol. 1311). (pp. 77-89). New York, NY: Humana Press. doi: 10.1007/978-1-4939-2687-9_5

Empson, R. M., Tantirigama, M. L. S., Oswald, M. J., Hughes, S. M., & Knöpfel, T. (2015). Combined immunochemistry and live imaging of fluorescent protein expressing neurons in mouse brain. In A. Merighi & L. Lossi (Eds.), Immunocytochemistry and related techniques. (pp. 357-373). New York: Springer. doi: 10.1007/978-1-4939-2313-7_19

Poulter, R. T. M., & Butler, M. I. (2015). Tyrosine recombinase retrotransposons and transposons. In N. L. Craig, M. Chandler, M. Gellert, A. M. Lambowitz, P. A. Rice & S. B. Sandmeyer (Eds.), Mobile DNA III. (pp. 1271-1291). Washington, DC: ASM Press.

Copp, J. N., Hanson-Manful, P., Ackerley, D. F., & Patrick, W. M. (2014). Error-prone PCR and effective generation of gene variant libraries for directed evolution. In E. M. J. Gillam, J. N. Copp & D. F. Ackerley (Eds.), Directed evolution library creation: Methods and protocols. (2nd ed.) (pp. 3-22). New York: Springer. doi: 10.1007/978-1-4939-1053-3_16

Day, R., & Macknight, R. (2014). Screening for imprinted genes using high-resolution melting analysis of PCR amplicons. In C. Spillane & P. C. McKeown (Eds.), Plant epigentics and epigenomics: Methods and protocols. (pp. 71-83). Humana Press. doi: 10.1007/978-1-62703-773-0_5

Hill, R. E., & Eaton-Rye, J. J. (2014). Plasmid Construction by SLIC or Sequence and Ligation-Independent Cloning. In S. Valla & R. Lale (Eds.), DNA cloning and assembly methods: Methods in molecular biology (Vol. 1116). (pp. 25-36). New York: Humana. doi: 10.1007/978-1-62703-764-8_2

Mace, P. D., Riedl, S. J., & Salvesen, G. S. (2014). Caspase enzymology and activation mechanisms. In A. Ashkenasi, J. Yuan & J. A. Wells (Eds.), Methods in enzymology: Regulated cell death Part A: Apoptotic mechanisms (Vol.544). (pp. 161-178). San Diego, CA: Academic Press. doi: 10.1016/b978-0-12-417158-9.00007-8

Middleton, A. J., Budhidarmo, R., & Day, C. L. (2014). Use of E2~ubiquitin conjugates for the characterization of ubiquitin transfer by RING E3 ligases such as the inhibitor of apoptosis proteins. In A. Ashkenazi, J. A. Wells & J. Yuan (Eds.), Methods in enzymology (Vol. 545). (pp. 243-263). San Diego, CA: Elsevier. doi: 10.1016/B978-0-12-801430-1.00010-X

Middleton, A. J., Vanderbeld, B., Bredow, M., Tomalty, H., Davies, P. L., & Walker, V. K. (2014). Isolation and characterization of ice-binding proteins from higher plants. In D. K. Hincha & E. Zuther (Eds.), Plant cold acclimation: Methods and Protocols (Methods in Molecular Biology: Vol. 1166). (pp. 255-277). New York: Springer. doi: 10.1007/978-1-4939-0844-8_19

Najafpour, M. M., Sedigh, D. J., Eaton-Rye, J. J., & Allakhverdiev, S. I. (2014). The water-oxidizing complex in Photosystem II. In S. I. Allakhverdiev, A. B. Rubin & V. A. Shuvalov (Eds.), Contemporary problems of photosynthesis (Vol. 1). (pp. 325-341). Moscow, Russia: Izhevsk Institute of Computer Science.

Osborne, A. J., Duncan, E. J., Cridge, A. G., & Dearden, P. K. (2014). Epigenetics and the maternal germline. In T. Tollefsbol (Ed.), Transgenerational epigenetics: Evidence and debate. (pp. 27-41). London, UK: Academic Press. doi: 10.1016/B978-0-12-405944-3.00004-0

Patrick, W. M., & Gerth, M. L. (2014). ITCHY: Incremental Truncation for the Creation of Hybrid Enzymes. In E. M. J. Gillam, J. N. Copp & D. F. Ackerley (Eds.), Directed evolution library creation: Methods and protocols. (2nd ed.) (pp. 225-244). New York: Springer. doi: 10.1007/978-1-4939-1053-3_16

Sharpe, M. L., Hastings, J. W., & Krause, K. L. (2014). Luciferases and light-emitting accessory proteins: Structural biology. In eLS. Chichester, UK: John Wiley & Sons. doi: 10.1002/9780470015902.a0003064.pub2

Stevens, S. G., & Brown, C. M. (2014). Bioinformatic methods to discover Cis-regulatory elements in mRNAs. In N. K. Kasabov (Ed.), Springer handbook of bio-/neuro-informatics. (pp. 151-169). Dordrecht, The Netherlands: Springer. doi: 10.1007/978-3-642-30574-0_10

Bekhit, A. E., Hopkins, D. L., Farouk, M. M., & Carne, A. (2013). Interventions to improve the tenderness of fresh meat: A future prospect for camel meat research. In I. T. Kadim, O. Mahgoub, B. Faye & M. Farouk (Eds.), Camel meat and meat products. (pp. 153-185). Oxford, UK: CABI.

Hanson-Manful, P., & Patrick, W. M. (2013). Construction and analysis of randomized protein-encoding libraries using error-prone PCR. In J. A. Gerrard (Ed.), Protein nanotechnology: Protocols, instrumentation, and applications. (2nd ed.) (pp. 251-267). Humana Press. doi: 10.1007/978-1-62703-354-1-15

Merriman, T. R., & Flynn, T. J. (2013). Molecular genetics of hyperuricaemia and gout. In eLS. Chichester: John Wiley & Sons. doi: 10.1002/9780470015902.a0025153

Merriman, T. R., & McKinney, C. (2013). An update on the genetic causes of hyperuricemia and gout. In N. Dalbeth, F. Perez-Ruiz & N. Schlesinger (Eds.), Gout. (pp. 54-69). London, UK: Future Medicine. doi: 10.2217/ebo.12.256

Picard, K., Lee, R., Hellens, R., & Macknight, R. (2013). Transient gene expression in Medicago truncatula leaves via agroinfiltration. In R. J. Rose (Ed.), Legume genomics: Methods and protocols: Methods in molecular biology (Vol. 1069). (pp. 215-226). New York: Springer. doi: 10.1007/978-1-62703-613-9_15

Macknight, R. C., Herridge, R. P., & Day, R. C. (2012). Using transcriptomics to reveal gene networks of seed development in Arabidopsis. In G. K. Agrawal & R. Rakwal (Eds.), Seed development: OMICS technologies toward Improvement of seed quality and crop yield. (pp. 99-110). Dordrecht, The Netherlands: Springer. doi: 10.1007/978-94-007-4749-4_6

McConnell, I. L., Eaton-Rye, J. J., & van Rensen, J. J. S. (2012). Regulation of Photosystem II electron transport by bicarbonate. In J. J. Eaton-Rye, B. C. Tripathy & T. D. Sharkey (Eds.), Photosynthesis: Plastid biology, energy conversion and carbon assimilation. (pp. 475-500). New York: Springer. doi: 10.1007/978-94-007-1579-0

Collins, L. J., Schönfeld, B., & Chen, X. S. (2011). The epigenetics of non-coding RNA. In T. Tollefsbol (Ed.), Handbook of epigenetics: The new molecular and medical genetics. (pp. 49-61). London: Academic Press. doi: 10.1016/B978-0-12-375709-8.00004-6

Daly, T., Chen, X. S., & Penny, D. (2011). How old are RNA networks? In L. J. Collins (Ed.), RNA infrastructure and networks: Advances in experimental medicine and biology (Vol. 722). (pp. 255-273). New York: Springer Science+Business Media. doi: 10.1007/978-1-4614-0332-6

Day, R. C. (2010). Laser microdissection of paraffin-embedded plant tissues for transcript profiling. In L. Hennig & C. Köhler (Eds.), Plant developmental biology: Methods and protocols. (pp. 321-346). New York: Spinger. doi: 10.1007/978-1-60761-765-5_22

Dearden, P. K., Duncan, E. J., & Wilson, M. J. (2010). The honeybee Apis mellifera. In Emerging model organisms: A laboratory manual (Vol. 2). (pp. 223-246). Cold Spring Harbor, NY: Cold Spring Harbor Press.

Eaton-Rye, J. (2010). Construction of gene interruptions and gene deletions in the cyanobacterium Synechocystis sp. strain PCC 6803. In R. Carpentier (Ed.), Photosynthesis Research Protocols. (2nd ed.) (pp. 295-312). NY: Springer. doi: 10.1007/978-1-60761-925-3_22

von Zychlinski, A., & Gruissem, W. (2009). Preparation and analysis of plastid proteomes by 2DE. In D. Sheehan & R. Tyther (Eds.), Two-dimensional electrophoresis protocols: Methods in molecular biology (Vol. 519). (pp. 205-220). Totowa, NJ: Humana Press. doi: 10.1007/978-1-59745-281-6_13

von Zychilinski, A., Reiland, S., Gruissem, W., & Baginsky, S. (2008). Etioplast. In G. K. Agrawal & R. Rakwal (Eds.), Plant Proteomics: Technologies, strategies, and applications. (pp. 351-360). Hoboken, NJ: John Wiley & Sons. doi: 10.1002/9780470369630.ch24

Hastings, J. W., & Krause, K. L. (2006). Luciferases and light-emitting accessory proteins: Structural biology. In Encyclopedia of Life Sciences. New York: John Wiley & Sons. doi: 10.1038/npg.els.0003064

Chapter in Book - Other

Yang, Z., Guarracino, A., Biggs, P. J., Black, M. A., Ismail, N., Wold, J. R., Merriman, T. R., … de Ligt, J. (2024). Pangenome graphs in infectious disease: A comprehensive genetic variation analysis of Neisseria meningitidis leveraging Oxford Nanopore long reads. In P. J. Dias, S. Tulasi & D. Verma (Eds.), Microbial comparative genomics and pangenomics: New tools, approaches and insights into gene and genome evolution. Lausanne, Switzerland: Frontiers Media. doi: 10.3389/978-2-8325-5650-4

Tate, W. P., & Marshall, C. J. (2018). Post-dormancy transcription and translation in the brine shrimp. In R. A. Browne, P. Sorgeloos & C. N. A. Trotman (Eds.), Artemia biology. (pp. 21-36). Boca Raton, FL: Taylor & Francis. doi: 10.1201/9781351069892

Eaton-Rye, J. J. (2012). Contributions of Govindjee, 1970-1999. In J. J. Eaton-Rye, B. C. Tripathy & T. D. Sharkey (Eds.), Photosynthesis: Plastid biology, energy conversion and carbon assimilation. New York: Springer. doi: 10.1007/978-94-007-1579-0

Hastings, J. W., & Krause, K. L. (2007). Luciferases and light-emitting accessory proteins: Structural biology. In Encyclopedia of Life Sciences. New York: John Wiley & Sons.

Journal - Research Article

Alvarez-Costes, S., Baker, C. S., Constantine, R., Carroll, E. L., Guhlin, J., Dutoit, L., Ferreira, S., … Gemmell, N. J., Gillum, J., … Rayment, W., … Te Aikā, B., Urban, L., & Alexander, A. (2025). Leveraging synteny to generate reference genomes for conservation: Assembling the genomes of Hector's and Māui dolphins. Molecular Ecology Resources, e14109. Advance online publication. doi: 10.1111/1755-0998.14109

Bicknell, L. S., Hirschhorn, J. N., & Savarirayan, R. (2025). The genetic basis of human height. Nature Reviews Genetics. Advance online publication. doi: 10.1038/s41576-025-00834-1

Burgess, A. E., Loughran, T. A., Turk, L. S., Nyvall, H. G., Dunlop, J. L., Jamieson, S. A., Curry, J. R., … Mace, P. D. (2025). DET1 dynamics underlie cooperative ubiquitination by CRL4^DET1-COP1 complexes. Science Advances, 11(9), eadq4187. doi: 10.1126/sciadv.adq4187

Cuinat, S., Chatron, N., Petit, F., Brunelle, P., Dincuff, E., Aubert Mucca, M., … Mulligan, M., Bicknell, L. S., … Putoux, A. (2025). XRCC4-related microcephalic primordial dwarfism: Description of a clinical series of 7 cases, phenotype expansion and new diagnostic approaches. European Journal of Human Genetics. Advance online publication. doi: 10.1038/s41431-025-01821-0

Dainty, K. R., Duyvestyn, J. M., & Flores, H. A. (2025). Targeted knockdown of in vitro candidates does not alter Wolbachia density in vivo. Journal of Invertebrate Pathology, 211, 108346. doi: 10.1016/j.jip.2025.108346

Dunnet, M. J., Morison, I. M., Bond, D. M., & Hore, T. A. (2025). High-throughput, pan-leukocyte biomarkers for the detection of inflammation in human breastmilk and stool. Frontiers in Epigenetics & Epigenomics, 3, 535838. doi: 10.3389/freae.2025.1535838

Gardner, P. P. (2025). A bioinformatician, computer scientist, and geneticist lead bioinformatic tool development: Which one is better? Bioinformatics Advances, vbaf011. Advance online publication. doi: 10.1093/bioadv/vbaf011

Greenhough, H., Vignier, J., Smith, K. F., Brown, C. M., Kenny, N. J., & Rolton, A. (2025). Multi-stressor dynamics: Effects of marine heatwave stress and harmful algal blooms on juvenile mussel (Perna canaliculus) survival and physiology. Science of the Total Environment, 964, 178590. doi: 10.1016/j.scitotenv.2025.178590

Kanokruangrong, S., Kebede, B., Carne, A., Stewart, I., & Bekhit, A. E.-D. A. (2025). Metabolomic investigation of fresh beef, lamb and venison using nuclear magnetic resonance spectroscopy in relation to colour stability. Food Chemistry, 463, 141447. doi: 10.1016/j.foodchem.2024.141447

Khosravi, M., Allakhverdiev, S. I., Eaton-Rye, J. J., Hołyńska, M., Aro, E.-M., Shen, J.-R., & Najafpour, M. M. (2025). Fundamental properties, characterization techniques, and applications for photo(electro) catalysis: From nanosized manganese oxides to manganese coordination compounds [Review]. Coordination Chemistry Reviews, 527, 216396. doi: 10.1016/j.ccr.2024.216396

King-Hudson, T.-R., Pearson, A. G., Dunstan-Harrison, C., Powell, M. T., Magon, N. J., Edwards, T. S., Paton, L. N., … Kettle, A. J., Pearson, J. F., Kokaua, J., … Theodore, R., Ramrakha, S., … Moffitt, T. E., Ledgerwood, E. C., & Hampton, M. B. (2025). Biomarkers of oxidative and mitochondrial stress are associated with accelerated pace of aging at midlife in a birth cohort. Journals of Gerontology Series A. Advance online publication. doi: 10.1093/gerona/glaf105

Krittaphol, W., Martin, L. W., Lamont, I. L., & Walker, G. F. (2025). A sensitive reverse-phase ultra performance liquid chromatography-tandem mass spectrometry method for the determination of tobramycin in Pseudomonas aeruginosa cell lysate. Journal of Pharmaceutical & Biomedical Analysis, 260, 116743. doi: 10.1016/j.jpba.2025.116743

Lim, C. S., Gibbon, A. K., Nguyen, A. T. T., Chieng, G. S. W., & Brown, C. M. (2025). RIBOSS detects novel translational events by combining long- and short-read transcriptome and translatome profiling. Briefings in Bioinformatics, 26(2), bbaf164. doi: 10.1093/bib/bbaf164

McLaughlin, G., & Dearden, P. (2025). Evaluation of candidate reference genes for gene expression research in Vespula vulgaris. Frontiers in Insect Science, 5, 1495626. doi: 10.3389/finsc.2025.1495626

Mousazadeh, Y., Zand, Z., Akbari, N., Eaton-Rye, J. J., Shen, J.-R., Allakhverdiev, S. I., & Najafpour, M. M. (2025). Manganese-based molecular systems in catalytic oxygen-evolution reaction: The role of nanoparticles, challenges, and opportunities. Coordination Chemistry Reviews, 541, 216805. doi: 10.1016/j.ccr.2025.216805

Rossig, C., Paluda, A., Chen, R., Middleton, A. J., & Day, C. L. (2025). Arkadia and Ark2C promote substrate ubiquitylation with multiple E2 enzymes. Journal of Molecular Biology. Advance online publication. doi: 10.1016/j.jmb.2025.169259

Rye, C. E., Puketapu-Watson, H., Wihongi, H., Te Aika, B., Macartney-Coxson, D., de Ligt, J., … Robertson, S. P., Halliday, B. J., Goodin, E., Markie, D. M., Lamont, A., & Wilcox, P. (2025). Rakeiora Genomics Platform: A pathfinder for genomic medicine research in Aotearoa New Zealand. Journal of the Royal Society of New Zealand. Advance online publication. doi: 10.1080/03036758.2025.2469626

Salamanca-Díaz, D. A., Horkan, H. R., García-Castro, H., Emili, E., Salinas-Saavedra, M., Pérez-Posada, A., … Kenny, N. J., … Solana, J. (2025). The Hydractinia cell atlas reveals cellular and molecular principles of cnidarian coloniality. Nature Communications, 16, 2121. doi: 10.1038/s41467-025-57168-z

Salvesen, H. A., & Dearden, P. K. (2025). Genome editing in hymenoptera. Insect Biochemistry & Molecular Biology, 180, 104300. doi: 10.1016/j.ibmb.2025.104300

Te Aika, B., Liggins, L., Rye, C., Perkins, E. O., Huh, J., Brauning, R., Godfery, T., & Black, M. A. (2025). Aotearoa genomic data repository: An āhuru mōwai for taonga species sequencing data. Molecular Ecology Resources, 25, e13866. doi: 10.1111/1755-0998.13866

Toomata, Z. L., Jiang, Y., Yeu, R. Q., Brandon, R., Tweedie-Cullen, R. Y., Nehren, N., … Leask, M., Merriman, T. R., Paul, R., Merry, T. L., Shepherd, P. R., & Murphy, R. (2025). Reducing weight gain with pioglitazone vs vildagliptin in CREBRF rs373863828 A-allele carriers: Insights form the WORTH trial. Diabetes, Metabolic Syndrome & Obesity, 18, 1255-1262. doi: 10.2147/dmso.S500336

Upadhyay, T., Woods, E. C., Dela Ahator, S., Julin, K., Faucher, F. F., Uddin, M. J., … Fellner, M., & Bogyo, M. (2025). Identification of covalent inhibitors of Staphylococcus aureus serine hydrolases important for virulence and biofilm formation. Nature Communications, 16, 5046. doi: 10.1038/s41467-025-60367-3

Wang, S., Woods, E. C., Jo, J., Zhu, J., Hansel-Harris, A., Holcomb, M., … Fellner, M., … Bogyo, M. (2025). An mRNA display approach for covalent targeting of a Staphylococcus aureus virulence factor. Journal of the American Chemical Society. Advance online publication. doi: 10.1021/jacs.4c15713

Warring, S., Sisson, H. M., Randall, G., Grimon, D., Dams, D., Gutiérrez, D., Fellner, M., Fagerlund, R. D., … Jackson, S. A., & Fineran, P. C. (2025). Engineering an antimicrobial chimeric endolysin that targets the phytopathogen Pseudomonas syringae pv. actinidiae. Journal of Biological Chemistry. Advance online publication. doi: 10.1016/j.jbc.2025.110224

West, A. G., Digby, A., Kākāpō Recovery Team, Kākāpō Aspergillosis Research Consortium, including Dearden, P. K., Gemmell, N. J., Guhlin, J., Le Lec, M., Quinones Mateu, M., and Taylor, M. D. (2025). The mycobiota of faeces from the critically endangered kākāpō and associated nest litter. New Zealand Journal of Zoology, 52(2), 171-192. doi: 10.1080/03014223.2023.2170428

Xu, C., Feng, J., Zhou, Y., Ren, H., Pan, X., Chen, S., … Lamont, I. L., Pletzer, D., & Wu, W. (2025). Azithromycin represses evolution of ceftazidime/avibactam resistance by translational repression of rpoS in Pseudomonas aeruginosa. Journal of Bacteriology. Advance online publication. doi: 10.1128/jb.00552-24

Achilleos, K., Smith, A. M., Kenny, N. J., & Brown, C. M. (2024). A new transcriptome resource for Cellaria immersa (Phylum: Bryozoa) reveals candidate genes and proteins related to biomineralization. Frontiers in Marine Science. Advance online publication. doi: 10.3389/fmars.2024.1389708

Álvarez-Campos, P., García-Castro, H., Emili, E., Pérez-Posada, A., del Olmo, I., Peron, S., … Kenny, N. J., … Solana, J. (2024). Annelid adult cell type diversity and their pluripotent cellular origins. Nature Communications, 15, 3194. doi: 10.1038/s41467-024-47401-6

Arshad, F., & Eaton-Rye, J. J. (2024). Indirect interactions involving the PsbM or PsbT subunits and the PsbO, PsbU and PsbV proteins stabilize assembly and activity of Photosystem II in Synechocystis sp. PCC 6803. Photosynthesis Research. Advance online publication. doi: 10.1007/s11120-024-01091-9

Barzak, F. M., Lu, A., Geltzeiler, A. R., Ledgerwood, E. C., Chung, W. K., & Day, C. L. (2024). A novel RNF125 variant associated with Tenorio syndrome alters ubiquitin chain binding. Clinical Genetics, 105, 254-261. doi: 10.1111/cge.14457

Bilton, T. P., Sharma, S. K., Schofield, M. R., Black, M. A., Jacobs, J. M. E., Bryan, G. J., & Dodds, K. G. (2024). Construction of relatedness matrices in autopolyploid populations using low-depth high-throughput sequencing data. Theoretical & Applied Genetics, 137, 64. doi: 10.1007/s00122-024-04568-2

Biswas, S., Khaing, E. P., Zhong, V., & Eaton-Rye, J. J. (2024). Arg24 and 26 of the D2 protein are important for photosystem II assembly and plastoquinol exchange in Synechocystis sp. PCC 6803. Biochimica et Biophysica Acta: Bioenergetics, 1865(4), 149150. doi: 10.1016/j.bbabio.2024.149150

Brown, T. J., Vass, I., Summerfield, T. C., & Eaton-Rye, J. J. (2024). Phe265 of the D1 protein is required to stabilize plastoquinone binding in the QB-binding site of photosystem II in Synechocystis sp. PCC 6803. Biochemical & Biophysical Research Communications, 733, 150692. doi: 10.1016/j.bbrc.2024.150692

Castañeda-Casasola, C. C., Nieto-Jacobo, M. F., Soares, A., Padilla-Padilla, E. A., Anducho-Reyes, M. A., Brown, C., … Mendoza-Mendoza, A. (2024). Unveiling a microexon switch: Novel regulation of the activities of sugar assimilation and plant-cell-wall-degrading xylanases and cellulases by Xlr2 in Trichoderma virens. International Journal of Molecular Sciences, 25, 5172. doi: 10.3390/ijms25105172

Chin, T. C., Wilbanks, S. M., & Ledgerwood, E. C. (2024). Altered conformational dynamics contribute to species-specific effects of cytochrome c mutations on caspase activation. Journal of Biological Inorganic Chemistry. Advance online publication. doi: 10.1007/s00775-024-02044-2

Chinzowu, T., Chyou, T.-y., & Nishtala, P. S. (2024). Antibiotic-associated acute kidney injury among older adults: A case-crossover study. Clinical Drug Investigation, 44, 131-139. doi: 10.1007/s40261-023-01339-7

Cullen, G., Delargy, E., & Dearden, P. K. (2024). Development of germline progenitors in larval queen honeybee ovaries. Biology Open, 13(bio060511). doi: 10.1242/bio.060511

Currie, M. J., Davies, J. S., Scalise, M., Gulati, A., Wright, J. D., Newton-Vesty, M. C., … Mace, P. D., … North, R. A. (2024). Structural and biophysical analysis of a Haemophilus influenzae tripartite ATP-independent periplasmic (TRAP) transporter. eLIFE, 13, RP92307. doi: 10.7554/eLife.92307

Dini, S., Oz, F., Bekhit, A. E.-D. A., Carne, A., & Agyei, D. (2024). Production, characterization, and potential applications of lipopeptides in food systems: A comprehensive review. Comprehensive Reviews in Food Science & Food Safety, 23(4), e13394. doi: 10.1111/1541-4337.13394

Dunstan-Harrison, C., Morison, I. M., & Ledgerwood, E. C. (2024). Inherited thrombocytopenia associated with a variant in the FLI1 binding site in the 5' UTR of ANKRD26. Clinical Genetics. Advance online publication. doi: 10.1111/cge.14547

Faiz, M., Kalev-Zylinska, M. L., Dunstan-Harrison, C., Singleton, D. C., Hay, M. P., & Ledgerwood, E. C. (2024). Megakaryocyte maturation involves activation of the adaptive unfolded protein response. Genes to Cells. Advance online publication. doi: 10.1111/gtc.13151

Fellner, M., Randall, G., Bitac, I. R. C. G., Warrender, A. K., Sethi, A., Jelinek, R., & Kass, I. (2024). Similar but distinct: Biochemical characterization of the Staphylococcus aureus serine hydrolases FphH and FphI. Proteins. Advance online publication. doi: 10.1002/prot.26785

Forsman, J. A., Sheridan, K. J., Singh, H., Brown, T. J., Vass, I., Summerfield, T. C., & Eaton-Rye, J. J. (2024). The Psb27 assembly factor and histidine-252 of the D1 protein modify energy transfer to photosystem II in Synechocystis sp. PCC 6803. Physiologia Plantarum, 176, e14154. doi: 10.1111/ppl.14154

Gao, Y., Carne, A., Young, W., Burrow, K., Naji, S., Fraser-Miller, S. J., Gordon, K. C., & Bekhit, A. E.-D. A. (2024). Effect of consumption of sheep and cow milk on rat brain fatty acid and phospholipid composition. Food Chemistry, 439, 138056. doi: 10.1016/j.foodchem.2023.138056

Garcia-Pelaez, J., Dias, A., Guilford, P., & Oliveira, C. (2024). High frequency of lobular breast cancer in CDH1 germline carriers supports update of clinical guidelines for CDH1 testing and pathological characterization. European Journal of Human Genetics, 32(Suppl. 2), P18.059.B. doi: 10.1038/s41431-024-01734-4

Garelja, M. L., Alexander, T. I., Bennie, A., Nimick, M., Petersen, J., Walker, C. S., & Hay, D. L. (2024). Pharmacological characterisation of erenumab, Aimovig, at two calcitonin gene-related peptide responsive receptors. British Journal of Pharmacology, 181, 142-161. doi: 10.1111/bph.16218

Ghomi, F. A., Jung, J. J., Langridge, G. C., Cain, A. K., Boinett, C. J., El Ghany, M. A., … Gardner, P. P., & Barquist, L. (2024). High-throughput transposon mutagenesis in the family Enterobacteriaceae reveals core essential genes and rapid turnover of essentiality. mBio, 15(10). doi: 10.1128/mbio.01798-24

Glen, K. A., & Lamont, I. L. (2024). Characterization of acquired β-lactamases in Pseudomonas aeruginosa and quantification of their contributions to resistance. Microbiology Spectrum. Advance online publication. doi: 10.1128/spectrum.00694-24

Glen, K. A., & Lamont, I. L. (2024). Penicillin-binding protein 3 sequence variations reduce susceptibility of Pseudomonas aeruginosa to β-lactams but inhibit cell division. Journal of Antimicrobial Chemotherapy. Advance online publication. doi: 10.1093/jac/dkae203

Greenhough, H., Smith, K. F., Kenny, N. J., & Rolton, A. (2024). Effects of the toxic dinoflagellate, Alexandrium pacificum, on the marine diatom, Chaetoceros muelleri, and mussel (Perna canaliculus) sperm and hemocytes. Marine Environmental Research, 199, 106630. doi: 10.1016/j.marenvres.2024.106630

Harvey, J. C., Cambridge, L. M., Ellen, C. W., Colonval, M., Hazlett, J. A., Newell, J., … Guilford, P. J. (2024). Analytical validation of Cxbladder detect, triage, and monitor: Assays for detection and management of urothelial carcinoma. Diagnostics, 14, 2061. doi: 10.3390/diagnostics14182061

Herre, C., Ho, A., Eisenbraun, B., Vincent, J., Nicholson, T., Boutsioukis, G., … Krause, K. L., … Sliz, P. (2024). Introduction of the Capsules environment to support further growth of the SBGrid structural biology software collection. Acta Crystallographica Section D, 80, 439-450. doi: 10.1107/s2059798324004881

Herridge, R. P., Dolata, J., Migliori, V., de Santis Alves, C., Borges, F., Schorn, A. J., … Martienssen, R. A. (2024). Pseudouridine guides germline small RNA transport and epigenetic inheritance. Nature Structural & Molecular Biology. Advance online publication. doi: 10.1038/s41594-024-01392-6

Inwood, S. N., Harrop, T. W. R., Shields, M. W., Goldson, S. L., & Dearden, P. K. (2024). Immune system modulation & virus transmission during parasitism identified by multi-species transcriptomics of a declining insect biocontrol system. BMC Genomics, 25, 311. doi: 10.1186/s12864-024-10215-3

Irvani, N., King, J., Hamzelou, S., Ji, D., Tahmasian, A., Kebede, B., Carne, A., Agyei, D., & Indrawati (2024). Impact of different food-grade protein extraction methods on the proteomic profile and potential allergenicity of Spirulina (Arthrospira platensis). Algal Research, 84, 103765. doi: 10.1016/j.algal.2024.103765

Irvani, N., Leong, S. Y., Carne, A., Agyei, D., & Oey, I. (2024). Impact of high-speed homogenisation followed by pH treatment of Arthrospira platensis on protein accessibility and in vitro protein digestibility. Food & Bioprocess Technology, 17, 2421-2434. doi: 10.1007/s11947-023-03269-w

Jelley, L., Aminisani, N., O'Neill, M., Jennings, T., Douglas, J., Utekar, S., … Welch, D., … SHIVERS Investigation Team, de Ligt, J., Winter, D., French, N., … Geoghegan, J. L. (2024). Tracing household transmission of SARS-CoV-2 in New Zealand using genomics. npj Viruses, 2, 21. doi: 10.1038/s44298-024-00032-6

Jeunen, G.-J., Mills, S., Lamare, M., Duffy, G. A., Knapp, M., Stanton, J.-A. L., … Treece, J., Ferreira, S., Durán-Vinet, B., Zavodna, M., & Gemmell, N. J. (2024). Unlocking Antarctic molecular time-capsules: Recovering historical environmental DNA from museum-preserved sponges. Molecular Ecology Resources. Advance online publication. doi: 10.1111/1755-0998.14001

Jo, J., Upadhyay, T., Woods, E. C., Park, K. W., Pedowitz, N. J., Jaworek-Korjakowska, J., … Fellner, M., & Bogyo, M. (2024). Development of oxadiazolone activity-based probes targeting FphE for specific detection of Staphylococcus aureus infections. Journal of the American Chemical Society. Advance online publication. doi: 10.1021/jacs.3c13974

Jones, L. M., & Legge, M. (2024). Can the use of triglyceride to glucose and triglyceride to high density lipoprotein ratios indicate metabolic syndrome in the spinal cord injured male? New Zealand Journal of Medical Laboratory Science, 78(1), 31-33.

Karayol, R., Borroto, M. C., Haghshenas, S., Namasivayam, A., Reilly, J., Levy, M. A., … Mulligan, M. R., Bicknell, L. S., Poke, G., … Yordanova, R. (2024). MSL2 variants lead to a neurodevelopmental syndrome with lack of coordination, epilepsy, specific dysmorphisms, and a distinct episignature. American Journal of Human Genetics. Advance online publication. doi: 10.1016/j.ajhg.2024.05.001

Leite, D. J., Schönauer, A., Blakeley, G., Harper, A., Garcia‑Castro, H., Baudouin‑Gonzalez, L., … Kenny, N. J., … McGregor, A. P. (2024). An atlas of spider development at single-cell resolution provides new insights into arthropod embryogenesis. EvoDevo, 15, 5. doi: 10.1186/s13227-024-00224-4

Li, S., Carne, A., & Bekhit, A. E.-D. A. (2024). Investigation of antioxidant activity of protein hydrolysates from New Zealand commercial low-grade fish roes. Marine Drugs, 22, 364. doi: 10.3390/md22080364

Lyons, N., Wu, W., Jin, Y., Lamont, I. L., & Pletzer, D. (2024). Using host-mimicking conditions and a murine cutaneous abscess model to identify synergistic antibiotic combinations effective against Pseudomonas aeruginosa. Frontiers in Cellular & Infection Microbiology, 14, 1352339. doi: 10.3389/fcimb.2024.1352339

Major, T. J., Takei, R., Matsuo, H., Leask, M. P., Sumpter, N. A., Topless, R. K., … Cadzow, M. J., Phipps-Green, A. J., … McCormick, S. P. A., Bixley, M. J., … Stamp, L. K., … Merriman, T. R. (2024). A genome-wide association analysis reveals new pathogenic pathways in gout. Nature Genetics. Advance online publication. doi: 10.1038/s41588-024-01921-5

McAlpine, J. M. R. B., Zhu, G., Pudjihartono, N., Teyra, J., Currie, M. J., Tillett, Z. D., Dobson, R. C. J., … Day, C. L., & Middleton, A. J. (2024). Structural and biophysical characterisation of ubiquitin variants that inhibit the ubiquitin conjugating enzyme Ube2d2. FEBS Journal. Advance online publication. doi: 10.1111/febs.17311

McCallum-Loudeac, J., Moody, E., Williams, J., Johnstone, G., Sircombe, K. J., Clarkson, A. N., & Wilson, M. J. (2024). Deletion of a conserved genomic region associated with adolescent idiopathic scoliosis leads to vertebral rotation in mice. Human Molecular Genetics. Advance online publication. doi: 10.1093/hmg/ddae011

McDonald, K. O., Lyons, N. M. A., Gray, L. K. C., Xu, J. B., Schoderboeck, L., Hughes, S. M., & Basak, I. (2024). Transcription factor-mediated generation of dopaminergic neurons from human iPSCs: A comparison of methods. Cells, 13(12), 1016. doi: 10.3390/cells13121016

McSweeney, A. M., Eruera, A.-R., McKenzie-Goldsmith, G. M., Bouwer, J. C., Brown, S. H. J., Stubbing, L. A., … Bostina, M., Krause, K. L., & Ward, V. K. (2024). Activity and cryo-EM structure of the polymerase domain of the human norovirus ProPol precursor. Journal of Virology, 98(11), e01193-24. doi: 10.1128/jvi.01193-24

Moore, M. K., Jones, G. T., McCormick, S., Williams, M. J. A., & Coffey, S. (2024). Association between lipoprotein(a), LPA genetic risk score, aortic valve disease, and subsequent major adverse cardiovascular events. European Journal of Preventive Cardiology. Advance online publication. doi: 10.1093/eurjpc/zwae100

Moreira, S. M., Chyou, T.-y., Wade, J. T., & Brown, C. M. (2024). Diversification of the Rho transcription termination factor in bacteria. Nucleic Acids Research. Advance online publication. doi: 10.1093/nar/gkae582

Newton-Vesty, M. C., Currie, M. J., Davies, J. S., Panjikar, S., Sethi, A., Whitten, A. E., … Jamieson, S. A., Mace, P. D., … Dobson, R. C. J. (2024). On the function of TRAP substrate-binding proteins: The isethionate-specific binding protein IseP. Biochemical Journal. Advance online publication. doi: 10.1042/bcj20240540

Ni, S., McCulloch, G. A., Kroos, G. C., King, T. M., Dutoit, L., Foster, B. J., Hema, K., Jandt, J. M., Peng, M., Dearden, P. K., & Waters, J. M. (2024). Human-driven evolution of color in a stonefly mimic. Science, 386(6270), 453-458. doi: 10.1126/science.ado5331

Nilsen, A. R., Plett, J. M., May, T. W., Lebel, T., Brown, C. M., Catcheside, D. E. A., & Orlovich, D. A. (2024). Navigating the labyrinth: Searching for mechanistic clues to explain the evolution of sequestrate Agaricales with labyrinthine internal chambers. Fungal Biology Reviews, 49, 100380. doi: 10.1016/j.fbr.2024.100380

Ohline, S. M., Logan, B. J., Hughes, S. M., & Abraham, W. C. (2024). Egr1 expression is correlated with synaptic activity but not intrinsic membrane properties in mouse adult-born dentate granule cells. Hippocampus. Advance online publication. doi: 10.1002/hipo.23644

Pinkney, H. R., Ross, C. R., Hodgson, T. O., Pattison, S. T., & Diermeier, S. D. (2024). Discovery of prognostic lncRNAs in colorectal cancer using spatial transcriptomics. npj Precision Oncology, 8, 230. doi: 10.1038/s41698-024-00728-1

Putha, L., Kok, L. K., Fellner, M., Rutledge, M. T., Gamble, A. B., Wilbanks, S. M., Vernall, A. J., & Tyndall, J. D. A. (2024). Covalent isothiocyanate inhibitors of macrophage migration inhibitory factor as potential colorectal cancer treatments. ChemMedChem. Advance online publication. doi: 10.1002/cmdc.202400394

Rajchakit, U., Lamba, S., Wang, K., Lyons, N., Lu, J., Swift, S., Pletzer, D., & Sarojini, V. (2024). Size-controlled synthesis of gold nanoparticles tethering antimicrobial peptides with potent broad-spectrum antimicrobial and antibiofilm activities. Molecular Pharmaceutics. Advance online publication. doi: 10.1021/acs.molpharmaceut.3c00734

Randall, G. T., Grant-Mackie, E. S., Chunkath, S., Williams, E. T., Middleditch, M. J., Tao, M., … Bashiri, G. (2024). A stable dehydratase complex catalyzes the formation of dehydrated amino acids in a class V lanthipeptide. ACS Chemical Biology. Advance online publication. doi: 10.1021/acschembio.4c00637

Ray, S., Sullivan, R., Ruegg, M., Gimenez, G., Horsfield, J., Poke, G., … Bicknell, L. (2024). The spliceosomal factor CRNKL1 is a novel disease gene required for brain development. European Journal of Human Genetics, 32(Suppl. 2), C04.1. doi: 10.1038/s41431-024-01732-6

Sandal, P., Jong, C. J., Merrill, R. A., Kollman, G. J., Paden, A. H., Bend, E. G., … Bicknell, L. S., & Strack, S. (2024). De novo missense variants in the PP2A regulatory subunit PPP2R2B in a neurodevelopmental syndrome: Potential links to mitochondrial dynamics and spinocerebellar ataxias. Human Molecular Genetics, ddae166. Advance online publication. doi: 10.1093/hmg/ddae166

Santodomingo, N., Díez-Vives, C., Kenny, N. J., Cárdenas, P., Balcells, L., Moles, J., … Riesgo, A. (2024). Integrative taxonomy of Tethya: Description of four new species based on morphology, phylogeny and microbiome diversity. Systematics & Biodiversity, 22(1), 2383341. doi: 10.1080/14772000.2024.2383341

Saseendran Nair, S., Kleffmann, T., Smith, B., Morris, V., Göbl, C., Pletzer, D., & Fellner, M. (2024). Comparative lipidomics profiles of planktonic and biofilms of methicillin-resistant and -susceptible Staphylococcus aureus. Analytical Biochemistry, 698, 115746. doi: 10.1016/j.ab.2024.115746

Schoch, K., Ruegg, M. S. G., Fellows, B. J., Cao, J., Uhrig, S., Einsele-Scholz, S., … Hawarden, S. R. A., … Brown, C. M., … Bicknell, L. S. (2024). A second hotspot for pathogenic exon-skipping variants in CDC45. European Journal of Human Genetics. Advance online publication. doi: 10.1038/s41431-024-01583-1

Seitz, C., Ahn, S.-H., Wei, H., Kyte, M., Cook, G. M., Krause, K. L., & McCammon, J. A. (2024). Targeting tuberculosis: Novel scaffolds for inhibiting cytochrome bd oxidase. Journal of Chemical Information & Modeling. Advance online publication. doi: 10.1021/acs.jcim.4c00344

Seo, S., Parr-Brownlie, L. C., Wicky, H. E., Bilkey, D. K., Hughes, S. M., & Oorschot, D. E. (2024). A risk factor for attention deficit hyperactivity disorder induces marked long-term anatomical changes at GABAergic-dopaminergic synapses in the rat ventral tegmental area. International Journal of Molecular Sciences, 25, 12970. doi: 10.3390/ijms252312970

Shafaei Pishabad, Z., & Ledgerwood, E. C. (2024). The Y49H cytochrome c variant enhances megakaryocytic maturation of K-562 cells. Biochimica et Biophysica Acta: Molecular Basis of Disease, 1870(5), 167134. doi: 10.1016/j.bbadis.2024.167134

Sheridan, K. J., Eaton-Rye, J. J., & Summerfield, T. C. (2024). Mutagenesis of Ile184 in the cd-loop of the photosystem II D1 protein modifies acceptor-side function via spontaneous mutation of D1-His252 in Synechocystis sp. PCC 6803. Biochemical & Biophysical Research Communications, 702, 149595. doi: 10.1016/j.bbrc.2024.149595

Sitter, L., Schoof, M., Glare, T. R., Cox, M. P., Fineran, P. C., Gardner, P. P., & Hurst, M. R. H. (2024). Serratia-based toxin cluster elements are associated with a type I fimbria. MicrobiologyOpen, 13, e1395. doi: 10.1002/mbo3.1395

Sreeram, A., Stroobant, E. E., Laszkowska, M., Guilford, P., Shimada, S., Nishimura, M., … Strong, V. E. (2024). Disappearing signet ring cell adenocarcinoma in gastric cancer patients. Annals of Surgical Oncology. Advance online publication. doi: 10.1245/s10434-024-16117-8

Swamynathan, M. M., Kuang, S., Watrud, K. E., Doherty, M. R., Gineste, C., Mathew, G., … Diermeier, S. D., … Trotman, L. C. (2024). Dietary pro-oxidant therapy by a vitamin K precursor targets PI 3-kinase VPS34 function. Science, 386, eadk9167. doi: 10.1126/science.adk9167

Swamynathan, M. M., Mathew, G., Aziz, A. A., Gordon, C., Hillowe, A., Wang, H., … Diermeier, S. D., … Trotman, L. C. (2024). FABP5 inhibition against PTEN-mutant therapy resistant prostate cancer. Cancers, 16, 60. doi: 10.3390/cancers16010060

Szakats, S., McAtamney, A., & Wilson, M. J. (2024). Identification of novel microRNAs in the embryonic mouse brain using deep sequencing. Molecular & Cellular Biochemistry, 479, 297-311. doi: 10.1007/s11010-023-04730-2

Wang, Q., McCormick, S., Leask, M. P., Watson, H., O'Sullivan, C., Krebs, J. D., Hall, R., Whitfield, P., Merry, T. L., Murphy, R., & Shepherd, P. R. (2024). A Polynesian-specific SLC22A3 variant associates with low plasma lipoprotein(a) concentrations independent of apo(a) isoform size in men [Brief report]. Bioscience Reports, 44(7), BSR20240403. doi: 10.1042/BSR20240403

Yin, S., Duan, M., Fellner, M., Wang, Z., Lv, C., Zang, J., … Zhang, T. (2024). pH/Glucose dual-responsive protein-based hydrogels with enhanced adhesive and antibacterial properties for diabetic wound healing. Food Innovation & Advances, 3(4), 332-343. doi: 10.48130/fia-0024-0032

Achilleos, K., & Smith, A. M. (2023). Proof of concept for measuring growth of shelf marine calcifiers: 'A Bryozoan odyssey'. Marine & Freshwater Research, 74(14), 1262-1273. doi: 10.1071/MF23114

Adhikari, P. B., Zhu, S., Liu, X., Huang, C., Xie, L., Wu, X., … Peters, B., Brownfield, L., … Kasahara, R. D. (2023). Discovery of a cis-regulatory element SaeM involved in dynamic regulation of synergid-specific MYB98. Frontiers in Plant Science, 14, 1177058. doi: 10.3389/fpls.2023.1177058

Ahmmed, M. K., Hachem, M., Ahmmed, F., Rashidinejad, A., Oz, F., Bekhit, A. A., Carne, A., & Bekhit, A. E.-D. A. (2023). Marine fish-derived lysophosphatidylcholine: Properties, extraction, quantification, and brain health application. Molecules, 28(7), 3088. doi: 10.3390/molecules28073088

Bailey, S., Guhlin, J., Senanayake, D. S., Scherer, P., Brekke, P., Ewen, J. G., Santure, A. W., & Whibley, A. (2023). Assembly of female and male hihi genomes (stitchbird; Notiomystis cincta) enables characterization of the W chromosome and resources for conservation genomics. Molecular Ecology Resources. Advance online publication. doi: 10.1111/1755-0998.13823

Barzegar-Fallah, A., Alimoradi, H., Dunlop, J. L., Torbati, E., & Baird, S. K. (2023). Serotonin type-3 receptor antagonists selectively kill melanoma cells through classical apoptosis, microtubule depolymerisation, ERK activation, and NF-κB downregulation. Cell Biology & Toxicology, 39, 1119-1135. doi: 10.1007/s10565-021-09667-0

Basak, I., Harfoot, R., Palmer, J. E., Kumar, A., Quiñones‑Mateu, M. E., Schweitzer, L., & Hughes, S. M. (2023). Neuroproteomic analysis after SARS-CoV-2 infection reveals overrepresented neurodegeneration pathways and disrupted metabolic pathways. Biomolecules, 13(11), 1597. doi: 10.3390/biom13111597

Brandon, R., Jiang, Y., Yeu, R. Q., Tweedie-Cullen, R., Smallman, K., Doherty, G., … Leask, M. P., Merriman, T. R., … Murphy, R. (2023). Stratified glucose-lowering response to vildagliptin and pioglitazone by obesity and hypertriglyceridemia in a randomized crossover trial. Frontiers in Endocrinology, 13, 1091421. doi: 10.3389/fendo.2022.1091421

Brůna, T., Li, H., Guhlin, J., Honsel, D., Herbold, S., Stanke, M., … Hoff, K. J. (2023). GALBA: Genome annotation with miniprot and AUGUSTUS. BMC Bioinformatics, 24, 327. doi: 10.1186/s12859-023-05449-z

Bunga, S. J., Ahmmed, M. K., Lawley, B., Carne, A., & Bekhit, A. E.-D. A. (2023). Physicochemical, biochemical and microbiological changes of jeotgal-like fermented Chinook salmon (Oncorhynchus tshawytscha) roe. Food Chemistry, 398, 133880. doi: 10.1016/j.foodchem.2022.133880

Bunga, S., Ahmmed, M. K., Carne, A., & Bekhit, A. E.-D. A. (2023). Positional distribution of fatty acids in processed Chinook salmon roe lipids determined by ¹³C magnetic resonance spectroscopy (NMR). Molecules, 28, 454. doi: 10.3390/molecules28010454

Carlson, J. C., Krishnan, M., Rosenthal, S. L., Russell, E. M., Zhang, J. Z., Hawley, N. L., Moors, J., … Stamp, L. K., … Merriman, T. R., … Minster, R. L. (2023). A stop-gain variant in BTNL9 is associated with atherogenic lipid profiles. Human Genetics & Genomic Advances, 4, 100155. doi: 10.1016/j.xhgg.2022.100155

Cooper, H. B., Krause, K. L., & Gardner, P. P. (2023). Finding priority bacterial ribosomes for future structural and antimicrobial research based upon global RNA and protein sequence analysis. PeerJ, 11, e14969. doi: 10.7717/peerj.14969

Cullen, G., Gilligan, J. B., Guhlin, J. G., & Dearden, P. K. (2023). Germline progenitors and oocyte production in the honeybee queen ovary. Genetics, 225(1), iyad138. doi: 10.1093/genetics/iyad138

Das, A., Foglizzo, M., Padala, P., Zhu, J., & Day, C. L. (2023). TRAF trimers form immune signalling networks via RING domain dimerization. FEBS Letters, 597(9), 1213-1224. doi: 10.1002/1873-3468.14530

Davies, J. S., Currie, M. J., North, R. A., Scalise, M., Wright, J. D., Copping, J. M., … Jamieson, S. A., … Mace, P. D., & Dobson, R. C. J. (2023). Structure and mechanism of a tripartite ATP-independent periplasmic TRAP transporter. Nature Communications, 14(1), 1120. doi: 10.1038/s41467-023-36590-1

Digby, A., Eason, D., Catalina, A., Lierz, M., Galla, S., Urban, L., Le Lec, M. F., Guhlin, J., Steeves, T. E., Dearden, P. K., … Kākāpō Recovery Team. (2023). Hidden impacts of conservation management on fertility of the critically endangered kākāpō. PeerJ, 11, e14675. doi: 10.7717/peerj.14675

Dong, Y., Gupta, S., Wargent, J. J., Putterill, J., Macknight, R. C., Gechev, T. S., … Dijkwel, P. P. (2023). Comparative transcriptomics of multi-stress responses in Pachycladon cheesemanii and Arabidopsis thaliana. International Journal of Molecular Sciences, 24, 11323. doi: 10.3390/ijms241411323

Elsaid, K., Merriman, T. R., Rossitto, L.-A., Liu-Bryan, R., Karsh, J., Phipps-Green, A., … Cadzow, M., … Terkeltaub, R. (2023). Amplification of inflammation by lubricin deficiency implicated in incident, erosive gout independent of hyperuricemia. Arthritis & Rheumatology, 75(5), 794-805. doi: 10.1002/art.42413

Erdmann, M. B., Gardner, P. P., & Lamont, I. L. (2023). The PitA protein contributes to colistin susceptibility in Pseudomonas aeruginosa. PLoS ONE, 18(10), e0292818. doi: 10.1371/journal.pone.0292818

Eruera, A.-R., McSweeney, A. M., McKenzie-Goldsmith, G. M., Opel-Reading, H. K., Thomas, S. X., Campbell, A. C., … Ward, V. K., & Krause, K. L. (2023). Crystal structure of inhibitor-bound GII.4 Sydney 2012 norovirus 3C-like protease. Viruses, 15(11), 2202. doi: 10.3390/v15112202

Fellner, M., Walsh, A., Dela Ahator, S., Aftab, N., Sutherland, B., Tan, E. W., … Lentz, C. S. (2023). Biochemical and cellular characterization of the function of fluorophosphonate-binding hydrolase H (FphH) in Staphylococcus aureus support a role in bacterial stress response. ACS Infectious Diseases, 9(11), 2119-2132. doi: 10.1021/acsinfecdis.3c00246

Fitzgerald, S., Blenkiron, C., Stephens, R., Mathy, J. A., Somers-Edgar, T., Rolfe, G., … Jackson, C., Eccles, M., … Rodger, E., … Guilford, P., … Print, C. G. (2023). Dynamic ctDNA mutational complexity in patients with melanoma receiving immunotherapy. Molecular Diagnosis & Therapy, 27, 537-550. doi: 10.1007/s40291-023-00651-4

Greenhough, H., Vignier, J., Peychers, C., Smith, K. F., Kenny, N. J., & Rolton, A. (2023). Exposure to Alexandrium spp. impairs the development of green-lipped mussel (Perna canaliculus) embryos and larvae. Harmful Algae, 127, 102465. doi: 10.1016/j.hal.2023.102465

Guhlin, J., Le Lec, M. F., Wold, J., Koot, E., Winter, D., Biggs, P. J., … Urban, L., Foster, Y., … Robertson, F. E., Robertson, B. C., Gemmell, N. J., … Dearden, P. K. (2023). Species-wide genomics of kākāpō provides tools to accelerate recovery. Nature Ecology & Evolution. Advance online publication. doi: 10.1038/s41559-023-02165-y

Han, L., Li, R., Lu, J., Ren, W., Ning, C., Pang, J., … Merriman, T. R., & Li, C. (2023). Association of the quantity, duration, and type of alcohol consumption on the development of gouty tophi. Arthritis Care & Research, 75(5), 1079-1087. doi: 10.1002/acr.24968

Hao, F., Liu, X., Zhou, B., Tian, Z., Zhou, L., Zong, H., … Macknight, R. C., … Cai, J. (2023). Chromosome-level genomes of three key Allium crops and their trait evolution. Nature Genetics, 55, 1976-1986. doi: 10.1038/s41588-023-01546-0

Harris, C., Hall, M., Arrowfield, R., Herridge, R., Eady, C., Macknight, R., & Brownfield, L. (2023). Assessing inbreeding in perennial ryegrass (Lolium perenne) as a step towards F1 hybrid breeding. Plant Breeding, 142, 518-526. doi: 10.1111/pbr.13099

Inwood, S. N., Skelly, J., Guhlin, J. G., Harrop, T. W. R., Goldson, S. L., & Dearden, P. K. (2023). Chromosome-level genome assemblies of two parasitoid biocontrol wasps reveal the parthenogenesis mechanism and an associated novel virus. BMC Genomics, 24, 440. doi: 10.1186/s12864-023-09538-4

Inwood, S., Harrop, T. W. R., & Dearden, P. K. (2023). The venom composition and parthenogenesis mechanism of the parasitoid wasp Microctonus hyperodae, a declining biocontrol agent. Insect Biochemistry & Molecular Biology, 153, 103897. doi: 10.1016/j.ibmb.2022.103897

Jeunen, G.-J., Cane, J. S., Ferreira, S., Strano, F., von Ammon, U., Cross, H., Day, R., … Ellis, K., Urban, L., Pearson, N., Olmedo-Rojas, P., Kardailsky, A., Gemmell, N. J., & Lamare, M. (2023). Assessing the utility of marine filter feeders for environmental DNA (eDNA) biodiversity monitoring. Molecular Ecology Resources, 23, 771-786. doi: 10.1111/1755-0998.13754

Kavle, R. R., Nolan, P. J., Bekhit, A. E.-D. A., Carne, A., Morton, J. D., & Agyei, D. (2023). Physicochemical characteristics, techno-functionalities, and amino acid profile of Prionoplus reticularis (Huhu) larvae and pupae protein extracts. Foods, 12, 417. doi: 10.3390/foods12020417

Kavle, R. R., Nolan, P. J., Carne, A., Agyei, D., Morton, J. D., & Bekhit, A. E.-D. A. (2023). Earth worming: An evaluation of earthworm (Eisenia andrei) as an alternative food source. Foods, 12, 1948. doi: 10.3390/foods12101948

Kavle, R. R., Pritchard, E. T. M., Carne, A., Bekhit, A. E.-D. A., & Agyei, D. (2023). Fatty acid profile, mineral composition, and health implications of consuming dried sago grubs (Rhynchophorus ferrugineus). Applied Sciences, 13, 363. doi: 10.3390/app13010363

Kavle, R. R., Pritchard, E. T. M., Carne, A., Bekhit, A. E.-D. A., Morton, J. D., & Agyei, D. (2023). Nutritional composition and techno-functional properties of sago palm weevil (Rhynchophorus ferrugineus) larvae protein extract. Journal of Asia-Pacific Entomology, 26, 102086. doi: 10.1016/j.aspen.2023.102086

Keighley, L. M., Lynch-Sutherland, C. F., Almomani, S. N., Eccles, M. R., & Macaulay, E. C. (2023). Unveiling the hidden players: The crucial role of transposable elements in the placenta and their potential contribution to pre-eclampsia. Placenta. Advance online publication. doi: 10.1016/j.placenta.2023.05.017

Khaing, E. P., & Eaton-Rye, J. J. (2023). Lys264 of the D2 protein performs a dual role in Photosystem II modifying assembly and electron transfer through the quinone–iron acceptor complex. Biochemistry, 62, 2738-2750. doi: 10.1021/acs.biochem.3c00240

Krishnan, M., Phipps-Green, A., Russell, E. M., Major, T. J., Cadzow, M., Stamp, L. K., Dalbeth, N., … Merriman, T. R., … Weeks, D. E. (2023). Association of rs9939609 in FTO with BMI among Polynesian peoples living in Aotearoa New Zealand and other Pacific nations. Journal of Human Genetics, 68, 463-468. doi: 10.1038/s10038-023-01141-5

Le Lievre, L., Padinjare Chakkatu, S., Varghese, S., Day, R. C., Pilkington, S. M., & Brownfield, L. (2023). RNA-seq analysis of synchronized developing pollen isolated from a single anther. Frontiers in Plant Science, 14, 1121570. doi: 10.3389/fpls.2023.1121570

Lin, K., McCormick, N., Yokose, C., Joshi, A. D., Lu, N., Curhan, G. C., Merriman, T. R., … Choi, H. K. (2023). Interactions between genetic risk and diet influencing risk of incident female gout: Discovery and replication analysis of four prospective cohorts. Arthritis & Rheumatology, 75(6), 1028-1038. doi: 10.1002/art.42419

Longmuir, K., Park, J., Fitzgerald, R., Legge, M., & Shore, C. (2023). Hope: Valuing lives and persons with degenerative conditions: Duchenne muscular dystrophy. Sites, 20(1), 1-26. doi: 10.11157/sites-id526

Lovegrove, M. R., Dearden, P. K., & Duncan, E. J. (2023). Honeybee queen mandibular pheromone induces a starvation response in Drosophila melanogaster. Insect Biochemistry & Molecular Biology, 154, 103908. doi: 10.1016/j.ibmb.2023.103908

Mandal, A. K., Leask, M. P., Sumpter, N. A., Choi, H. K., Merriman, T. R., & Mount, D. B. (2023). Genetic and physiological effects of insulin-like growth factor-1 (IGF-1) on human urate homeostasis. Journal of the American Society of Nephrology, 34(3), 451-466. doi: 10.1681/ASN.0000000000000054

Martin, L. W., Gray, A. R., Brockway, B., & Lamont, I. L. (2023). Pseudomonas aeruginosa is oxygen-deprived during infection in cystic fibrosis lungs, reducing the effectiveness of antibiotics. FEMS Microbiology Letters, 370, fnad076. doi: 10.1093/femsle/fnad076

Maurin, M., Ranjouri, M., Megino-Luque, C., Newberg, J. Y., Du, D., Martin, K., … Black, M. A., & Mann, K. M. (2023). RBFOX2 deregulation promotes pancreatic cancer progression and metastasis through alternative splicing. Nature Communications, 14, 8444. doi: 10.1038/s41467-023-44126-w

McGuinness, C. F., Black, M. A., & Dunbier, A. K. (2023). Restriction site associated DNA sequencing for tumour mutation burden estimation and mutation signature analysis. Cancer Medicine. Advance online publication. doi: 10.1002/cam4.6711

Middleton, A. J., Barzak, F. M., Fokkens, T. J., Nguyen, K., & Day, C. L. (2023). Zinc finger 1 of the RING E3 ligase, RNF125, interacts with the E2 to enhance ubiquitylation. Structure, 31(10), 1208-1219. doi: 10.1016/j.str.2023.07.007

Moors, J., Krishnan, M., Sumpter, N., Takei, R., Bixley, M., Cadzow, M., Major, T. J., Phipps Green, A., Topless, R., Merriman, M., Rutledge, M., Morgan, B., … Stamp, L., Taumoepeau, M., … Wilcox, P., … McCormick, S., … Merriman, T. R., & Leask, M. (2023). A Polynesian-specific missense CETP variant alters the lipid profile. Human Genetics & Genomic Advances, 4, 100204. doi: 10.1016/j.xhgg.2023.100204

Moravec, J. C., Lanfear, R., Spector, D. L., Diermeier, S. D., & Gavryushkin, A. (2023). Testing for phylogenetic signal in single-cell RNA-seq data. Journal of Computational Biology, 30(4), 518-537. doi: 10.1089/cmb.2022.0357

Morgan-Richards, M., Marshall, C. J., Biggs, P. J., & Trewick, S. A. (2023). Insect freeze-tolerance Downunder: The microbial connection. Insects, 14(1), 89. doi: 10.3390/insects14010089

Mortensen, A. N., Jochym, M., Dearden, P. K., & Sainsbury, J. P. (2023). Old strategies as modern solutions, shook swarming reduced Varroa destructor infestation rates of managed honey bee, Apis mellifera, colonies. Journal of Apicultural Research. Advance online publication. doi: 10.1080/00218839.2023.2243044

Mungure, T. E., Farouk, M. M., Carne, A., Staincliffe, M., Stewart, I., Jowett, T., … Bekhit, A. E.-D. A. (2023). Understanding the influence of PEF treatment on minerals and lipid oxidation of wet- and dry-aged venison M. longissimus dorsi muscle. Innovative Food Science & Emerging Technologies, 83, 103238. doi: 10.1016/j.ifset.2022.103238

Nicholls, C., Chyou, T.-y., & Nishtala, P. S. (2023). Analysis of the adverse nervous system and gastrointestinal events associated with solifenacin in older adults using the US FDA adverse event reporting system. International Journal of Risk & Safety in Medicine, 34(1), 63-73. doi: 10.3233/jrs-210054

Orogun, L., Chyou, T.-y., & Nishtala, P. S. (2023). Acute renal failure and cardiac arrhythmias associated with remdesivir use in patients with COVID-19 infections: Analysis using the US FDA adverse event reporting system. International Journal of Risk & Safety in Medicine, 34, 87-99. doi: 10.3233/jrs-220009

Peppercorn, K., Edgar, C. D., Kleffmann, T., & Tate, W. P. (2023). A pilot study on the immune cell proteome of long COVID patients shows changes to physiological pathways similar to those in myalgic encephalomyelitis/chronic fatigue syndrome. Scientific Reports, 13(1), 22068. doi: 10.1038/s41598-023-49402-9

Peppercorn, K., Kleffmann, T., Hughes, S. M., & Tate, W. P. (2023). Secreted amyloid precursor protein alpha (sAPPα) regulates the cellular proteome and secretome of mouse primary astrocytes. International Journal of Molecular Sciences, 24, 7165. doi: 10.3390/ijms24087165

Ramsay, K. A., Rehman, A., Taylor Wardell, S., Martin, L. W., Bell, S. C., Patrick, W. M., … Lamont, I. L. (2023). Ceftazidime resistance in Pseudomonas aeruginosa is multigenic and complex. PLoS ONE, 18(5), e0285856. doi: 10.1371/journal.pone.0285856

Sheridan, K. J., Brown, T. J., Eaton-Rye, J. J., & Summerfield, T. C. (2023). Expression of the far-red D1 protein or introduction of conserved far-red D1 residues into Synechocystis sp. PCC 6803 impairs Photosystem II. Physiologia Plantarum, 175, e13997. doi: 10.1111/ppl.13997

Siddiqui, H., Deo, N., Rutledge, M. T., Williams, M. J. A., Redpath, G. M. I., & McCormick, S. P. A. (2023). Plasminogen receptors promote lipoprotein(a) uptake by enhancing surface binding and facilitating macropinocytosis. Arteriosclerosis, Thrombosis, & Vascular Biology. Advance online publication. doi: 10.1161/atvbaha.123.319344

Smith-Diaz, N., Stocker, S. L., Stamp, L. K., Dalbeth, N., Phipps-Green, A. J., Merriman, T. R., & Wright, D. F. B. (2023). An allopurinol adherence tool using plasma oxypurinol concentrations. British Journal of Clinical Pharmacology, 89, 1956-1964. doi: 10.1111/bcp.15516

Soni, A., Nishtala, R., Ng, S., Barnett, R., Chyou, T.-y., Cavill, C., & Sengupta, R. (2023). The natural history of chronic widespread pain in patients with axial spondyloarthritis: A cohort study with clinical and self-tracking data. Rheumatology, 62, 2444-2452. doi: 10.1093/rheumatology/keac679

Sumpter, N. A., Takei, R., Cadzow, M., Topless, R. K. G., Phipps-Green, A. J., Murphy, R., … Major, T. J., Stamp, L. K., … Leask, M. P., … Merriman, T. R. (2023). Association of gout polygenic risk score with age at disease onset and tophaceous disease in European and Polynesian men with gout. Arthritis & Rheumatology, 75(5), 816-825. doi: 10.1002/art.42393

Szakats, S., McAtamney, A., Cross, H., & Wilson, M. J. (2023). Sex-biased gene and microRNA expression in the developing mouse brain is associated with neurodevelopmental functions and neurological phenotypes. Biology of Sex Differences, 14, 57. doi: 10.1186/s13293-023-00538-3

Tate, W. P., Walker, M. O. M., Peppercorn, K., Blair, A. L. H., & Edgar, C. D. (2023). Towards a better understanding of the complexities of myalgic encephalomyelitis/chronic fatigue syndrome and long COVID [Review]. International Journal of Molecular Sciences, 24(6), 5124. doi: 10.3390/ijms24065124

Thacharodi, A., & Lamont, I. L. (2023). Gene-gene interactions reduce aminoglycoside susceptibility of Pseudomonas aeruginosa through efflux pump-dependent and -independent mechanisms. Antibiotics, 12, 152. doi: 10.3390/antibiotics12010152

Toomata, Z., Leask, M., Krishnan, M., Cadzow, M., Dalbeth, N., Stamp, L. K., … Merriman, T., Wilcox, P., … Murphy, R. (2023). Genetic testing for misclassified monogenic diabetes in Māori and Pacific peoples in Aotearoa New Zealand with early-onset type 2 diabetes. Frontiers in Endocrinology, 14, 1174699. doi: 10.3389/fendo.2023.1174699

Truchado-García, M., Perry, K. J., Cavodeassi, F., Kenny, N. J., Henry, J. Q., & Grande, C. (2023). A small change with a twist ending: A single residue in EGF-CFC drives bilaterian asymmetry. Molecular Biology & Evolution, 40(2), msac270. doi: 10.1093/molbev/msac270

Walker, M. O. M., Peppercorn, K., Kleffmann, T., Edgar, C. D., & Tate, W. P. (2023). An understanding of the immune dysfunction in susceptible people who develop the post-viral fatigue syndromes Myalgic Encephalomyelitis/Chronic Fatigue Syndrome and Long COVID. Medical Research Archives, 11(7). doi: 10.18103/mra.v11i7.1.4083

Wang, M., Li, R., Qi, H., Pang, L., Cui, L., Liu, Z., … Merriman, T. R., … Li, C. (2023). Metabolomics and machine learning identify metabolic differences and potential biomarkers for frequent versus infrequent gout flares. Arthritis & Rheumatology, 75(12), 2252-2264. doi: 10.1002/art.42635

Wei, X., Gao, J., Xu, C., Pan, X., Jin, Y., Bai, F., … Lamont, I. L., Pletzer, D., & Wu, W. (2023). Murepavadin induces envelope stress response and enhances the killing efficacies of β-lactam antibiotics by impairing the outer membrane integrity of Pseudomonas aeruginosa. Microbiology Spectrum, 11(5). doi: 10.1128/spectrum.01257-23

West, A. G., Digby, A., Santure, A. W., Guhlin, J. G., Dearden, P., Kākāpō Recovery Team, … Urban, L. (2023). Capturing species-wide diversity of the gut microbiota and its relationship with genomic variation in the critically endangered kākāpō. Molecular Ecology, 32(15), 4224-4241. doi: 10.1111/mec.16999

Wiles, A. K., Mehta, S., Millier, M., Woolley, A. G., Li, K., Parker, K., Kazantseva, M., Wilson, M., Young, K., Bowie, S., Ray, S., Slatter, T. L., Stamp, L. K., Hessian, P. A., & Braithwaite, A. W. (2023). Activated CD90/Thy-1 fibroblasts co-express the Δ133p53β isoform and are associated with highly inflamed rheumatoid arthritis. Arthritis Research & Therapy, 25, 62. doi: 10.1186/s13075-023-03040-8

Yang, Z., Guarracino, A., Biggs, P. J., Black, M. A., Ismail, N., Wold, J. R., Merriman, T. R., … de Ligt, J. (2023). Pangenome graphs in infectious disease: A comprehensive genetic variation analysis of Neisseria meningitidis leveraging Oxford Nanopore long reads. Frontiers in Genetics, 14, 1225248. doi: 10.3389/fgene.2023.1225248

Yi, J., Kradolfer, D., Brownfield, L., Ma, Y., Piskorz, E., Köhler, C., & Jiang, H. (2023). Meiocyte size is a determining factor for unreduced gamete formation in Arabidopsis thaliana. New Phytologist, 237, 1179-1187. doi: 10.1111/nph.18473

Yokose, C., McCormick, N., Lu, N., Tanikella, S., Lin, K., Joshi, A. D., … Merriman, T., … Choi, H. K. (2023). Trends in prevalence of gout among US Asian adults, 2011-2018. JAMA Network Open, 6(4), e239501. doi: 10.1001/jamanetworkopen.2023.9501

Zawierucha, K., Stec, D., Dearden, P. K., & Shain, D. H. (2023). Two new tardigrade genera from New Zealand’s Southern Alp glaciers display morphological stasis and parallel evolution. Molecular Phylogenetics & Evolution, 178, 107634. doi: 10.1016/j.ympev.2022.107634

Zhang, J. Z., Heinsberg, L. W., Krishnan, M., Hawley, N. L., Major, T. J., Carlson, J. C., … Stamp, L. K., … Merriman, T. R., & Weeks, D. E. (2023). Multivariate analysis of a missense variant in CREBRF reveals associations with measures of adiposity in people of Polynesian ancestries. Genetic Epidemiology, 47, 105-118. doi: 10.1002/gepi.22508

Adhikari, B. R., Sinha, S., Lyons, N., Pletzer, D., Lamont, I., Gordon, K. C., & Das, S. C. (2022). Inhalable ceftazidime-roflumilast powder targeting infection and inflammation: Influence of incorporating roflumilast into ceftazidime-leucine co-amorphous formulation. European Journal of Pharmaceutics & Biopharmaceutics, 180, 260-268. doi: 10.1016/j.ejpb.2022.10.005

Ahmmed, M. K., Carne, A., Tian, H. S., & Bekhit, A. E.-D. A. (2022). The effect of pulsed electric fields on the extracted total lipid yield and the lipidomic profile of hoki roe. Food Chemistry, 384, 132476. doi: 10.1016/j.foodchem.2022.132476

Ahmmed, M. K., Carne, A., Tian, H. S., & Bekhit, A. E.-D. A. (2022). Use of fungal and bacterial protease preparations to enhance extraction of lipid from fish roe: Effect on lipidomic profile of extracted oil. Food Chemistry: X, 16, 100499. doi: 10.1016/j.fochx.2022.100499

Al-Zubaidi, A., Cheung, C.-Y., Cook, G. M., Taiaroa, G., Mizrahi, V., Lott, J. S., & Dawes, S. S. (2022). RNase HI depletion strongly potentiates cell killing by rifampicin in mycobacteria. Antimicrobial Agents & Chemotherapy, 66(10). doi: 10.1128/aac.02091-21

Baker, M. G., Gurney, J., Moreland, N. J., Bennett, J., Oliver, J., Williamson, D. A., Pierse, N., … Merriman, T. R., … Edwards, R., … Thomson, W. M., Zhang, J., & Lennon, D. (2022). Risk factors for acute rheumatic fever: A case-control study. Lancet Regional Health: Western Pacific, 26, 100508. doi: 10.1016/j.lanwpc.2022.100508

Biswas, S., & Eaton-Rye, J. J. (2022). PsbX maintains efficient electron transport in Photosystem II and reduces susceptibility to high light in Synechocystis sp. PCC 6803. Biochimica et Biophysica Acta: Bioenergetics, 1863, 148519. doi: 10.1016/j.bbabio.2021.148519

Bougen-Zhukov, N., Decourtye-Espiard, L., Mitchell, W., Redpath, K., Perkinson, J., Godwin, T., Black, M. A., & Guilford, P. (2022). E-cadherin-deficient cells are sensitive to the multikinase inhibitor dasatinib. Cancers, 14, 1609. doi: 10.3390/cancers14071609

Burnett, A., Ahmmed, M. K., Carne, A., Tian, H. S., Ahmed, I. A. M., Al-Juhaimi, F. Y., & Bekhit, A. E.-D. A. (2022). Effect of pulsed electric fields on the lipidomic profile of lipid extracted from hoki fish male gonad. Foods, 11(4), 610. doi: 10.3390/foods11040610

Careno, D. A., Perez Santangelo, S., Macknight, R. C., & Yanovsky, M. J. (2022). The 5ʹ-3ʹ mRNA decay pathway modulates the plant circadian network in Arabidopsis. Plant & Cell Physiology, 63(11), 1709-1719. doi: 10.1093/pcp/pcac126

Caulton, A., Dodds, K. G., McRae, K. M., Couldrey, C., Horvath, S., & Clarke, S. M. (2022). Development of epigenetic clocks for key ruminant species. Genes, 13, 96. doi: 10.3390/genes13010096

Chinzowu, T., Chyou, T.-Y., & Nishtala, P. S. (2022). Antibacterial-associated acute kidney injury among older adults: A post-marketing surveillance study using the FDA Adverse Events Reporting System. Pharmacoepidemiology & Drug Safety, 31, 1190-1198. doi: 10.1002/pds.5486

Choo, P., Forsman, J. A., Hui, L., Khaing, E. P., Summerfield, T. C., & Eaton-Rye, J. J. (2022). The PsbJ protein is required for photosystem II activity in centers lacking the PsbO and PsbV lumenal subunits. Photosynthesis Research, 151, 103-111. doi: 10.1007/s11120-021-00862-y

Dalbeth, N., Mihov, B., Stewart, A., Gamble, G. D., Merriman, T. R., Mount, D., … Stamp, L. K., & Horne, A. (2022). Effects of elevated serum urate on cardiometabolic and kidney function markers in a randomised clinical trial of inosine supplementation. Scientific Reports, 12(1), 12887. doi: 10.1038/s41598-022-17257-1

Dearborn, J. T., Nelvagal, H. R., Rensing, N. R., Takahashi, K., Hughes, S. M., Wishart, T. M., … Sands, M. S. (2022). Effects of chronic cannabidiol in a mouse model of naturally occurring neuroinflammation, neurodegeneration, and spontaneous seizures. Scientific Reports, 12, 11286. doi: 10.1038/s41598-022-15134-5

Decourtye, L., McCallum-Loudeac, J. A., Zellhuber-McMillan, S., Young, E., Sircombe, K. J., & Wilson, M. J. (2022). Characterization of a novel Lbx1 mouse loss of function strain. Differentiation, 123, 30-41. doi: 10.1016/j.diff.2021.12.001

Douglas, J., Winter, D., McNeill, A., Carr, S., Bunce, M., French, N., … de Ligt, J., Welch, D., & Geoghegan, J. L. (2022). Tracing the international arrivals of SARS-CoV-2 Omicron variants after Aotearoa New Zealand reopened its border. Nature Communications, 13, 6484. doi: 10.1038/s41467-022-34186-9

Forde, T. L., Dennis, T. P. W., Aminu, O. R., Harvey, W. T., Hassim, A., Kiwelu, I., … Biek, R. (2022). Population genomics of Bacillus anthracis from an anthrax hyperendemic area reveals transmission processes across spatial scales and unexpected within-host diversity. Microbial Genomics, 8, 000759. doi: 10.1099/mgen.0.000759

Gao, Q., Cheng, X., Merriman, T. R., Wang, C., Cui, L., Zhang, H., … Lu, J. (2022). Manifestations de la goutte chez 9754 patients d’un centre clinique chinois: étude observationnelle sur 10 ans. Revue du Rhumatisme, 89, 65-71. doi: 10.1016/j.rhum.2021.07.002

Gardner, P. P., Paterson, J. M., McGimpsey, S., Ashari-Ghomi, F., Umu, S. U., Pawlik, A., Gavryushkin, A., & Black, M. A. (2022). Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software. Genome Biology, 23, 56. doi: 10.1186/s13059-022-02625-x

Guévremont, D., Tsui, H., Knight, R. G., Fowler, C. J., Masters, C. L., Martins, R. N., Abraham, W. C., Tate, W. P., Cutfield, N. J., & Williams, J. M. (2022). Plasma microRNA vary in association with the progression of Alzheimer's disease. Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring, 14, e12251. doi: 10.1002/dad2.12251

Ha, M., Bekhit, A. E.-D., McConnell, M., & Carne, A. (2022). A simple method for enrichment of β-lactoglobulin from bovine milk whey involving selective hydrolysis by two fungal protease preparations. Food Chemistry, 368, 130820. doi: 10.1016/j.foodchem.2021.130820

Hakkaart, C., Pearson, J. F., Marquart, L., Dennis, J., Wiggins, G. A. R., Barnes, D. R., Robinson, B. A., Mace, P. D., … Walker, L. C. (2022). Copy number variants as modifiers of breast cancer risk for BRCA1/BRCA2 pathogenic variant carriers. Communications Biology, 5, 1061. doi: 10.1038/s42003-022-03978-6

Handley, T. N. G., Kleffmann, T., & Butler, M. I. (2022). Development of ULYSSIS, a tool for the biosynthesis of cyclotides and cyclic knottins. International Journal of Peptide Research & Therapeutics, 28, 21. doi: 10.1007/s10989-021-10336-3

Hards, K., Cheung, C.-Y., Waller, N., Adolph, C., Keighley, L., Tee, Z. S., Harold, L. K., Menorca, A., … Tyndall, J. D. A., McNeil, M. B., … Opel-Reading, H. K., Krause, K. L., … Berney, M., … Cook, G. M. (2022). An amiloride derivative is active against the F₁F_o-ATP synthase and cytochrome bd oxidase of Mycobacterium tuberculosis. Communications Biology, 5, 166. doi: 10.1038/s42003-022-03110-8

Harfoot, R., Lawley, B., Hernández, L. C., Kuang, J., Grant, J., Treece, J. M., LeQueux, S., Day, R., Jack, S., Stanton, J.-A. L., Bostina, M., Ussher, J. E., & Quiñones‑Mateu, M. E. (2022). Characterization of the first SARS-CoV-2 isolates from Aotearoa New Zealand as part of a rapid response to the COVID-19 pandemic. Viruses, 14, 366. doi: 10.3390/v14020366

He, Y., Xue, X., Terkeltaub, R., Dalbeth, N., Merriman, T. R., Mount, D. B., … Li, C. (2022). Association of acidic urine pH with impaired renal function in primary gout patients: A Chinese population-based cross-sectional study. Arthritis Research & Therapy, 24(1), 32. doi: 10.1186/s13075-022-02725-w

Helliwell, A. M., Stockwell, P. A., Edgar, C. D., Chatterjee, A., & Tate, W. P. (2022). Dynamic epigenetic changes during a relapse and recovery cycle in myalgic encephalomyelitis/chronic fatigue ayndrome. International Journal of Molecular Sciences, 23(19), 11852. doi: 10.3390/ijms231911852

Herridge, R., McCourt, T., Jacobs, J. M. E., Mace, P., Brownfield, L., & Macknight, R. (2022). Identification of the genes at S and Z reveals the molecular basis and evolution of grass self-incompatibility. Frontiers in Plant Science, 13, 1011299. doi: 10.3389/fpls.2022.1011299

Hitchman, L. M., Faatoese, A., Merriman, T. R., Miller, A. L., Liau, Y., Graham, O. E. E., Kee, P. S., Pearson, J. F., … Cameron, V. A., Kennedy, M. A., & Maggo, S. D. S. (2022). Allelic diversity of the pharmacogene CYP2D6 in New Zealand Māori and Pacific peoples. Frontiers in Genetics, 13, 1016416. doi: 10.3389/fgene.2022.1016416

Hudson, D. T., Bromell, J. S., Day, R. C., McInnes, T., Ward, J. M., & Beck, C. W. (2022). Gene expression analysis of the Xenopus laevis early limb bud proximodistal axis. Developmental Dynamics, 251, 1880-1896. doi: 10.1002/dvdy.517

Jamieson, S. A., Pudjihartono, M., Horne, C. R., Salamanca Viloria, J., Dunlop, J. L., McMillan, H. D., Day, R. C., … Mace, P. D. (2022). Nanobodies identify an activated state of the TRIB2 pseudokinase. Structure, 30, 1518-1529. doi: 10.1016/j.str.2022.08.006

Jelley, L., Douglas, J., Ren, X., Winter, D., McNeill, A., Huang, S., French, N., Welch, D., … de Ligt, J., & Geoghegan, J. L. (2022). Genomic epidemiology of Delta SARS-CoV-2 during transition from elimination to suppression in Aotearoa New Zealand. Nature Communications, 13, 4035. doi: 10.1038/s41467-022-31784-5

Jeunen, G.-J., von Ammon, U., Cross, H., Ferreira, S., Lamare, M., Day, R., Treece, J., … Gemmell, N. J., & Stanton, J.-A. L. (2022). Moving environmental DNA (eDNA) technologies from benchtop to the field using passive sampling and PDQeX extraction. Environmental DNA, 4, 1420-1433. doi: 10.1002/edn3.356

Karunaraj, P., Tidswell, O., Duncan, E. J., Lovegrove, M. R., Jefferies, G., Johnson, T. K., Beck, C. W., & Dearden, P. K. (2022). Noggin proteins are multifunctional extracellular regulators of cell signaling. Genetics, 221(1), iyac049. doi: 10.1093/genetics/iyac049

Kavle, R. R., Carne, A., Bekhit, A. E.-D. A., Kebede, B., & Agyei, D. (2022). Macronutrients and mineral composition of wild harvested Prionoplus reticularis edible insect at various development stages: Nutritional and mineral safety implications. International Journal of Food Science & Technology, 57, 6270-6278. doi: 10.1111/ijfs.15545

Kavle, R. R., Carne, A., Bekhit, A. E.-D. A., Kebede, B., & Agyei, D. (2022). Proximate composition and lipid nutritional indices of larvae and pupae of the edible Huhu beetle (Prionoplus reticularis) endemic to New Zealand. Journal of Food Composition & Analysis, 110, 104578. doi: 10.1016/j.jfca.2022.104578

Kavle, R. R., Pritchard, E. T. M., Bekhit, A. E.-D. A., Carne, A., & Agyei, D. (2022). Edible insects: A bibliometric analysis and current trends of published studies (1953-2021). International Journal of Tropical Insect Science, 42, 3335-3355. doi: 10.1007/s42690-022-00814-6

Khaing, E. P., Zhong, V., Kodru, S., Vass, I., & Eaton-Rye, J. J. (2022). Tyr244 of the D2 protein is required for correct assembly and operation of the quinone-iron-bicarbonate acceptor complex of Photosystem II. Biochemistry, 61, 1298-1312. doi: 10.1021/acs.biochem.2c00164

Kip, E., Bentall, L., Underwood, C. F., Hughes, S. M., & Parr-Brownlie, L. C. (2022). Patterned stimulation of the Chrimson opsin in glutamatergic motor thalamus neurons improves forelimb akinesia in parkinsonian rats. Neuroscience, 507, 64-78. doi: 10.1016/j.neuroscience.2022.10.026

Lam, P., Vinnakota, C., Calvo-Flores Guzmán, B., Newland, J., Peppercorn, K., Tate, W. P., … Kwakowsky, A. (2022). Beta-amyloid (Aβ_1-42) increases the expression of NKCC1 in the mouse hippocampus. Molecules, 27, 2440. doi: 10.3390/molecules27082440

Lawer, A., Tyler, C., Hards, K., Keighley, L. M., Cheung, C.-Y., Kierek, F., Su, S., … McInnes, T., Tyndall, J. D. A., Krause, K. L., Cook, G. M., & Gamble, A. B. (2022). Synthesis and biological evaluation of aurachin D analogues as inhibitors of Mycobacterium tuberculosis cytochrome bd oxidase. ACS Medicinal Chemistry Letters, 13, 1663-1669. doi: 10.1021/acsmedchemlett.2c00401

Lee, K., Vakili, S., Burden, H. J., Adams, S., Smith, G. C., Kulatea, B., Wright-McNaughton, M., Sword, D., … King, F., Wilcox, P., Merriman, T. R., Krebs, J. D., Hall, R. M., Murphy, R., Merry, T. L., & Shepherd, P. R. (2022). The minor allele of the CREBRF rs373863828 p.R457Q coding variant is associated with reduced levels of myostatin in males: Implications for body composition. Molecular Metabolism, 59, 101464. doi: 10.1016/j.molmet.2022.101464

Leiva, C., Riesgo, A., Combosch, D., Arias, M. B., Giribet, G., Downey, R., Kenny, N. J., & Taboada, S. (2022). Guiding marine protected area network design with comparative phylogeography and population genomics: An exemplary case from the Southern Ocean. Diversity & Distributions, 28, 1891-1907. doi: 10.1111/ddi.13590

Lubbe, P., Rawlence, N. J., Kardailsky, O., Robertson, B. C., Day, R., Knapp, M., & Dussex, N. (2022). Mitogenomes resolve the phylogeography and divergence times within the endemic New Zealand Callaeidae (Aves: Passerida). Zoological Journal of the Linnean Society, 196, 1451-1463. doi: 10.1093/zoolinnean/zlac060

Lupi, A. S., Sumpter, N. A., Leask, M. P., O'Sullivan, J., Fadason, T., de los Campos, G., Merriman, T. R., … Vazquez, A. I. (2022). Local genetic covariance between serum urate and kidney function estimated with Bayesian multitrait models. Genes Genomes Genetics, 12(9), jkac158. doi: 10.1093/g3journal/jkac158

Martín-de-Saavedra, M. D., Dos Santos, M., Culotta, L., Varea, O., Spielman, B. P., Parnell, E., … Turk, L. S., … Penzes, P. (2022). Shed CNTNAP2 ectodomain is detectable in CSF and regulates Ca²⁺ homeostasis and network synchrony via PMCA2/ATP2B2. Neuron, 110, 627-643. doi: 10.1016/j.neuron.2021.11.025

McCormick, N., Yokose, C., Joshi, A. D., Sheehy, S., Rosenberg, L., Warner, E. T., … Merriman, T. R., … Choi, H. K. (2022). Racial and sex disparities in gout prevalence among US adults. JAMA Network Open, 5(8), e2226804. doi: 10.1001/jamanetworkopen.2022.26804

Mehta, S., Wright, D., Black, M. A., Merrie, A., Anjomshoaa, A., Munro, F., Reeve, A., McCall, J., & Print, C. (2022). Impact of clinical data veracity on cancer genomic research. JNCI Cancer Spectrum. doi: 10.1093/jncics/pkac070

Nishtala, P. S., & Chyou, T.-y. (2022). An updated analysis of psychotropic medicine utilisation in older people in New Zealand from 2005 to 2019. Drugs & Aging, 39, 657-669. doi: 10.1007/s40266-022-00965-8

Ohline, S. M., Chan, C., Schoderboeck, L., Wicky, H. E., Tate, W. P., Hughes, S. M., & Abraham, W. C. (2022). Effect of soluble amyloid precursor protein-alpha on adult hippocampal neurogenesis in a mouse model of Alzheimer's disease. Molecular Brain, 15, 5. doi: 10.1186/s13041-021-00889-1

Palmer, H., Nimick, M., Mazumder, A., Taurin, S., Rana, Z., & Rosengren, R. J. (2022). Raloxifene suppresses tumor growth and metastasis in an orthotopic model of castration-resistant prostate cancer. Biomedicines, 10, 853. doi: 10.3390/biomedicines10040853

Palmer, S., Dearden, P. K., Mercier, O. R., King-Hunt, A., & Lester, P. J. (2022). Gene drive and RNAi technologies: A bio-cultural review of next-generation tools for pest wasp management in New Zealand. Journal of the Royal Society of New Zealand, 52(5), 508-525. doi: 10.1080/03036758.2021.1985531

Paluda, A., Middleton, A. J., Rossig, C., Mace, P. D., & Day, C. L. (2022). Ubiquitin and a charged loop regulate the ubiquitin E3 ligase activity of Ark2C. Nature Communications, 13, 1181. doi: 10.1038/s41467-022-28782-y

Peppercorn, K., Kleffmann, T., Jones, O., Hughes, S., & Tate, W. (2022). Secreted amyloid precursor protein alpha, a neuroprotective protein in the brain has widespread effects on the transcriptome and proteome of human inducible pluripotent stem cell-derived glutamatergic neurons related to memory mechanisms. Frontiers in Neuroscience, 16, 858524. doi: 10.3389/fnins.2022.858524

Perez-Santangelo, S., Napier, N., Robson, F., Weller, J. L., Bond, D. M., & Macknight, R. C. (2022). A point mutation in Phytochromobilin synthase alters the circadian clock and photoperiodic flowering of Medicago truncatula. Plants, 11(3), 239. doi: 10.3390/plants11030239

Phiri, B. J., Fèvre, D., & Hidano, A. (2022). Uptrend in global managed honey bee colonies and production based on a six-decade viewpoint, 1961-2017. Scientific Reports, 12(1), 21298. doi: 10.1038/s41598-022-25290-3

Rana, Z., Rosengren, R., & Smith, P. (2022). Exploring the mechanism and suggesting combination therapies for HDAC inhibitors in androgen receptor-null prostate cancer using multivariate statistical analysis and data mining techniques. Bioinformatics & Biology Insights, 11, 1-11. doi: 10.1177/11779322221145428

Russell, E. M., Carlson, J. C., Krishnan, M., Hawley, N. L., Sun, G., Cheng, H., … Major, T. J., … Merriman, T. R., … Minster, R. L. (2022). CREBRF missense variant rs373863828 has both direct and indirect effects on type 2 diabetes and fasting glucose in Polynesian peoples living in Samoa and Aotearoa New Zealand. BMJ Open Diabetes Research & Care, 10, e002275. doi: 10.1136/bmjdrc-2021-002275

Samarth, Lee, R., Kelly, D., Turnbull, M. H., Macknight, R., Poole, A. M., & Jameson, P. E. (2022). A novel TFL1 gene induces flowering in the mast seeding alpine snow tussock, Chionochloa pallens (Poaceae). Molecular Ecology, 31, 822-838. doi: 10.1111/mec.16273

Sattar, S., Ullah, I., Khanum, S., Bailie, M., Shamsi, B., Ahmed, I., … Altermann, E. (2022). Genome analysis and therapeutic evaluation of a novel lytic bacteriophage of Salmonella Typhimurium: Suggestive of a new genus in the subfamily Vequintavirinae. Viruses, 14, 241. doi: 10.3390/v14020241

Sattar, S., Ullah, I., Khanum, S., Bailie, M., Shamsi, B., Ahmed, I., … Altermann, E. (2022). Phenotypic characterization and genome analysis of a novel Salmonella Typhimurium phage having unique tail fiber genes. Scientific Reports, 12, 5732. doi: 10.1038/s41598-022-09733-5

Shain, D. H., Iakovenko, N. S., Cridge, A. G., Novis, P. M., Plášek, V., & Dearden, P. K. (2022). Microinvertebrate colonization of New Zealand’s thermally extreme environments. Evolutionary Biology, 49, 414-423. doi: 10.1007/s11692-022-09578-w

Shakil, M. S., Rana, Z., Hanif, M., & Rosengren, R. J. (2022). Key considerations when using the sulforhodamine B assay for screening novel anticancer agents. Anti-Cancer Drugs, 33(1), 6-10. doi: 10.1097/CAD.0000000000001131

Shehreen, S., Birkholz, N., Fineran, P. C., & Brown, C. M. (2022). Widespread repression of anti-CRISPR production by anti-CRISPR-associated proteins. Nucleic Acids Research, 50(15), 8615-8625. doi: 10.1093/nar/gkac674

Smyth, L. C. D., Murray, H. C., Hill, M., van Leeuwen, E., Highet, B., Magon, N. J., … Mathiesen, S. N., Mockett, B., … Clarkson, A. N., … Abraham, W. C., Hughes, S. M., … Kettle, A. J., … Hampton, M. B. (2022). Neutrophil-vascular interactions drive myeloperoxidase accumulation in the brain in Alzheimer's disease. Acta Neuropathologicca Communications, 10, 38. doi: 10.1186/s40478-022-01347-2

Stewart, S., Phipps-Green, A., Gamble, G. D., Stamp, L. K., Taylor, W. J., Neogi, T., Merriman, T. R., & Dalbeth, N. (2022). Is repeat serum urate testing superior to a single test to predict incident gout over time? PLoS ONE, 17(2), e0263175. doi: 10.1371/journal.pone.0263175

Stoller, M. L., Basak, I., Denorme, F., Rowley, J. W., Alsobrooks, J., Parsawar, K., … Campbell, R. A. (2022). Neutrophil cathepsin G proteolysis of protease activated receptor 4 generates a novel, functional tethered ligand. Blood Advances, 6(7), 2303-2308. doi: 10.1182/bloodadvances.2021006133

Sun, M., Sun, W., Zhao, X., Li, Z., Dalbeth, N., Ji, A., … Merriman, T. R., & Li, C. (2022). A machine learning-assisted model for renal urate underexcretion with genetic and clinical variables among Chinese men with gout. Arthritis Research & Therapy, 24, 67. doi: 10.1186/s13075-022-02755-4

Tate, W., Walker, M., Sweetman, E., Helliwell, A., Peppercorn, K., Edgar, C., Blair, A., & Chatterjee, A. (2022). Molecular mechanisms of neuroinflammation in ME/CFS and long COVID to sustain disease and promote relapses. Frontiers in Neurology, 13, 877772. doi: 10.3389/fneur.2022.877772

Taylor, M. F., Black, M. A., Hampton, M. B., & Ledgerwood, E. C. (2022). Insights into H₂O₂-induced signaling in Jurkat cells from analysis of gene expression. Free Radical Research, 56(9-10), 666-676. doi: 10.1080/10715762.2023.2165073

Taylor, S. E., & Dearden, P. K. (2022). The Nasonia pair-rule gene regulatory network retains its function over 300 million years of evolution. Development, 149, dev199632. doi: 10.1242/dev.199632

Tessadori, F., Duran, K., Knapp, K., Fellner, M., Deciphering Developmental Disorders Study, Smithson, S., … Robertson, S. P., … Mace, P. D., Bicknell, L. S., & van Haaften, G. (2022). Recurrent de novo missense variants across multiple histone H4 genes underlie a neurodevelopmental syndrome. American Journal of Human Genetics, 109, 750-758. doi: 10.1016/j.ajhg.2022.02.003

Thacharodi, A., & Lamont, I. L. (2022). Aminoglycoside resistance in Pseudomonas aeruginosa: The contribution of the MexXY-OprM efflux pump varies between isolates. Journal of Medical Microbiology, 71(6), 001551. doi: 10.1099/jmm.0.001551

Thacharodi, A., & Lamont, I. L. (2022). Aminoglycoside-modifying enzymes are sufficient to make Pseudomonas aeruginosa clinically resistant to key antibiotics. Antibiotics, 11(7), 884. doi: 10.3390/antibiotics11070884

Topless, R. K., Gaffo, A., Stamp, L. K., Robinson, P. C., Dalbeth, N., & Merriman, T. R. (2022). Gout and the risk of COVID-19 diagnosis and death in the UK Biobank: A population-based study. Lancet Rheumatology, 4, e274-e281. doi: 10.1016/S2665-9913(21)00401-X

Topless, R., Green, R., Morgan, S. L., Robinson, P., Merriman, T., & Gaffo, A. L. (2022). Folic acid and methotrexate use and their association with COVID-19 diagnosis and mortality: A case-control analysis from the UK Biobank. BMJ Open, 12, e062945. doi: 10.1136/bmjopen-2022-062945

Topless, R., Noorbaloochi, S., Merriman, T. R., & Singh, J. A. (2022). Change in serum urate level with urate-lowering therapy initiation associates in the immediate term with patient-reported outcomes in people with gout. Seminars in Arthritis & Rheumatism, 56, 152057. doi: 10.1016/j.semarthrit.2022.152057

Walker, M. O. M., Hall, K. H., Peppercorn, K., & Tate, W. P. (2022). The significance of oxidative stress in the pathophysiology of Long COVID and Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS). Medical Research Archives, 10(9), 3050. doi: 10.18103/mra.v10i9.3050

Wang, K., Cadzow, M., Bixley, M., Leask, M. P., Merriman, M. E., Yang, Q., … Takei, R., Phipps-Green, A., Major, T. J., Topless, R., … Stamp, L. K., … Merriman, T. R. (2022). A Polynesian-specific copy number variant encompassing the MICA gene associates with gout. Human Molecular Genetics, 31(21), 3757-3768. doi: 10.1093/hmg/ddac094

Winichayakul, S., Macknight, R., Le Lievre, L., Beechey-Gradwell, Z., Lee, R., Cooney, L., … Roberts, N. (2022). Insight into the regulatory networks underlying the high lipid perennial ryegrass growth under different irradiances. PLoS ONE, 17(10), e0275503. doi: 10.1371/journal.pone.0275503

Winter, D. J., Weir, B. S., Glare, T., Rhodes, J., Perrott, J., Fisher, M. C., … Dearden, P. K., & Cox, M. P. (2022). A single fungal strain was the unexpected cause of a mass aspergillosis outbreak in the world’s largest and only flightless parrot. iScience, 25, 105470. doi: 10.1016/j.isci.2022.105470

Xue, X., Yuan, X., Han, L., Li, X., Merriman, T. R., Cui, L., … Li, C. (2022). Effect of clinical typing on serum urate targets of benzbromarone in Chinese gout patients: A prospective cohort study. Frontiers in Medicine, 8, 806710. doi: 10.3389/fmed.2021.806710

Ahmmed, M. K., Ahmmed, F., Stewart, I., Carne, A., Tian, H. S., & Bekhit, A. E.-D. A. (2021). Omega-3 phospholipids in Pacific blue mackerel (Scomber australasicus) processing by-products. Food Chemistry, 353, 129451. doi: 10.1016/j.foodchem.2021.129451

Ahmmed, M. K., Carne, A., Ahmmed, F., Stewart, I., Tian, H., & Bekhit, A. E.-D. A. (2021). Positional distribution of fatty acids and phospholipid composition in King salmon (Oncorhynchus tshawytscha) head, roe and skin using nuclear magnetic resonance spectroscopy. Food Chemistry, 363, 130302. doi: 10.1016/j.foodchem.2021.130302

Ahmmed, M. K., Carne, A., Bunga, S., Tian, H. S., & Bekhit, A. E.-D. A. (2021). Lipidomic signature of Pacific lean fish species head and skin using gas chromatography and nuclear magnetic resonance spectroscopy. Food Chemistry, 365, 130637. doi: 10.1016/j.foodchem.2021.130637

Ahmmed, M. K., Carne, A., Stewart, I., Tian, H., & Bekhit, A. E.-D. A. (2021). Phosphorus-31 nuclear magnetic resonance (³¹P NMR) for quantitative measurements of phospholipids derived from natural products: Effect of analysis conditions. LWT, 142, 110991. doi: 10.1016/j.lwt.2021.110991

Aiderus, A., Newberg, J. Y., Guzman-Rojas, L., Contreras-Sandoval, A. M., Meshey, A. L., Jones, D. J., … Black, M. A., … Mann, M. B. (2021). Transposon mutagenesis identifies cooperating genetic drivers during keratinocyte transformation and cutaneous squamous cell carcinoma progression. PLoS Genetics, 17(8), e1009094. doi: 10.1371/journal.pgen.1009094

Al-Ani, A. H., Antoun, J. S., Thomson, W. M., Topless, R., Merriman, T. R., & Farella, M. (2021). Common variants of EDA are associated with non-syndromic hypodontia. Orthodontics & Craniofacial Research, 24, 155-163. doi: 10.1111/ocr.12419

Almomani, S. N., Alsaleh, A. A., Weeks, R. J., Chatterjee, A., Day, R. C., Honda, I., … Fukuzawa, R., Slatter, T. L., Hung, N. A., Devenish, C., Morison, I. M., & Macaulay, E. C. (2021). Identification and validation of DNA methylation changes in pre-eclampsia. Placenta, 110, 16-23. doi: 10.1016/j.placenta.2021.05.005

Badart, M. P., Barnes, E. M., Cording, A. P., Gilmer, S. C. L., Billinghurst, I. D., Edupuganti, V. V. S. R., … Bland, A. R., Bower, R. L., Rana, Z., Ferguson, S. A., Opel Reading, H. K., Cook, G. M., Rosengren, R. J., Krause, K. L., Gamble, A. B., Ashton, J. C., & Hawkins, B. C. (2021). Synthesis and biological evaluation of (-) and (+)-spiroleucettadine and analogues. ChemMedChem, 16, 1308-1315. doi: 10.1002/cmdc.202000954

Badii, M., Gaal, O. I., Cleophas, M. C., Klück, V., Davar, R., Habibi, E., … Stamp, L. K., … Phipps-Green, A. J., … Merriman, T. R., … Joosten, L. A. B. (2021). Urate-induced epigenetic modifications in myeloid cells. Arthritis Research & Therapy, 23, 202. doi: 10.1186/s13075-021-02580-1

Barnett, S. C., Parr-Brownlie, L. C., Perry, B. A. L., Young, C. K., Wicky, H. E., Hughes, S. M., McNaughton, N., & Dalrymple-Alford, J. C. (2021). Anterior thalamic nuclei neurons sustain memory. Current Research in Neurobiology, 2, 100022. doi: 10.1016/j.crneur.2021.100022

Barzak, F. M., Ryan, T. M., Kvach, M. V., Kurup, H. M., Aihara, H., Harris, R. S., … Jameson, G. B. (2021). Small-angle x-ray scattering models of APOBEC3B catalytic domain in a complex with a single-stranded DNA inhibitor. Viruses, 13(2), 290. doi: 10.3390/v13020290

Basak, I., Hansen, R. A., Ward, M. E., & Hughes, S. M. (2021). Deficiency of the lysosomal protein CLN5 alters lysosomal function and movement. Biomolecules, 11, 1412. doi: 10.3390/biom11101412

Begemann, A., Sticht, H., Begtrup, A., Vitobello, A., Faivre, L., Siddharth, B., … Day, R., … Sadleir, L. G., … Rauch, A. (2021). New insights into the clinical and molecular spectrum of the novel CYFIP2-related neurodevelopmental disorder and impairment of the WRC-mediated actin dynamics. Genetics in Medicine, 23(3), 543-554. doi: 10.1038/s41436-020-01011-x

Bhandari, B. K., Lim, C. S., & Gardner, P. P. (2021). TISIGNER.com: Web services for improving recombinant protein production. Nucleic Acids Research, 49, W654-W661. doi: 10.1093/nar/gkab175

Bhandari, B. K., Lim, C. S., Remus, D. M., Chen, A., van Dolleweerd, C., & Gardner, P. P. (2021). Analysis of 11,430 recombinant protein production experiments reveals that protein yield is tunable by synonymous codon changes of translation initiation sites. PLoS Computational Biology, 17(10), e1009461. doi: 10.1371/journal.pcbi.1009461

Blakes, A. J. M., Gaul, E., Lam, W., Shannon, N., Knapp, K. M., Bicknell, L. S., Jackson, M. R., Wade, E. M., Robertson, S., … Douglas, A. G. L. (2021). Pathogenic variants causing ABL1 malformation syndrome cluster in a myristoyl-binding pocket and increase tyrosine kinase activity. European Journal of Human Genetics, 29, 593-603. doi: 10.1038/s41431-020-00766-w

Brew, T., Bougen-Zhukov, N., Mitchell, W., Decourtye, L., Schulpen, E., Nouri, Y., Godwin, T., & Guilford, P. (2021). Loss of E-cadherin leads to druggable vulnerabilities in sphingolipid metabolism and vesicle trafficking. Cancers, 14(1), 102. doi: 10.3390/ cancers14010102

Bunga, S., Ahmmed, M. K., Carne, A., & Bekhit, A. E.-D. A. (2021). Effect of salted-drying on bioactive compounds and microbiological changes during the processing of karasumi-like Chinook salmon (Oncorhynchus tshawytscha) roe product. Food Chemistry, 357, 129780. doi: 10.1016/j.foodchem.2021.129780

Burden, H. J., Adams, S., Kulatea, B., Wright-McNaughton, M., Sword, D., Ormsbee, J. J., … Merriman, T. R., … Krebs, J. D., Hall, R. M., … Merry, T. L. (2021). The CREBRF diabetes-protective rs373863828-A allele is associated with enhanced early insulin release in men of Māori and Pacific ancestry. Diabetologia, 64, 2779-2789. doi: 10.1007/s00125-021-05552-x

Burgess, A. E., Kleffmann, T., & Mace, P. D. (2021). Oncogenic truncations of ASXL1 enhance a motif for BRD4 ET-domain binding. Journal of Molecular Biology, 433, 167242. doi: 10.1016/j.jmb.2021.167242

Calcino, A. D., Kenny, N. J., & Gerdol, M. (2021). Single individual structural variant detection uncovers widespread hemizygosity in molluscs. Philosophical Transactions of the Royal Society B, 376, 20200153. doi: 10.1098/rstb.2020.0153

Campbell, A. C., Tanner, J. J., & Krause, K. L. (2021). Optimisation of neuraminidase expression for use in drug discovery by using HEK293-6E cells. Viruses, 13, 1893. doi: 10.3390/v13101893

Chen, S., Lovell, S., Lee, S., Fellner, M., Mace, P. D., & Bogyo, M. (2021). Identification of highly selective covalent inhibitors by phage display. Nature Biotechnology, 39, 490-498. doi: 10.1038/s41587-020-0733-7

Chyou, T.-y., & Nishtala, P. S. (2021). Identifying frequent drug combinations associated with delirium in older adults: application of association rules method to a case-time-control design. Pharmacoepidemiology & Drug Safety, 30, 1402-1410. doi: 10.1002/pds.5292

Colantonio, L. D., Reynolds, R. J., Merriman, T. R., Gaffo, A., Singh, J. A., Plante, T. B., … Irvin, M. R. (2021). Higher serum urate levels are associated with an increased risk for sudden cardiac death. Journal of Rheumatology, 48, 1745-1753. doi: 10.3899/jrheum.210139

Dalbeth, N., Horne, A., Mihov, B., Stewart, A., Gamble, G. D., Merriman, T. R., Stamp, L. K., & Reid, I. R. (2021). Elevated urate does not alter bone turnover markers: Randomized controlled trial of inosine supplementation in post-menopausal women. Arthritis & Rheumatology, 73(9), 1758-1764. doi: 10.1002/art.41691

Daniloski, D., Petkoska, A. T., Lee, N. A., Bekhit, A. E.-D., Carne, A., & Vaskoska, R. (2021). Active edible packaging based on milk proteins: A route to carry and deliver nutraceuticals. Trends in Food Science & Technology, 111, 688-705. doi: 10.1016/j.tifs.2021.03.024

Das, A., Middleton, A. J., Padala, P., Ledgerwood, E. C., Mace, P. D., & Day, C. L. (2021). The structure and ubiquitin binding properties of TRAF RING heterodimers. Journal of Molecular Biology, 433, 166844. doi: 10.1016/j.jmb.2021.166844

Decourtye-Espiard, L., Bougen-Zhukov, N., Godwin, T., Brew, T., Schulpen, E., Black, M. A., & Guilford, P. (2021). E-cadherin-deficient epithelial cells are sensitive to HDAC inhibitors. Cancers, 14(1), 175. doi: 10.3390/ cancers14010102

Dixon, K., Brew, T., Farnell, D., Godwin, T. D., Cheung, S., Chow, C., … Guilford, P., & Huntsman, D. G. (2021). Modelling hereditary diffuse gastric cancer initiation using transgenic mouse-derived gastric organoids and single-cell sequencing. Journal of Pathology, 254, 254-264. doi: 10.1002/path.5675

Dussex, N., van der Valk, T., Morales, H. E., Wheat, C. W., Díez-del-Molino, D., von Seth, J., Foster, Y., … Le Lec, M. F., Dearden, P. K., … Knapp, M., Gemmell, N. J., Robertson, F., … Robertson, B. C., & Dalén, L. (2021). Population genomics of the critically endangered kākāpō. Cell Genomics, 1, 100002. doi: 10.1016/j.xgen.2021.100002

Emde, A.-K., Phipps-Green, A., Cadzow, M., Gallagher, C. S., Major, T. J., Merriman, M. E., Topless, R. K., Takei, R., Dalbeth, N., … Stamp, L. K., … Wilcox, P. L., … Merriman, T. R., & Castel, S. E. (2021). Mid-pass whole genome sequencing enables biomedical genetic studies of diverse populations. BMC Genomics, 22, 666. doi: 10.1186/s12864-021-07949-9

Fellner, M., Parakra, R., McDonald, K. O., Kass, I., Jameson, G. N. L., Willbanks, S. M., & Ledgerwood, E. C. (2021). Altered structure and dynamics of pathogenic cytochrome c variants correlate with increased apoptotic activity. Biochemical Journal, 478(3), 669-684. doi: 10.1042/bcj20200793

Forsman, J. A., & Eaton-Rye, J. J. (2021). The hydrophobicity of mutations targeting D1:Val219 modifies formate and diuron binding in the quinone-Fe-acceptor complex of Photosystem II. Physiologia Plantarum, 172, 2217-2225. doi: 10.1111/ppl.13469

Forsman, J. A., & Eaton-Rye, J. J. (2021). The interaction between PsbT and the DE loop of D1 in Photosystem II stabilizes the quinone-iron electron acceptor complex. Biochemistry, 60(1), 53-63. doi: 10.1021/acs.biochem.0c00668

Gao, Q., Cheng, X., Merriman, T. R., Wang, C., Cui, L., Zhang, H., … Lu, J. (2021). Trends in the manifestations of 9754 gout patients in a Chinese clinical center: A 10-year observational study. Joint Bone Spine, 88, 105078. doi: 10.1016/j.jbspin.2020.09.010

Glen, K. A., & Lamont, I. L. (2021). β-lactam resistance in Pseudomonas aeruginosa: Current status, future prospects. Pathogens, 10(12), 1638. doi: 10.3390/pathogens10121638

Hazlett, J., Niemi, V., Aiderus, A., Powell, K., Wise, L., Kemp, R., & Dunbier, A. K. (2021). Oestrogen deprivation induces chemokine production and immune cell recruitment in in vitro and in vivo models of oestrogen receptor-positive breast cancer. Breast Cancer Research, 23, 95. doi: 10.1186/s13058-021-01472-1

Herridge, R., Samarth, Brownfield, L., & Macknight, R. (2021). Identification and characterization of perennial ryegrass (Lolium perenne) vernalization genes. Frontiers in Plant Science, 12, 640324. doi: 10.3389/fpls.2021.640324

Hwang, J., Strange, N., Phillips, M. J. A., Krause, A. L., Heywood, A., Gamble, A. B., … Tyndall, J. D. A. (2021). Optimization of peptide-based inhibitors targeting the HtrA serine protease in Chlamydia: Design, synthesis and biological evaluation of pyridone-based and N-Capping group-modified analogues. European Journal of Medicinal Chemistry, 224(113692). doi: 10.1016/j.ejmech.2021.113692

Ji, A., Shaukat, A., Takei, R., Bixley, M., Cadzow, M., Topless, R. K., Major, T. J., Phipps-Green, A., Merriman, M. E., … Stamp, L. K., Dalbeth, N., … Merriman, T. R. (2021). Aotearoa New Zealand Māori and Pacific population-specific gout risk variants: CLNK is a separate risk gene at the SLC2A9 locus. Journal of Rheumatology, 48, 1736-1744. doi: 10.3899/jrheum.201684

Kenny, N. J., & Itskovich, V. B. (2021). Phylogenomic inference of the interrelationships of Lake Baikal sponges. Systematics & Biodiversity, 19(2), 209-217. doi: 10.1080/14772000.2020.1827077

Klionsky, D. J., Abdel-Aziz, A. K., Abdelfatah, S., Abdellatif, M., Abdoli, A., Abel, S., … Hughes, S. M., … Katare, R. G., … Tong, C.-K. (2021). Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy, 17(1), 1-382. doi: 10.1080/15548627.2020.1797280

Knapp, K. M., Jenkins, D. E., Sullivan, R., Harms, F. L., von Elsner, L., Ockeloen, C. W., … Bicknell, L. S. (2021). MCM complex members MCM3 and MCM7 are associated with a phenotypic spectrum from Meier-Gorlin syndrome to lipodystrophy and adrenal insufficiency. European Journal of Human Genetics, 29, 1110-1120. doi: 10.1038/s41431-021-00839-4

Kumar, M., Padala, P., Fahoum, J., Hassouna, F., Tsaban, T., Zoltsman, G., … Wiener, R. (2021). Structural basis for UFM1 transfer from UBA5 to UFC1. Nature Communications, 12, 5708. doi: 10.1038/s41467-021-25994-6

Lamichhane, R., Munro, F., Harrop, T. W. R., de la Harpe, S. M., Dearden, P. K., Vernall, A. J., McCall, J. L., & Ussher, J. E. (2021). Human liver-derived MAIT cells differ from blood MAIT cells in their metabolism and response to TCR-independent activation. European Journal of Immunology, 51, 879-892. doi: 10.1002/eji.202048830

Lawley, B., Grant, J., Harfoot, R., Treece, J. M., Day, R., Hernández, L. C., Stanton, J.-A. L., Ussher, J. E., & Quiñones‑Mateu, M. E. (2021). Rapid response to SARS-CoV-2 in Aotearoa New Zealand: Implementation of a diagnostic test and characterization of the first COVID-19 cases in the South Island. Viruses, 13(11), 2222. doi: 10.3390/v13112222

Leask, M. P., & Merriman, T. R. (2021). The genetic basis of urate control and gout: Insights into molecular pathogenesis from follow-up study of genome-wide association study loci. Best Practice & Research: Clinical Rheumatology, 35, 101721. doi: 10.1016/j.berh.2021.101721

Leask, M., Lovegrove, M., Romeril, A., Duncan, E., & Dearden, P. (2021). Evolution and genomic organization of the insect sHSP gene cluster and coordinate regulation in phenotypic plasticity. BMC Ecology & Evolution, 21, 154. doi: 10.1186/s12862-021-01885-8

Legge, M., & Fitzgerald, R. (2021). Does the Human Assisted Reproductive Technology Act 2004 need a review? Policy Quarterly, 17(1), 79-83.

Li, X., Sun, W., Lu, J., He, Y., Chen, Y., Ren, W., … Merriman, T. R., & Li, C. (2021). Effects of fenofibrate therapy on renal function in primary gout patients. Rheumatology, 60, 5020-5027. doi: 10.1093/rheumatology/keab231

Lim, C. S., Sozzi, V., Littlejohn, M., Yuen, L. K. W., Warner, N., Betz-Stablein, B., … Brown, C. M. (2021). Quantitative analysis of the splice variants expressed by the major hepatitis B virus genotypes. Microbial Genomics, 7, 000492. doi: 10.1099/mgen.0.000492

Lim, C. S., Weinstein, B. N., Roy, S. W., & Brown, C. M. (2021). Analysis of fungal genomes reveals commonalities of intron gain or loss and functions in intron-poor species. Molecular Biology & Evolution, 38(10), 4166-4186. doi: 10.1093/molbev/msab094

Lin, W., Farella, M., Antoun, J. S., Topless, R. K., Merriman, T. R., & Michelotti, A. (2021). Factors associated with orthodontic pain. Journal of Oral Rehabilitation, 48, 1135-1143. doi: 10.1111/joor.13227

Livingstone, R. W., Elder, M. K., Singh, A., Westlake, C. M., Tate, W. P., Abraham, W. C., & Williams, J. M. (2021). Secreted amyloid precursor protein-alpha enhances LTP through the synthesis and trafficking of Ca²⁺-permeable AMPA receptors. Frontiers in Molecular Neuroscience, 14, 660208. doi: 10.3389/fnmol.2021.660208

Luxenburger, A., Bougen-Zhukov, N., Fraser, M. G., Beetham, H., Harris, L. D., Schmidt, D., … Guilford, P. J., & Evans, G. B. (2021). Discovery of AL-GDa62 as a potential synthetic lethal lead for the treatment of gastric cancer. Journal of Medicinal Chemistry, 64, 18114-18142. doi: 10.1021/acs.jmedchem.1c01609

Madani, G., Lamping, E., & Cannon, R. D. (2021). Engineering a cysteine-deficient functional Candida albicans Cdr1 molecule reveals a conserved region at the cytosolic apex of ABCG transporters important for correct folding and trafficking of Cdr1. mSphere, 6(1), e01318-20. doi: 10.1128/mSphere.01318-20

Madani, G., Lamping, E., Lee, H. J., Niimi, M., Mitra, A. K., & Cannon, R. D. (2021). Small-scale plasma membrane preparation for the analysis of Candida albicans Cdr1-mGFPHis. Journal of Visualized Experiments, 172, e62592. doi: 10.3791/62592

Mandal, A. K., Leask, M. P., Estiverne, C., Choi, H. K., Merriman, T. R., & Mount, D. B. (2021). Genetic and physiological effects of insulin on human urate homeostasis. Frontiers in Physiology, 12, 713710. doi: 10.3389/fphys.2021.713710

Mayyas, I. M., Weeks, R. J., Day, R. C., Magrath, H. E., O’Connor, K. M., Kardailsky, O., Hore, T. A., Hampton, M. B., & Morison, I. M. (2021). Hairpin-bisulfite sequencing of cells exposed to decitabine documents the process of DNA demethylation. Epigenetics, 16(11), 1251-1259. doi: 10.1080/15592294.2020.1861169

McCartney, A. M., Hilario, E., Choi, S.-S., Guhlin, J., Prebble, J. M., Houliston, G., … Chagné, D. (2021). An exploration of assembly strategies and quality metrics on the accuracy of the rewarewa (Knightia excelsa) genome. Molecular Ecology Resources, 21, 2125-2144. doi: 10.1111/1755-0998.13406

McCormick, N., O'Connor, M. J., Yokose, C., Merriman, T. R., Mount, D. B., Leong, A., & Choi, H. K. (2021). Assessing the causal relationships between insulin resistance and hyperuricemia and gout using bidirectional Mendelian randomization. Arthritis & Rheumatology, 73(11), 2096-2104. doi: 10.1002/art.41779

McCulloch, G. A., Foster, B. J., Dutoit, L., Harrop, T. W. R., Guhlin, J., Dearden, P. K., & Waters, J. M. (2021). Genomics reveals widespread ecological speciation in flightless insects. Systematic Biology, 70(5), 863-876. doi: 10.1093/sysbio/syaa094

McCulloch, G. A., Guhlin, J., Dutoit, L., Harrop, T. W. R., Dearden, P. K., & Waters, J. M. (2021). Genomic signatures of parallel alpine adaptation in recently-evolved flightless insects. Molecular Ecology, 30, 6677-6686. doi: 10.1111/mec.16204

Middleton, A. J., Teyra, J., Zhu, J., Sidhu, S. S., & Day, C. L. (2021). Identification of ubiquitin variants that inhibit the E2 ubiquitin conjugating enzyme, Ube2k. ACS Chemical Biology, 16, 1745-1756. doi: 10.1021/acschembio.1c00445

Moore, M. P., Lamont, I. L., Williams, D., Paterson, S., Kukavica-Ibrulj, I., Tucker, N. P., … Winstanley, C. (2021). Transmission, adaptation and geographical spread of the Pseudomonas aeruginosa Liverpool epidemic strain. Microbial Genomics, 7, 000511. doi: 10.1099/mgen.0.000511

Muradova, E., Patel, N., Sell, B., Bittencourt, B. B., Ojeda, S. S., Adelmann, C. H., … Black, M. A., … Tsai, K. Y. (2021). Non-invasive assessment of epidermal genomic markers of UV exposure in skin. Journal of Investigative Dermatology, 141(1), 124-131.e2. doi: 10.1016/j.jid.2020.05.093

Murugayah, S. A., Evans, G. B., Tyndall, J. D. A., & Gerth, M. L. (2021). A single point mutation converts a glutaryl-7-aminocephalosporanic acid acylase into an N-acyl-homoserine lactone acylase. Biotechnology Letters, 43, 1467-1473. doi: 10.1007/s10529-021-03135-9

Nair, B. B., Khant Aung, Z., Porteous, R., Prescott, M., Glendining, K. A., Jenkins, D. E., Augustine, R. A., Silva, M. S. B., Yip, S. H., Bouwer, G. T., Brown, C. H., Jasoni, C. L., Campbell, R. E., Bunn, S. J., Anderson, G. M., Grattan, D. R., Herbison, A. E., & Iremonger, K. J. (2021). Impact of chronic variable stress on neuroendocrine hypothalamus and pituitary in male and female C57BL/6J mice. Journal of Neuroendocrinology, 33, e12972. doi: 10.1111/jne.12972

Narang, R. K., Gamble, G. G., Topless, R., Cadzow, M., Stamp, L. K., Merriman, T. R., & Dalbeth, N. (2021). Assessing the relationship between serum urate and urolithiasis using Mendelian randomization: An analysis of the UK Biobank. American Journal of Kidney Diseases, 78(2), 210-218. doi: 10.1053/j.ajkd.2020.11.018

Nilsen, A. R., Macrae, O. C., Andrew, K., Wang, X. Y., Te Tana, M. C., Soop, K., Brown, C. M., Summerfield, T. C., & Orlovich, D. A. (2021). Studies of New Zealand Cortinarius: Resolution of taxonomic conflicts in section Subcastanelli (Agaricales), new species and key to rozitoid species. New Zealand Journal of Botany, 59(4), 457-475. doi: 10.1080/0028825X.2021.1879877

Noble, A. J., Pearson, J. F., Boden, J. M., Horwood, L. J., Gemmell, N. J., Kennedy, M. A., & Osborne, A. J. (2021). A validation of Illumina EPIC array system with bisulfite-based amplicon sequencing. PeerJ, 9, e10762. doi: 10.7717/peerj.10762

Oliphant, A., & Thatje, S. (2021). Variable shrimp in variable environments: Reproductive investment within Palaemon varians. Hydrobiologia, 848, 469-484. doi: 10.1007/s10750-020-04455-z

Pandey, K., Yu, X.-W., Steinmetz, A., & Alberini, C. M. (2021). Autophagy coupled to translation is required for long-term memory. Autophagy, 17(7), 1614-1635. doi: 10.1080/15548627.2020.1775393

Panthi, S., Lyons, N. M. A., & Leitch, B. (2021). Impact of dysfunctional feed-forward inhibition on glutamate decarboxylase isoforms and γ-aminobutyric acid transporters. International Journal of Molecular Sciences, 22(14), 7740. doi: 10.3390/ijms22147740

Pechmann, M., Kenny, N. J., Pott, L., Heger, P., Chen, Y.-T., Buchta, T., … Roth, S. (2021). Striking parallels between dorsoventral patterning in Drosophila and Gryllus reveal a complex evolutionary history behind a model gene regulatory network. eLIFE, 10, e68287. doi: 10.7554/eLife.68287

Petersen, G. E. L., Fennessy, P. F., & Dearden, P. K. (2021). Management tools for genetic diversity in an isolated population of the honeybee (Apis mellifera) in New Zealand. Animal Production Science, 61, 1856-1862. doi: 10.1071/An21102

Philem, P., Kleffmann, T., Gai, S., Hawkins, B. C., Wilbanks, S. M., & Lamont, I. L. (2021). Identification of active site residues of the siderophore synthesis enzyme PvdF and evidence for interaction of PvdF with a substrate-providing enzyme. International Journal of Molecular Sciences, 22(4), 2211. doi: 10.3390/ijms22042211

Pinkney, H. R., Black, M. A., & Diermeier, S. D. (2021). Single-cell RNA-seq reveals heterogeneous lncRNA expression in xenografted triple-negative breast cancer cells. Biology, 10(10), 987. doi: 10.3390/biology10100987

Plese, B., Kenny, N. J., Rossi, M. E., Cárdenas, P., Schuster, A., Taboada, S., … Riesgo, A. (2021). Mitochondrial evolution in the Demospongiae (Porifera): Phylogeny, divergence time, and genome biology. Molecular Phylogenetics & Evolution, 155, 107011. doi: 10.1016/j.ympev.2020.107011

Pullikuth, A. K., Routh, E. D., Zimmermann, K. D., Chifman, J., Chou, J. W., Soike, M. H., … Black, M. A., … Miller, L. D. (2021). Bulk and single-cell profiling of breast tumors identifies TREM-1 as a dominant immune suppressive marker associated with poor outcomes. Frontiers in Oncology, 11, 734959. doi: 10.3389/fonc.2021.734959

Ramsay, K. A., McTavish, S. M., Wardell, S. J. T., & Lamont, I. L. (2021). The effects of sub-inhibitory antibiotic concentrations on Pseudomonas aeruginosa: Reduced susceptibility due to mutations. Frontiers in Microbiology, 12, 789550. doi: 10.3389/fmicb.2021.789550

Ran, Z., Xue, X., Han, L., Terkeltaub, R., Merriman, T. R., Zhao, T., … Li, C. (2021). Decrease in serum urate level is associated with loss of visceral fat in male gout patients. Frontiers in Endocrinology, 12, 724822. doi: 10.3389/fendo.2021.724822

Rana, Z., Diermeier, S., Walsh, F. P., Hanif, M., Hartinger, C. G., & Rosengren, R. J. (2021). Anti-proliferative, anti-angiogenic and safety profiles of novel HDAC inhibitors for the treatment of metastatic castration-resistant prostate cancer. Pharmaceuticals, 14, 1020. doi: 10.3390/ph14101020

Rehman, A., Jeukens, J., Levesque, R. C., & Lamont, I. L. (2021). Gene-gene interactions dictate ciprofloxacin resistance in Pseudomonas aeruginosa and facilitate prediction of resistance phenotype from genome sequence data. Antimicrobial Agents & Chemotherapy, 65(7), e02696. doi: 10.1128/aac.02696-20

Reynolds, R. J., Irvin, M. R., Bridges, S. L., Kim, H., Merriman, T. R., Arnett, D. K., … Vazquez, A. I. (2021). Genetic correlations between traits associated with hyperuricemia, gout, and comorbidities. European Journal of Human Genetics, 29, 1438-1445. doi: 10.1038/s41431-021-00830-z

Riesgo, A., Taboada, S., Kenny, N. J., Santodomingo, N., Moles, J., Leiva, C., … Maldonado, M. (2021). Recycling resources: Silica of diatom frustules as a source for spicule building in Antarctic siliceous demosponges. Zoological Journal of the Linnean Society, 192(2), 259-276. doi: 10.1093/zoolinnean/zlaa058

Robinson, P. C., Frampton, C., Phipps-Green, A., Neogi, T., Stamp, L., Taylor, W., Merriman, T. R., & Dalbeth, N. (2021). Longitudinal development of incident gout from low-normal baseline serum urate concentrations: Individual participant data analysis. BMC Rheumatology, 5(1), 33. doi: 10.1186/s41927-021-00204-4

Rossig, C., Le Lievre, L., Pilkington, S. M., & Brownfield, L. (2021). A simple and rapid method for imaging male meiotic cells in anthers of model and non-model plant species [Method paper]. Plant Reproduction, 34, 37-46. doi: 10.1007/s00497-021-00404-5

Ruberto, F. P., Balzano, S., Namburi, P., Kimchi, A., Pescini-Gobert, R., Obolensky, A., … Rivolta, C. (2021). Heterozygous deletions of noncoding parts of the PRPF31 gene cause retinitis pigmentosa via reduced gene expression. Molecular Vision, 27, 107-116. Retrieved from molvis.org/molvis/v27/107

Ryan, M., Tan, V. T. Y., Thompson, N., Guévremont, D., Mockett, B. G., Tate, W. P., Abraham, W. C., Hughes, S. M., & Williams, J. (2021). Lentivirus-mediated expression of human secreted amyloid precursor protein-alpha promotes long-term induction of neuroprotective genes and pathways in a mouse model of Alzheimer’s disease. Journal of Alzheimer's Disease, 79, 1075-1090. doi: 10.3233/JAD-200757

Safarian, S., Opel-Reading, H. K., Wu, D., Mehdipour, A. R., Hards, K., Harold, L. K., … Stewart, I., … Cook, G. M., Krause, K. L., & Michel, H. (2021). The cryo-EM structure of the bd oxidase from M. tuberculosis reveals a unique structural framework and enables rational drug design to combat TB. Nature Communications, 12(1), 5236. doi: 10.1038/s41467-021-25537-z

Samarth, Lee, R., Kelly, D., Turnbull, M. H., Macknight, R. C., Poole, A. M., & Jameson, P. E. (2021). Molecular control of the floral transition in the mast seeding plant Celmisia lyallii (Asteraceae). Molecular Ecology, 30, 1846-1863. doi: 10.1111/mec.15859

Schweiger, R., Padilla-Arizmendi, F., Nogueira-Lopez, G., Rostás, M., Lawry, R., Brown, C., … Mendoza-Mendoza, A. (2021). Insights into metabolic changes caused by the Trichoderma virens-maize root interaction. Molecular Plant-Microbe Interactions, 34(5), 524-537. doi: 10.1094/mpmi-04-20-0081-r

Seo, S., Sizemore, R. J., Reader, K. L., Smither, R. A., Wicky, H. E., Hughes, S. M., Bilkey, D. K., Parr-Brownlie, L. C., & Oorschot, D. E. (2021). A schizophrenia risk factor induces marked anatomical deficits at GABAergic-dopaminergic synapses in the rat ventral tegmental area: Essential evidence for new targeted therapies. Journal of Comparative Neurology, 529, 3946-3973. doi: 10.1002/cne.25225

Shain, D., Novis, P. M., Cridge, A. G., Zawierucha, K., Geneva, A. J., & Dearden, P. K. (2021). Five animal phyla in glacier ice reveal unprecedented biodiversity in New Zealand's Southern Alps. Scientific Reports, 11(1), 3898. doi: 10.1038/s41598-021-83256-3

Shen, X., Wang, C., Liang, N., Liu, Z., Li, X., Zhu, Z.-J., Merriman, T. R., Dalbeth, N., … Yin, H. (2021). Serum metabolomics identifies dysregulated pathways and potential metabolic biomarkers for hyperuricemia and gout. Arthritis & Rheumatology, 73(9), 1738-1748. doi: 10.1002/art.41733

Sitter, T. L., Vaughan, A. L., Schoof, M., Jackson, S. A., Glare, T. R., Cox, M. P., Fineran, P. C., Gardner, P. P., & Hurst, M. R. H. (2021). Evolution of virulence in a novel family of transmissible mega-plasmids. Environmental Microbiology, 23(9), 5289-5304. doi: 10.1111/1462-2920.15595

Smith, J., Banerjee, R., Waly, R., Urbano, A., Gimenez, G., Day, R., Eccles, M. R., Weeks, R. J., & Chatterjee, A. (2021). Locus-specific DNA methylation editing in melanoma cell lines using a CRISPR-based system. Cancers, 13, 5433. doi: 10.3390/cancers13215433

Smith, L. M., Jackson, S. A., Malone, L. M., Ussher, J. E., Gardner, P. P., & Fineran, P. C. (2021). The Rcs stress response inversely controls surface and CRISPR–Cas adaptive immunity to discriminate plasmids and phages. Nature Microbiology, 6, 162-172. doi: 10.1038/s41564-020-00822-7

Stanton, J.-A. L., O'Brien, R., Hall, R. J., Chernyavtseva, A., Ha, H. J., Jelley, L., Mace, P. D., … Treece, J. M., … Ussher, J. E., … Hore, T. A., Moser, T. V., Harfoot, R., Lawley, B., Quiñones‑Mateu, M. E., … Blaikie, R. (2021). Uncoupling molecular testing for SARS-CoV-2 from international supply chains. Frontiers in Public Health, 9, 808751. doi: 10.3389/fpubh.2021.808751

Sunde, H., Ryder, K., Bekhit, A. E.-D. A., & Carne, A. (2021). Analysis of peptides in a sheep beta lactoglobulin hydrolysate as a model to evaluate the effect of peptide amino acid sequence on bioactivity. Food Chemistry, 365, 130346. doi: 10.1016/j.foodchem.2021.130346

Taiaroa, G., Matalavea, B., Tafuna'i, M., Lacey, J. A., Price, D. J., Isaia, L., Leaupepe, H., … Williamson, D. A., & Jack, S. (2021). Scabies and impetigo in Samoa: A school-based clinical and molecular epidemiological study. Lancet Regional Health: Western Pacific, 6, 100081. doi: 10.1016/j.lanwpc.2020.100081

Takei, R., Cadzow, M., Markie, D., Bixley, M., Phipps-Green, A., Major, T. J., … Stamp, L. K., … Merriman, T. R., & Wei, W.-H. (2021). Trans-ancestral dissection of urate- and gout-associated major loci SLC2A9 and ABCG2 reveals primate-specific regulatory effects. Journal of Human Genetics, 66, 161-169. doi: 10.1038/s10038-020-0821-z

Te Morenga, L., Kruimer, D., McLean, R., Sabadel, A. J. M., Van Hale, R., Tatin, X., … Mann, J., & Merriman, T. (2021). Associations between sugars intakes and urinary sugars excretion and carbon stable isotope ratios in red blood cells as biomarkers of sugars intake in a predominantly Māori population. Frontiers in Nutrition, 8, 637267. doi: 10.3389/fnut.2021.637267

Thomas, L. J., Liggins, L., Banks, S. C., Beheregaray, L. B., Liddy, M., McCulloch, G. A., Waters, J. M., … Cumming, R. A., & Lamare, M. D. (2021). The population genetic structure of the urchin Centrostephanus rodgersii in New Zealand with links to Australia. Marine Biology, 168, 138. doi: 10.1007/s00227-021-03946-4

Timaxian, C., Vogel, C. F. A., Orcel, C., Vetter, D., Durochat, C., Chinal, C., … Diermeier, S. D., … Lazennec, G. (2021). Pivotal role for Cxcr2 in regulating tumor-associated neutrophil in breast cancer. Cancers, 13(11), 2584. doi: 10.3390/cancers13112584

Topless, R. K. G., Major, T. J., Florez, J. C., Hirschhorn, J. N., Cadzow, M., Dalbeth, N., Stamp, L. K., Wilcox, P. L., … Merriman, T. R. (2021). The comparative effect of exposure to various risk factors on the risk of hyperuricaemia: Diet has a weak causal effect. Arthritis Research & Therapy, 23(1), 75. doi: 10.1186/s13075-021-02444-8

Topless, R. K., Phipps-Green, A., Leask, M., Dalbeth, N., Stamp, L. K., Robinson, P. C., & Merriman, T. R. (2021). Gout, rheumatoid arthritis, and the risk of death related to coronavirus disease 2019: An analysis of the UK Biobank. ACR Open Rheumatology, 3(5), 333-340. doi: 10.1002/acr2.11252

Wang, Y., Morton, J. D., Bekhit, A. E.-D. A., Carne, A., & Mason, S. L. (2021). Amino acid sequences of lactoferrin from red deer (Cervus elaphus) milk and antimicrobial activity of its derived peptides lactoferricin and lactoferrampin. Foods, 10(6), 1305. doi: 10.3390/foods10061305

Wardell, S. J. T., Gauthier, J., Martin, L. W., Potvin, M., Brockway, B., Levesque, R. C., & Lamont, I. L. (2021). Genome evolution drives transcriptomic and phenotypic adaptation in Pseudomonas aeruginosa during 20 years of infection. Microbial Genomics, 7(11), 681. doi: 10.1099/mgen.0.000681

Wiggins, G. A. R., Black, M. A., Dunbier, A., Merriman, T. R., Pearson, J. F., & Walker, L. C. (2021). Variable expression quantitative trait loci analysis of breast cancer risk variants. Scientific Reports, 11(1), 7192. doi: 10.1038/s41598-021-86690-5

Wiggins, G. A. R., Black, M. A., Dunbier, A., Morley-Bunker, A. E., kConFab Investigators, Pearson, J. F., & Walker, L. C. (2021). Increased gene expression variability in BRCA1-associated and basal-like breast tumours. Breast Cancer Research & Treatment, 189, 363-375. doi: 10.1007/s10549-021-06328-y

Wold, J., Koepfli, K.-P., Galla, S. J., Eccles, D., Hogg, C. J., Le Lec, M. F., Guhlin, J., Santure, A. W., & Steeves, T. E. (2021). Expanding the conservation genomics toolbox: Incorporating structural variants to enhance genomic studies for species of conservation concern. Molecular Ecology, 30, 5949-5965. doi: 10.1111/mec.16141

Wu, R., Cooney, J., Tomes, S., Rebstock, R., Karunairetnam, S., Allan, A. C., Macknight, R. C., & Varkonyi-Gasic, E. (2021). RNAi-mediated repression of dormancy-related genes results in evergrowing apple trees. Tree Physiology, 41, 1510-1523. doi: 10.1093/treephys/tpab007

Xiong, H., Veedu, R. N., & Diermeier, S. D. (2021). Recent advances in oligonucleotide therapeutics in oncology. International Journal of Molecular Sciences, 22(7), 3295. doi: 10.3390/ijms22073295

Xue, X., Liu, Z., Li, X., Lu, J., Wang, C., Wang, X., … Merriman, T. R., … Cui, L. (2021). The efficacy and safety of citrate mixture vs sodium bicarbonate on urine alkalization in Chinese primary gout patients with benzbromarone: A prospective, randomized controlled study. Rheumatology, 60, 2661-2671. doi: 10.1093/rheumatology/keaa668

Zhang, H., Li, H., Phipps Green, A., Wang, M., Yan, F., Li, M., … Merriman, T. R., & Li, C. (2021). Association of low-level environmental exposure to cadmium and lead with gout flare using a cohort study design. Chemosphere, 280, 130648. doi: 10.1016/j.chemosphere.2021.130648

Abazari, O., Shafaei, Z., Divsalar, A., Eslami-Moghadam, M., Ghalandari, B., Saboury, A. A., & Moradi, A. (2020). Interaction of the synthesized anticancer compound of the methyl-glycine 1,10-phenanthroline platinum nitrate with human serum albumin and human hemoglobin proteins by spectroscopy methods and molecular docking. Journal of the Iranian Chemical Society, 17, 1601-1614. doi: 10.1007/s13738-020-01879-1

Ahmmed, M. K., Ahmmed, F., Tian, H., Carne, A., & Bekhit, A. E.-D. (2020). Marine omega-3 (n-3) phospholipids: A comprehensive review of their properties, sources, bioavailability, and relation to brain health. Comprehensive Reviews in Food Science & Food Safety, 19(1), 64-123. doi: 10.1111/1541-4337.12510

Ahmmed, M. K., Bunga, S., Stewart, I., Tian, H., Carne, A., & Bekhit, A. E.-D. A. (2020). Simple and efficient one-pot extraction method for phospholipidomic profiling of total oil and lecithin by phosphorus-31 nuclear magnetic resonance measurements. Journal of Agricultural & Food Chemistry, 61, 14286-14296. doi: 10.1021/acs.jafc.0c05803

Aitchison, A., Hakkaart, C., Day, R. C., Morrin, H. R., Frizelle, F. A., & Keenan, J. I. (2020). APC mutations are not confined to hotspot regions in early-onset colorectal cancer. Cancers, 12, 3829. doi: 10.3390/cancers12123829

Akhavan, S. R., Falahatkar, B., McCormick, S. P. A., & Lokman, P. M. (2020). Changes in lipid biology during ovarian development in farmed beluga sturgeon, Huso huso L. American Journal of Physiology: Regulatory, Integrative & Comparative Physiology, 319, R376-R386. doi: 10.1152/ajpregu.00364.2019

Alexander, J. L., Oliphant, A., Wilcockson, D. C., Brendler-Spaeth, T., Dircksen, H., & Webster, S. G. (2020). Pigment dispersing factors and their cognate receptors in a crustacean model, with new insights into distinct neurons and their functions. Frontiers in Neuroscience, 14, 595648. doi: 10.3389/fnins.2020.595648

Best, H. L., Clare, A. J., McDonald, K. O., Wicky, H. E., & Hughes, S. M. (2020). An altered secretome is an early marker of the pathogenesis of CLN6 Batten disease. Journal of Neurochemistry, 157, 764-780. doi: 10.1111/jnc.15285

Bhandari, B. K., Gardner, P. P., & Lim, C. S. (2020). Solubility-Weighted Index: Fast and accurate prediction of protein solubility. Bioinformatics, 36(18), 4691-4698. doi: 10.1093/bioinformatics/btaa578

Bhatlekar, S., Manne, B. K., Basak, I., Edelstein, L. C., Tugolukova, E., Stoller, M. L., … Bray, P. F. (2020). miR-125a-5p regulates megakaryocyte proplatelet formation via the actin bundling protein L-plastin. Blood, 136(15), 1760-1772. doi: 10.1182/blood.2020005230

Biggs, H., Parthasarathy, P., Gavryushkina, A., & Gardner, P. P. (2020). ncVarDB: A manually curated database for pathogenic non-coding variants and benign controls. Database, baaa105. doi: 10.1093/database/baaa105

Bodofsky, S., Merriman, T. R., Thomas, T. J., & Schlesinger, N. (2020). Advances in our understanding of gout as an auto-inflammatory disease. Seminars in Arthritis & Rheumatism, 50, 1089-1100. doi: 10.1016/j.semarthrit.2020.06.015

Boocock, J., Leask, M., Okada, Y., Asian Genetic Epidemiology Network (AGEN) Consortium, Matsuo, H., Shi, Y., … Cadzow, M., Gosling, A. L., Major, T. J., Horsfield, J. A., … Merriman, T. R. (2020). Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control. Human Molecular Genetics, 29(6), 923-943. doi: 10.1093/hmg/ddaa013

Bougen-Zhukov, N. M., Lee, Y. Y., Lee, J.-Y. J., Lee, P., & Loo, L.-H. (2020). P13K catalytic subunits α and β modulate cell death and IL-6 secretion induced by talc particles in human lung carcinoma cells. American Journal of Respiratory Cell & Molecular Biology, 62(3), 331-341. doi: 10.1165/rcmb.2019-0050OC

Brewer, N., Atkinson, J., Guilford, P., Print, C., Blakely, T., & Teng, A. (2020). An estimate of limited duration cancer prevalence in New Zealand using 'big' data. New Zealand Medical Journal, 133(1514), 49-62. Retrieved from https://www.nzma.org.nz/journal

Brown, A., Thatje, S., Pond, D., & Oliphant, A. (2020). Phospholipid fatty acids are correlated with critical thermal tolerance but not with critical pressure tolerance in the shallow-water shrimp Palaemon varians during sustained exposure to low temperature. Journal of Experimental Marine Biology & Ecology, 529, 151394. doi: 10.1016/j.jembe.2020.151394

Burrow, K., Young, W., Hammer, N., Safavi, S., Scholze, M., McConnell, M., Carne, A., Barr, D., Reid, M., & Bekhit, A. E.-D. (2020). The effect of the supplementation of a diet low in calcium and phosphorus with either sheep milk or cow milk on the physical and mechanical characteristics of bone using a rat model. Foods, 9(8), 1070. doi: 10.3390/foods9081070

Burrow, K., Young, W., McConnell, M., Carne, A., Barr, D., Reid, M., & Bekhit, A. E.-D. (2020). The effect of sheep and cow milk supplementation of a low calcium diet on the distribution of macro and trace minerals in the organs of weanling rats. Nutrients, 12(3), 594. doi: 10.3390/nu12030594

Calvo-Flores Guzmán, B., Chaffey, T. E., Palpagama, T. H., Waters, S., Boix, J., Tate, W. P., Peppercorn, K., … Kwakowsky, A. (2020). The interplay between beta-amyloid 1-42 (Aβ_1-42)-induced hippocampal inflammatory response, p-tau, vascular pathology, and their synergistic contributions to neuronal death and behavioral deficits. Frontiers in Molecular Neuroscience, 13, 522073. doi: 10.3389/fnmol.2020.552073

Chang, K.-C., Diermeier, S. D., Yu, A. T., Brine, L. D., Russo, S., Bhatia, S., … Spector, D. L. (2020). MaTAR25 lncRNA regulates the Tensin1 gene to impact breast cancer progression. Nature Communications, 11, 6438. doi: 10.1038/s41467-020-20207-y

Chapman, L. M., Spies, N., Pai, P., Lim, C. S., Carroll, A., Narzisi, G., … Zook, J. M. (2020). A crowdsourced set of curated structural variants for the human genome. PLoS Computational Biology, 16(6), e1007933. doi: 10.1371/journal.pcbi.1007933

Chen, H., Zhao, L., Liu, F., Chen, S., Hu, Z., Chen, L., … Merriman, T. R., & Min, J. Z. (2020). Urate in fingernail represents the deposition of urate burden in gout patients. Scientific Reports, 10, 15575. doi: 10.1038/s41598-020-72505-6

Chin, C. V., Antony, J., Ketharnathan, S., Labudina, A., Gimenez, G., Parsons, K. M., … Braithwaite, A., Guilford, P., … Horsfield, J. A. (2020). Cohesin mutations are synthetic lethal with stimulation of WNT signaling. eLIFE, 9, e61405. doi: 10.7554/eLife.61405

Chung, P., Logge, W. B., Riordan, B. C., Haber, P. S., Merriman, M. E., Phipps-Green, A., Topless, R. K., Merriman, T. R., Conner, T., & Morley, K. C. (2020). Genetic polymorphisms on OPRM1, DRD2, DRD4, and COMT in young adults: Lack of association with alcohol consumption. Frontiers in Psychiatry, 11, 549429. doi: 10.3389/fpsyt.2020.549429

Chyou, T.-y., Nishtala, R., & Nishtala, P. S. (2020). Comparative risk of Parkinsonism associated with olanzapine, risperidone and quetiapine in older adults: A propensity score matched cohort study. Pharmacoepidemiology & Drug Safety, 29, 692-700. doi: 10.1002/pds.5007

Desguin, B., Urdiain-Arraiza, J., Da Costa, M., Fellner, M., Hu, J., Hausinger, R. P., … Soumillion, P. (2020). Uncovering a superfamily of nickel-dependent hydroxyacid racemases and epimerases. Scientific Reports, 10, 18123. doi: 10.1038/s41598-020-74802-6

Duncan, E. J., Leask, M. P., & Dearden, P. K. (2020). Genome architecture facilitates phenotypic plasticity in the honeybee (Apis mellifera). Molecular Biology & Evolution, 37(7), 1964-1978. doi: 10.1093/molbev/msaa057

Eom, J., Park, S. M., Feisst, V., Chen, C.-J. J., Mathy, J. E., McIntosh, J. D., … Black, M. A., … Dunbar, P. R. (2020). Distinctive subpopulations of stromal cells are present in human lymph nodes infiltrated with melanoma. Cancer Immunology Research, 8(8), 1-14. doi: 10.1158/2326-6066.Cir-19-0796

Fagerlund, R. D., Forsman, J. A., Biswas, S., Vass, I., Davies, F. K., Summerfield, T. C., & Eaton-Rye, J. J. (2020). Stabilization of Photosystem II by the PsbT protein impacts photodamage, repair and biogenesis. Biochimica et Biophysica Acta: Bioenergetics, 1861, 148234. doi: 10.1016/j.bbabio.2020.148234

Fellner, M., Huizenga, K. G., Hausinger, R. P., & Hu, J. (2020). Crystallographic characterization of a tri-Asp metal-binding site at the three-fold symmetry axis of LarE. Scientific Reports, 10, 5830. doi: 10.1038/s41598-020-62847-6

Fellner, M., Lentz, C. S., Jamieson, S. A., Brewster, J. L., Chen, L., Bogyo, M., & Mace, P. D. (2020). Structural basis for the inhibitor and substrate specificity of the unique Fph serine hydrolases of Staphylococcus aureus. ACS Infectious Diseases, 6(10), 2771-2782. doi: 10.1021/acsinfecdis.0c00503

Ferraro-Peyret, C., Askarian-Amiri, M. E., Sarkar, D., Joseph, W. R., Hansji, H., Baguley, B. C., & Leung, E. Y. (2020). SOX2OT long noncoding RNA is regulated by the UPR in oestrogen receptor-positive breast cancer. Sci, 2(2), 24. doi: 10.3390/sci2020024

Filipčík, P., Latham, S. L., Cadell, A. L., Day, C. L., Croucher, D. R., & Mace, P. D. (2020). A cryptic tubulin-binding domain links MEKK1 to curved tubulin protomers. PNAS, 117(35), 21308-21318. doi: 10.1073/pnas.2006429117

Forsman, J. A., & Eaton-Rye, J. J. (2020). The D1:Ser268 residue of Photosystem II contributes to an alternative pathway for Q_B protonation in the absence of bound bicarbonate. FEBS Letters, 594(18), 2953-2964. doi: 10.1002/1873-3468.13880

Forsman, J. A., Fagerlund, R. D., Biswas, S., Summerfield, T. C., & Eaton-Rye, J. J. (2020). The PsbT protein modifies the bicarbonate-binding environment of Photosystem II. New Zealand Journal of Botany, 58(4), 406-421. doi: 10.1080/0028825X.2020.1772320

Gemmell, N. J., Rutherford, K., Prost, S., Tollis, M., Winter, D., Macey, J. R., … Gardner, P. P., … Hore, T. A., … Dussex, N., Taylor, H., Abe, H., Bond, D. M., … Ngatiwai Trust Board. (2020). The tuatara genome reveals ancient features of amniote evolution. Nature, 584, 403-409. doi: 10.1038/s41586-020-2561-9

Good, N. M., Fellner, M., Demirer, K., Hu, J., Hausinger, R. P., & Martinez-Gomez, N. C. (2020). Lanthanide-dependent alcohol dehydrogenases require an essential aspartate residue for metal coordination and enzymatic function. Journal of Biological Chemistry, 295(24), 8272-8284. doi: 10.1074/jbc.RA120.013227

Handley, T. N. G., Tan, H.-X., Rutledge, M. T., Brewitz, H. H., Tyndall, J. D. A., Kleffmann, T., Butler, M. I., Poulter, R. T. M., & Wilbanks, S. M. (2020). Engineered biosynthesis of cyclotides. New Zealand Journal of Botany, 58(4), 358-377. doi: 10.1080/0028825X.2020.1791914

Harrop, T. W. R., Guhlin, J., McLaughlin, G. M., Permina, E., Stockwell, P., Gilligan, J., Le Lec, M. F., Gruber, M. A. M., … Lovegrove, M., … Dearden, P. K. (2020). High-quality assemblies for three invasive social wasps from the Vespula genus. Genes Genomes Genetics, 10, 3479-3488. doi: 10.1534/g3.120.401579

Harrop, T. W. R., Le Lec, M. F., Jauregui, R., Taylor, S. E., Inwood, S. N., van Stijn, T., … Skelly, J., … Dearden, P. K. (2020). Genetic diversity in invasive populations of Argentine stem weevil associated with adaptation to biocontrol. Insects, 11(7), 441. doi: 10.3390/insects11070441

Helliwell, A. M., Sweetman, E. C., Stockwell, P. A., Edgar, C. D., Chatterjee, A., & Tate, W. P. (2020). Changes in DNA methylation profiles of myalgic encephalomyelitis/chronic fatigue syndrome patients reflect systemic dysfunctions. Clinical Epigenetics, 12(1), 167. doi: 10.1186/s13148-020-00960-z

Herridge, R. P., Macknight, R. C., & Brownfield, L. R. (2020). Prospects for F1 hybrid production in ryegrass. New Zealand Journal of Agricultural Research, 63(3), 405-415. doi: 10.1080/00288233.2018.1559867

Ho, J., Zhao, M., Wojcik, S., Taiaroa, G., Butler, M., & Poulter, R. (2020). The application of the CRISPR-Cas9 system in Pseudomonas syringae pv. actinidiae. Journal of Medical Microbiology, 69, 478-486. doi: 10.1099/jmm.0.001124

Hoque, K. M., Dixon, E. E., Lewis, R. M., Allan, J., Gamble, G. D., Phipps-Green, A. J., … Stamp, L. K., Merriman, T. R., … Woodward, O. M. (2020). The ABCG2 Q141K hyperuricemia and gout associated variant illuminates the physiology of human urate excretion. Nature Communications, 11, 2767. doi: 10.1038/s41467-020-16525-w

Hou, Y., Carne, A., McConnell, M., Bekhit, A. A., Mros, S., Amagase, K., & Bekhit, A. E.-D. A. (2020). In vitro antioxidant and antimicrobial activities, and in vivo anti-inflammatory activity of crude and fractionated PHNQs from sea urchin (Evechinus chloroticus). Food Chemistry, 316, 126339. doi: 10.1016/j.foodchem.2020.126339

Hou, Y., Carne, A., McConnell, M., Mros, S., Bekhit, A. A., & Bekhit, A. E.-D. A. (2020). Macroporous resin extraction of PHNQs from Evechinus chloroticus sea urchin and their in vitro antioxidant, anti-bacterial and in silico anti-inflammatory activities. LWT, 131, 109817. doi: 10.1016/j.lwt.2020.109817

Hou, Y., Carne, A., McConnell, M., Mros, S., Vasileva, E. A., Mishchenko, N. P., Burrow, K., Wang, K., … Bekhit, A. E.-D. A. (2020). PHNQ for Evechinus chloroticus sea urchin supplemented with calcium promotes mineralization in Saos-2 human bone cell line. Marine Drugs, 18(7), 373. doi: 10.3390/md18070373

Huber, R. J., Hughes, S. M., Liu, W., Morgan, A., Tuxworth, R. I., & Russell, C. (2020). The contribution of multicellular model organisms to neuronal ceroid lipofuscinosis research. Biochimica et Biophysica Acta: Molecular Basis of Disease, 1866, 165614. doi: 10.1016/j.bbadis.2019.165614

Jones, G. T., Marsman, J., Bhat, B., Phillips, V. L., Chatterjee, A., Rodger, E. J., Williams, M. J. A., van Rij, A. M., & McCormick, S. P. A. (2020). DNA methylation profiling identifies a high effect genetic variant for lipoprotein(a) levels. Epigenetics, 15(9), 949-958. doi: 10.1080/15592294.2020.1739797

Kader, T., Porteous, C. M., Jones, G. T., Dickerhof, N., Narayana, V. K., Tull, D., Taraknath, S., & McCormick, S. P. A. (2020). Ribose-cysteine protects against the development of atherosclerosis in apoE-deficient mice. PLoS ONE, 15(2), e0228415. doi: 10.1371/journal.pone.0228415

Khaing, E. P., Zhong, V., & Eaton-Rye, J. J. (2020). An updated system for the targeted mutagenesis of the psbDI:psbC operon in Synechocystis sp. PCC 6803: Mutations targeting Asp460 in CP43 of Photosystem II reduce oxygen-evolving activity and perturb electron transfer in the quinone-Fe-acceptor complex. New Zealand Journal of Botany, 58(4), 389-405. doi: 10.1080/0028825X.2020.1771383

Kim, G. H., Lee, Y.-S., Jung, J. S., Koh, Y.-J., Poulter, R. T. M., & Butler, M. (2020). Genomic analyses of Pseudomonas syringae pv. actinidiae isolated in Korea suggest the transfer of the bacterial pathogen via kiwifruit pollen. Journal of Medical Microbiology, 69, 132-138. doi: 10.1099/jmm.0.001115

Klück, V., van Deuren, R. C., Cavalli, G., Shaukat, A., Arts, P., Cleophas, M. C., … Stamp, L. K., … Merriman, T. R., … Joosten, L. A. B. (2020). Rare genetic variants in interleukin-37 link this anti-inflammatory cytokine to the pathogenesis and treatment of gout. Annals of the Rheumatic Diseases, 79(4), 536-544. doi: 10.1136/annrheumdis-2019-216233

Knapp, K. M., Sullivan, R., Murray, J., Gimenez, G., Arn, P., D'Souza, P., … Bicknell, L. S. (2020). Linked-read genome sequencing identifies biallelic pathogenic variants in DONSON as a novel cause of Meier-Gorlin syndrome. Journal of Medical Genetics, 57, 195-202. doi: 10.1136/jmedgenet-2019-106396

Krishnan, M., Murphy, R., Okesene-Gafa, K. A. M., Ji, M., Thompson, J. M. D., Taylor, R. S., Merriman, T. R., … McKinlay, C. J. D. (2020). The Pacific-specific CREBRF rs373863828 allele protects against gestational diabetes mellitus in Māori and Pacific women with obesity. Diabetologia, 63(10), 2169-2176. doi: 10.1007/s00125-020-05202-8

Kvach, M. V., Barzak, F. M., Harjes, S., Schares, H. A. M., Kurup, H. M., Jones, K. F., … Krause, K. L., … Filichev, V. (2020). Differential inhibition of APOBEC3 DNA-mutator isozymes by fluoro- versus non-fluoro-substituted 2'-deoxyzebularine embedded in single-stranded DNA. ChemBioChem, 21, 1028-1035. doi: 10.1002/cbic.201900505

Lasham, A., Fitzgerald, S. J., Knowlton, N., Robb, T., Tsai, P., Black, M. A., … Mehta, S. Y., Harris, G., … Print, C. G. (2020). A predictor of early disease recurrence in patients with breast cancer using a cell-free RNA and protein liquid biopsy. Clinical Breast Cancer, 20(2), 108-116. doi: 10.1016/j.clbc.2019.07.003

Leask, M. P., Sumpter, N. A., Lupi, A. S., Vazquez, A. I., Reynolds, R. J., Mount, D. B., & Merriman, T. R. (2020). The shared genetic basis of hyperuricemia, gout, and kidney function. Seminars in Nephrology, 40(6), 586-599. doi: 10.1016/j.semnephrol.2020.12.002

Lester, P. J., Bulgarella, M., Baty, J. W., Dearden, P. K., Guhlin, J., & Kean, J. M. (2020). The potential for a CRISPR gene drive to eradicate or suppress globally invasive social wasps. Scientific Reports, 10, 12398. doi: 10.1038/s41598-020-69259-6

Lovegrove, M. R., Knapp, R. A., Duncan, E. J., & Dearden, P. K. (2020). Drosophila melanogaster and worker honeybees (Apis mellifera) do not require olfaction to be susceptible to honeybee queen mandibular pheromone. Journal of Insect Physiology, 127, 104154. doi: 10.1016/j.jinsphys.2020.104154

Lucere, K. M., O'Malley, M. M. R., & Diermeier, S. D. (2020). Functional screening techniques to identify long non-Coding RNAs as therapeutic targets in cancer. Cancers, 12(12). doi: 10.3390/cancers12123695

Malone, L. M., Warring, S. L., Jackson, S. A., Warnecke, C., Gardner, P. P., Gumy, L. F., & Fineran, P. C. (2020). A jumbo phage that forms a nucleus-like structure evades CRISPR-Cas DNA targeting but is vulnerable to type III RNA-based immunity. Nature Microbiology, 5, 48-55. doi: 10.1038/s41564-019-0612-5

Marsman, J., Gimenez, G., Day, R. C., Horsfield, J. A., & Jones, G. T. (2020). A non-coding genetic variant associated with abdominal aortic aneurysm alters ERG gene regulation. Human Molecular Genetics, 29(4), 554-565. doi: 10.1093/hmg/ddz256

Mathiesen, S. N., Lock, J. L., Schoderboeck, L., Abraham, W. C., & Hughes, S. M. (2020). CNS transduction benefits of AAV-PHP.eB over AAV9 are dependent on administration route and mouse strain. Molecular Therapy: Methods & Clinical Development, 19, 447-458. doi: 10.1016/j.omtm.2020.10.011

McGregor, R., Whitcombe, A. L., Sheen, C. R., Dickson, J. M., Day, C. L., Carlton, L. H., … Bennett, J., Baker, M. G., … Moreland, N. J. (2020). Collaborative networks enable the rapid establishment of serological assays for SARS-CoV-2 during nationwide lockdown in New Zealand. PeerJ, 8, e9863. doi: 10.7717/peerj.9863

Mehta, S., Algie, M., Al-Jabry, T., McKinney, C., Kannan, S., Verma, C. S., … Parker, K., Henderson, L., Gould, M. L., Bhatia, P., Harfoot, R., … Kleffmann, T., … Woolley, A. G., … Braithwaite, A. (2020). Critical role for cold shock protein YB-1 in cytokinesis. Cancers, 12, 2473. doi: 10.3390/cancers12092473

Mehta, S., McKinney, C., Algie, M., Verma, C. S., Kannan, S., Harfoot, R., … Gould, M. L., Parker, K., … Cunliffe, H. E., … Kleffmann, T., Braithwaite, A. W., & Woolley, A. G. (2020). Dephosphorylation of YB-1 is required for nuclear localisation during G₂ phase of the cell cycle. Cancers, 12(2), 315. doi: 10.3390/cancers12020315

Metcalfe, L. K., Krishnan, M., Turner, N., Yaghootkar, H., Merry, T. L., Dewes, O., … Stamp, L. K., Merriman, T. R., … Murphy, R. (2020). The Māori and Pacific specific CREBRF variant and adult height. International Journal of Obesity, 44, 748-752. doi: 10.1038/s41366-019-0437-6

Mettrick, K., Hassan, K., Lamont, I., & Reid, D. (2020). The Iron-chelator, N,N'-bis (2-hydroxybenzyl) ethylenediamine-N,N'-diacetic acid is an effective colistin adjunct against clinical strains of biofilm-dwelling Pseudomonas aeruginosa. Antibiotics, 9(4), 144. doi: 10.3390/antibiotics9040144

Middleton, A. J., Zhu, J., & Day, C. L. (2020). The RING domain of RING Finger 12 efficiently builds degradative ubiquitin chains. Journal of Molecular Biology, 432, 3790-3801. doi: 10.1016/j.jmb.2020.05.001

Morgan, B. M., Brown, A. N., Deo, N., Harrop, T. W. R., Taiaroa, G., Mace, P. D., Wilbanks, S. M., Merriman, T. R., Williams, M. J. A., & McCormick, S. P. A. (2020). Nonsynonymous SNPs in LPA homologous to plasminogen deficiency mutants represent novel null apo(a) alleles. Journal of Lipid Research, 61, 432-444. doi: 10.1194/jlr.M094540

Mungure, T. E., Farouk, M. M., Birch, E. J., Carne, A., Staincliffe, M., Stewart, I., & Bekhit, A. E.-D. A. (2020). Effect of PEF treatment on meat quality attributes, ultrastructure and metabolite profiles of wet and dry aged venison Longissimus dorsi muscle. Innovative Food Science & Emerging Technologies, 65, 102457. doi: 10.1016/j.ifset.2020.102457

Murphy, E. L., Singh, K. V., Avila, B., Kleffmann, T., Gregory, S. T., Murray, B. E., Krause, K. L., … Jogl, G. (2020). Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis. Scientific Reports, 10, 16301. doi: 10.1038/s41598-020-73199-6

Nakayama, A., Nakatochi, M., Kawamura, Y., Yamamoto, K., Nakaoka, H., Shimizu, S., … Major, T. J., Merriman, T. R., … on behalf of Japan Gout Genomics Consortium (Japan Gout). (2020). Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients. Annals of the Rheumatic Diseases, 79, 657-665. doi: 10.1136/annrheumdis-2019-216644

Narang, R. K., Gamble, G., Phipps-Green, A. J., Topless, R., Cadzow, M., Stamp, L. K., Merriman, T. R., & Dalbeth, N. (2020). Do serum urate-associated genetic variants influence gout risk in people on diuretics? Analysis of the UK Biobank. Journal of Rheumatology, 47, 1704-1711. doi: 10.3899/jrheum.191005

Nilsen, A. R., Wang, X. Y., Soop, K., Cooper, J. A., Ridley, G. S., Wallace, M., Summerfield, T. C., Brown, C. M., & Orlovich, D. A. (2020). Purple haze: Cryptic purple sequestrate Cortinarius in New Zealand. Mycologia, 112(3), 588-605. doi: 10.1080/00275514.2020.1730120

Nishtala, P. S., & Chyou, T.-y. (2020). Identifying drug combinations associated with acute kidney injury using association rules method. Pharmacoepidemiology & Drug Safety, 29, 467-473. doi: 10.1002/pds.4960

Nishtala, P. S., Gill, S., & Chyou, T.-y. (2020). Analysis of the US FDA adverse event reporting system to identify adverse cardiac events associated with hydroxychloroquine in older adults. Pharmacoepidemiology & Drug Safety, 29, 1689-1695. doi: 10.1002/pds.5155

Oliphant, A., Hawkes, M. K. N., Cridge, A. G., & Dearden, P. K. (2020). Transcriptomic characterisation of neuropeptides and their putative cognate G protein-coupled receptors during late embryo and stage-1 juvenile development of the Aotearoa-New Zealand crayfish, Paranephrops zealandicus. General & Comparative Endocrinology, 292, 113443. doi: 10.1016/j.ygcen.2020.113443

Petersen, G. E. L., Fennessy, P. F., Van Stijn, T. C., Clarke, S. M., Dodds, K. G., & Dearden, P. K. (2020). Genotyping-by-sequencing of pooled drone DNA for the management of living honeybee (Apis mellifera) queens in commercial beekeeping operations in New Zealand. Apidologie, 51, 545-556. doi: 10.1007/s13592-020-00741-w

Pinilla-Redondo, R., Shehreen, S., Marino, N. D., Fagerlund, R. D., Brown, C. M., Sørensen, S. J., Fineran, P. C., & Bondy-Denomy, J. (2020). Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements. Nature Communications, 11(1), 5652. doi: 10.1038/s41467-020-19415-3

Pinkney, H. R., Wright, B. M., & Diermeier, S. D. (2020). The lncRNA toolkit: Databases and in silico tools for lncRNA analysis. Non-coding RNA, 6, 49. doi: 10.3390/ncrna6040049

Rollie, C., Chevallereau, A., Watson, B. N. J., Chyou, T.-y., Fradet, O., McLeod, I., Fineran, P. C., Brown, C. M., … Westra, E. R. (2020). Targeting of temperate phages drives loss of type I CRISPR-Cas systems. Nature, 578, 149-153. doi: 10.1038/s41586-020-1936-2

Ryder, K., Ali, M. A., Billakanti, J., & Carne, A. (2020). Evaluation of dairy co-product containing composite solutions for the formation of bioplastic films. Journal of Polymers & the Environment, 28, 725-736. doi: 10.1007/s10924-019-01635-4

Salavati, M., Caulton, A., Clark, R., Gazova, I., Smith, T. P. L., Worley, K. C., … on behalf of The Ovine FAANG Project Consortium. (2020). Global analysis of transcription start sites in the new ovine reference genome (Oar rambouillet v1.0). Frontiers in Genetics, 11, 580580. doi: 10.3389/fgene.2020.580580

Sheridan, K. J., Duncan, E. J., Eaton-Rye, J. J., & Summerfield, T. C. (2020). The diversity and distribution of D1 proteins in cyanobacteria. Photosynthesis Research, 145(2), 111-128. doi: 10.1007/s11120-020-00762-7

Shrestha, R., Petley, E. V., Farrand, K. J., Jamieson, S. A., Jiao, W., Teesdale-Spittle, P. H., … Mace, P. D., … Rendle, P. M. (2020). The synthesis and anti-tumour properties of poly ethoxy ethyl glycinamide (PEE-G) scaffolds with multiple PD-1 peptides attached. ChemMedChem, 15, 1128-1138. doi: 10.1002/cmdc.202000221

Söderholm, A., Newton, M. S., Patrick, W. M., & Selmer, M. (2020). Structure and kinetics of indole-3-glycerol phosphate synthase from Pseudomonas aeruginosa: Decarboxylation is not essential for indole formation. Journal of Biological Chemistry, 295(47), 15948-15956. doi: 10.1074/jbc.RA120.014936

Stamp, L. K., Chapman, P. T., Barclay, M., Horne, A., Frampton, C., Merriman, T. R., Wright, D. F. B., … Dalbeth, N. (2020). Relationships between allopurinol dose, oxypurinol concentration and urate-lowering response: In search of a minimum effective oxypurinol concentration. Clinical & Translational Science, 13, 110-115. doi: 10.1111/cts.12686

Sweetman, E., Kleffmann, T., Edgar, C., de Lange, M., Vallings, R., & Tate, W. (2020). A SWATH-MS analysis of Myalgic Encephalomyelitis/Chronic Fatigue Syndrome peripheral blood mononuclear cell proteomes reveals mitochondrial dysfunction. Journal of Translational Medicine, 18, 365. doi: 10.1186/s12967-020-02533-3

Tai, V., Narang, R. K., Gamble, G., Cadzow, M., Stamp, L. K., Merriman, T. R., & Dalbeth, N. (2020). Do serum urate-associated genetic variants differentially contribute to gout risk according to body mass index? Analysis of the UK Biobank. Arthritis & Rheumatology, 72(7), 1184-1191. doi: 10.1002/art.41219

Tan, L. P., Tan, G. W., Sivanesan, V. M., Goh, S. L., Ng, X. J., Lim, C. S., … the Malaysian Nasopharyngeal Carcinoma Study Group. (2020). Systematic comparison of plasma EBV DNA, anti-EBV antibodies and miRNA levels for early detection and prognosis of Nasopharyngeal Carcinoma. International Journal of Cancer, 146, 2336-2347. doi: 10.1002/ijc.32656

Taylor, S., & Taylor, S. (2020). When ‘#xmasangels’ tweet: A reception study of craftivism as Christian witness. Ecclesial Practices, 7, 143-162. doi: 10.1163/22144471-BJA10016

Trevelyan, S. J., Brewster, J. L., Burgess, A. E., Crowther, J. M., Cadell, A. L., Parker, B. L., … Mace, P. D. (2020). Structure-based mechanism of preferential complex formation by apoptosis signal-regulating kinases. Science Signaling, 13(622), eaay6318. doi: 10.1126/scisignal.aay6318

Vinnakota, C., Govindpani, K., Tate, W. P., Peppercorn, K., Anekal, P. V., Waldvogel, H. J., … Kwakowsky, A. (2020). An α5 GABAA receptor inverse agonist, α5IA, attenuates amyloid beta-induced neuronal death in mouse hippocampal cultures. International Journal of Molecular Sciences, 21(9), 3284. doi: 10.3390/ijms21093284

Wang, Z., Zhao, Y., Phipps-Green, A., Liu-Bryan, R., Ceponis, A., Boyle, D. L., … Merriman, T. R., … Terkeltaub, R. (2020). Differential DNA methylation of networked signaling, transcriptional, innate and adaptive immunity, and osteoclastogenesis genes and pathways in gout. Arthritis & Rheumatology, 72(5), 802-814. doi: 10.1002/art.41173

Wilson, P. W., Marshall, C., Bayer-Giraldi, M., & Mateo, M. A. (2020). Evidence for transition of metastable ice to hexagonal ice in bulk solutions at relatively high temperatures. International Journal of Geosciences, 11(8), 493-500. doi: 10.4236/ijg.2020.118025

Winbo, A., Earle, N., Marcondes, L., Crawford, J., Prosser, D. O., Love, D. R., Merriman, T. R., Cadzow, M., … Skinner, J. R. (2020). Genetic testing in Polynesian long QT syndrome probands reveals a lower diagnostic yield and an increased prevalence of rare variants. Heart Rhythm, 17(8), 1304-1311. doi: 10.1016/j.hrthm.2020.03.015

Wrigley, R., Phipps-Green, A. J., Topless, R. K., Major, T. J., Cadzow, M., Riches, P., … Stamp, L. K., … Merriman, T. R. (2020). Pleiotropic effect of the ABCG2 gene in gout: Involvement in serum urate levels and progression from hyperuricemia to gout. Arthritis Research & Therapy, 22, 45. doi: 10.1186/s13075-020-2136-z

Yeung, J. H. Y., Calvo-Flores Guzmán, B., Palpagama, H. T., Ethiraj, J., Zhai, Y., Tate, W. P., Peppercorn, K., … Kwakowsky, A. (2020). Amyloid-beta_1-42 induced glutamatergic receptor and transporter expression changes in the mouse hippocampus. Journal of Neurochemistry, 155, 62-80. doi: 10.1111/jnc.15099

Yeung, J. H. Y., Palpagama, T. H., Tate, W. P., Peppercorn, K., Waldvogel, H. J., Faull, R. L. M., & Kwakowsky, A. (2020). The acute effects of amyloid-Beta_1–42 on glutamatergic receptor and transporter expression in the mouse hippocampus. Frontiers in Neuroscience, 13, 1427. doi: 10.3389/fnins.2019.01427

Yu, X.-W., Pandey, K., Katzman, A. C., & Alberini, C. M. (2020). A role for CIM6P/IGF2 receptor in memory consolidation and enhancement. eLIFE, 9, e54781. doi: 10.7554/eLife.54781

Zaidi, F., Narang, R. K., Phipps-Green, A., Gamble, G. G., Tausche, A.-K., So, A., … Stamp, L. K., Merriman, T. R., & Dalbeth, N. (2020). Systematic genetic analysis of early-onset gout: ABCG2 is the only associated locus. Rheumatology, 59, 2544-2549. doi: 10.1093/rheumatology/kez685

Zamanpoor, M., Ghaedi, H., & Omrani, M. D. (2020). Association of SPOCK1 gene locus with rheumatoid arthritis in Caucasians. Meta Gene, 26, 100806. doi: 10.1016/j.mgene.2020.100806

Zamanpoor, M., Ghaedi, H., & Omrani, M. D. (2020). The genetic basis for the inverse relationship between rheumatoid arthritis and schizophrenia. Molecular Genetics & Genomic Medicine, 8, e1483. doi: 10.1002/mgg3.1483

Zou, D., Day, R., Cocadiz, J. A., Parackal, S., Mitchell, W., Black, M. A., … Jackson, C., & Guilford, P. (2020). Circulating tumor DNA is a sensitive marker for routine monitoring of treatment response in advanced colorectal cancer. Carcinogenesis, 41(11), 1507-1517. doi: 10.1093/carcin/bgaa102

Aloi, S., Davies, C. G., Karplus, P. A., Wilbanks, S. M., & Jameson, G. N. L. (2019). Substrate specificity in thiol dioxygenases. Biochemistry, 58, 2398-2407. doi: 10.1021/acs.biochem.9b00079

Basak, I., Bhatlekar, S., Manne, B. K., Stoller, M., Hugo, S., Kong, X., … Bray, P. F. (2019). miR-15a-5p regulates expression of multiple proteins in the megakaryocyte GPVI signaling pathway. Journal of Thrombosis & Haemostasis, 17(3), 511-524. doi: 10.1111/jth.14382

Beetham, H., Chen, A., Telford, B. J., Single, A., Jarman, K. E., Lackovic, K., … Guilford, P. (2019). A high-throughput screen to identify novel synthetic lethal compounds for the treatment of E-cadherin-deficient cells. Scientific Reports, 9, 12511. doi: 10.1038/s41598-019-48929-0

Bhatlekar, S., Basak, I., Edelstein, L. C., Campbell, R. A., Lindsey, C. R., Italiano, Jr, J. E., … Bray, P. F. (2019). Anti-apoptotic BCL2L2 increases megakaryocyte proplatelet formation in cultures of human cord blood. Haematologica, 104(10), 2075-2083. doi: 10.3324/haematol.2018.204685

Bouckaert, R., Vaughan, T. G., Barido-Sottani, J., Duchêne, S., Fourment, M., Gavryushkina, A., … Drummond, A. J. (2019). BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology, 15(4), e1006650. doi: 10.1371/journal.pcbi.1006650

Bougen-Zhukov, N., Nouri, Y., Godwin, T., Taylor, M., Hakkaart, C., Single, A., Brew, T., Permina, E., Chen, A., Black, M. A., & Guilford, P. (2019). Allosteric AKT inhibitors target synthetic lethal vulnerabilities in E-cadherin-deficient cells. Cancers, 11(9), 1359. doi: 10.3390/cancers11091359

Brown, A., Thatje, S., Martinez, A., Pond, D., & Oliphant, A. (2019). The effect of high hydrostatic pressure acclimation on acute temperature tolerance and phospholipid fatty acid composition in the shallow-water shrimp Palaemon varians. Journal of Experimental Marine Biology & Ecology, 514-515, 103-109. doi: 10.1016/j.jembe.2019.03.011

Burrow, K., Young, W., Carne, A., McConnell, M., Hammer, N., Scholze, M., & Bekhit, A. E.-D. (2019). Consumption of sheep milk compared to cow milk can affect trabecular bone ultrastructure in a rat model. Food & Function, 10, 163-171. doi: 10.1039/c8fo01598h

Cain, J. T., Likhite, S., White, K. A., Timm, D. J., Davis, S. S., Johnson, T. B., … Hughes, S. M., … Weimer, J. M. (2019). Gene therapy corrects brain and behavioral pathologies in CLN6-Batten disease. Molecular Therapy, 27(10), 1836-1847. doi: 10.1016/j.ymthe.2019.06.015

Casas Garcia, G. P., Perugini, M. A., Lamont, I. L., & Maher, M. J. (2019). The purification of the σ^FpvI/FpvR₂₀ and σ^PvdS/FpvR₂₀ protein complexes is facilitated at room temperature. Protein Expression & Purification, 160, 11-18. doi: 10.1016/j.pep.2019.03.005

Chagné, D., Ryan, J., Saeed, M., Van Stijn, T., Brauning, R., Clarke, S., … Wilcox, P., … Lewis, D. (2019). A high density linkage map and quantitative trait loci for tree growth for New Zealand mānuka (Leptospermum scoparium). New Zealand Journal of Crop & Horticultural Science, 47(4), 261-272. doi: 10.1080/01140671.2018.1540437

Chyou, T., & Brown, C. M. (2019). Prediction and diversity of tracrRNAs from type II CRISPR-Cas systems. RNA Biology, 16(4), 423-434. doi: 10.1080/15476286.2018.1498281

Clark, D. W., Okada, Y., Moore, K. H. S., Mason, D., Pirastu, N., Gandin, I., … Bixley, M. J., … Merriman, T. R., … Wilson, J. F. (2019). Associations of autozygosity with a broad range of human phenotypes. Nature Communications, 10, 4957. doi: 10.1038/s41467-019-12283-6

Crake, R. L. I., Phillips, E., Kleffmann, T., & Currie, M. J. (2019). Co-culture with human breast adipocytes differentially regulates protein abundance in breast cancer cells. Cancer Geonomics & Proteomics, 16(5), 319-332. doi: 10.21873/cgp.20137

Dong, Y., Gupta, S., Sievers, R., Wargent, J. J., Wheeler, D., Putterill, J., Macknight, R., … Dijkwel, P. P. (2019). Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand's high ultraviolet B radiation environment. BMC Genomics, 20, 838. doi: 10.1186/s12864-019-6084-4

Dunkley, E. J., Chalmers, J. D., Cho, S., Finn, T. J., & Patrick, W. M. (2019). Assessment of Phenotype Microarray plates for rapid and high-throughput analysis of collateral sensitivity networks. PLoS ONE, 14(12), e0219879. doi: 10.1371/journal.pone.0219879

Fitzgerald, R. P., Legge, M., Rewi, P., & Robinson, E. J. (2019). Excluding indigenous bioethical concerns when regulating frozen embryo storage: An Aotearoa New Zealand case study. Reproductive Biomedicine & Society Online, 8, 10-22. doi: 10.1016/j.rbms.2019.01.001

Forester, N. T., Lane, G. A., McKenzie, C. M., Lamont, I. L., & Johnson, L. J. (2019). The role of SreA-mediated iron regulation in maintaining Epichloë festucae-Lolium perenne symbioses. Molecular Plant-Microbe Interactions, 32(10), 1324-1335. doi: 10.1094/mpmi-03-19-0060-r

Forsman, J. A., Vass, I., & Eaton-Rye, J. J. (2019). D1:Glu244 and D1:Tyr246 of the bicarbonate-binding environment of Photosystem II moderate high light susceptibility and electron transfer through the quinone-Fe-acceptor complex. Biochimica et Biophysica Acta: Bioenergetics, 1860, 148054. doi: 10.1016/j.bbabio.2019.07.009

Forsman, J. A., Winter, R. T., & Eaton-Rye, J. J. (2019). An improved system for the targeted mutagenesis of the psbA2 gene in Synechocystis sp. PCC 6803: Mutation of D1-Glu244 to His impairs electron transfer between Q_A and Q_B of Photosystem II. New Zealand Journal of Botany, 59(2), 125-136. doi: 10.1080/0028825X.2019.1617321

Gardner, P. P., Watson, R. J., Morgan, X. C., Draper, J. L., Finn, R. D., Morales, S. E., & Stott, M. B. (2019). Identifying accurate metagenome and amplicon software via a meta-analysis of sequence to taxonomy benchmarking studies. PeerJ, 7, e6160 . doi: 10.7717/peerj.6160

Godwin, T. D., Kelly, S. T., Brew, T. P., Bougen-Zhukov, N. M., Single, A. B., Chen, A., Stylianou, C. E., … Currie, S. K., Telford, B. J., Beetham, H. G., … Black, M. A., & Guilford, P. J. (2019). E-cadherin-deficient cells have synthetic lethal vulnerabilities in plasma membrane organisation, dynamics and function. Gastric Cancer, 22(2), 273-286. doi: 10.1007/s10120-018-0859-1

Hakkaart, C., Ellison-Loschmann, L., Day, R., Sporle, A., Koea, J., Harawira, P., … Guilford, P. (2019). Germline CDH1 mutations are a significant contributor to the high frequency of early-onset diffuse gastric cancer cases in New Zealand Māori. Familial Cancer, 18(1), 83-90. doi: 10.1007/s10689-018-0080-8

Harrop, T. W. R., Mantegazza, O., Luong, A. M., Béthune, K., Lorieux, M., Jouannic, S., & Adam, H. (2019). A set of AP2-like genes is associated with inflorescence branching and architecture in domesticated rice. Journal of Experimental Botany, 70(20), 5617-5629. doi: 10.1093/jxb/erz340

Herbison, R., Evans, S., Doherty, J.-F., Algie, M., Kleffmann, T., & Poulin, R. (2019). A molecular war: Convergent and ontogenetic evidence for adaptive host manipulation in related parasites infecting divergent hosts. Proceedings of the Royal Society B, 286(1915), 20191827. doi: 10.1098/rspb.2019.1827

Hou, Y., Vasileva, E. A., Mishchenko, N. P., Carne, A., McConnell, M., & Bekhit, A. E.-D. A. (2019). Extraction, structural characterization and stability of polyhydroxylated naphthoquinones from shell and spine of New Zealand sea urchin (Evechinus chloroticus). Food Chemistry, 272, 379-387. doi: 10.1016/j.foodchem.2018.08.046

Huang, W., Feng, Z., Aila, R., Hou, Y., Carne, A., & Bekhit, A. E.-D. A. (2019). Effect of pulsed electric fields (PEF) on physico-chemical properties, β-carotene and antioxidant activity of air-dried apricots. Food Chemistry, 291, 253-262. doi: 10.1016/j.foodchem.2019.04.021

Hudson, M., Mead, A. T. P., Chagné, D., Roskruge, N., Morrison, S., Wilcox, P. L., & Allan, A. C. (2019). Indigenous perspectives and gene editing in Aotearoa New Zealand. Frontiers in Bioengineering & Biotechnology, 7, 70. doi: 10.3389/fbioe.2019.00070

Jones, L. M., & Legge, M. (2019). Fasting plasma fatty acids and glycerol in spinal cord injured males. New Zealand Journal of Medical Laboratory Science, 73(2), 46-48.

Jones, L. M., & Legge, M. (2019). Plasma fatty acids as markers for desaturase and elongase activities in spinal cord injured males. Journal of Spinal Cord Medicine, 42(2), 163-170. doi: 10.1080/10790268.2017.1405154

Jordan, D. M., Choi, H. K., Verbanck, M., Topless, R., Won, H.-H., Nadkarni, G., Merriman, T. R., & Do, R. (2019). No causal effects of serum urate levels on the risk of chronic kidney disease: A Mendelian randomization study. PLoS Medicine, 16(1), e1002725. doi: 10.1371/journal.pmed.1002725

Kawamura, Y., Nakaoka, H., Nakayama, A., Okada, Y., Yamamoto, K., Higashino, T., … Merriman, T. R., … Matsuo, H. (2019). Genome-wide association study revealed novel loci which aggravate asymptomatic hyperuricaemia into gout. Annals of the Rheumatic Diseases, 78, 1430-1437. doi: 10.1136/annrheumdis-2019-215521

Lamichhane, R., Schneider, M., de la Harpe, S. M., Harrop, T. W. R., Hannaway, R. F., Dearden, P. K., Kirman, J. R., Tyndall, J. D. A., Vernall, A. J., & Ussher, J. E. (2019). TCR- or cytokine-activated CD8⁺ mucosal-associated invariant T cells are rapid polyfunctional effectors that can coordinate immune responses. Cell Reports, 28(12), 3061-3076.e5. doi: 10.1016/j.celrep.2019.08.054

Leask, M., Dowdle, A., Salvesen, H., Topless, R., Fadason, T., Wei, W., … Marsman, J., Antony, J., … Merriman, T. R., & Horsfield, J. A. (2019). Functional urate-associated genetic variants influence expression of lincRNAs LINC01229 and MAFTRR. Frontiers in Genetics, 9, 733. doi: 10.3389/fgene.2018.00733

Lees, N. R., Han, L.-C., Byrne, M. J., Davies, J. A., Parnell, A. E., Moreland, P. E. J., … Race, P. R. (2019). An esterase-like lyase catalyzes acetate elimination in spirotetronate/spirotetramate biosynthesis. Angewandte Chemie International Edition, 58(8), 2305-2309. doi: 10.1002/anie.201812105

Liu, Y.-F., Oey, I., Bremer, P., Silcock, P., Carne, A., & McConnell, M. (2019). Pulsed electric fields treatment at different pH enhances the antioxidant and anti-inflammatory activity of ovomucin-depleted egg white. Food Chemistry, 276, 164-173. doi: 10.1016/j.foodchem.2018.10.009

Livingstone, R. W., Elder, M. K., Barrett, M. C., Westlake, C. M., Peppercorn, K., Tate, W. P., Abraham, W. C., & Williams, J. M. (2019). Secreted amyloid precursor protein-alpha promotes arc protein synthesis in hippocampal neurons. Frontiers in Molecular Neuroscience, 12, 198. doi: 10.3389/fnmol.2019.00198

Lovegrove, M. R., Dearden, P. K., & Duncan, E. J. (2019). Ancestral hymenopteran queen pheromones do not share the broad phylogenetic repressive effects of honeybee queen mandibular pheromone. Journal of Insect Physiology, 119, 103968. doi: 10.1016/j.jinsphys.2019.103968

Lu, J., Dalbeth, N., Yin, H., Li, C., Merriman, T. R., & Wei, W.-H. (2019). Mouse models for human hyperuricaemia: A critical review. Nature Reviews Rheumatology, 15, 413-426. doi: 10.1038/s41584-019-0222-x

Lu, J., Sun, M., Wu, X., Yuan, X., Liu, Z., Qu, X., … Merriman, T. R., & Li, C. (2019). Urate-lowering therapy alleviates atherosclerosis inflammatory response factors and neointimal lesions in a mouse model of induced carotid atherosclerosis. FEBS Journal, 286, 1346-1359. doi: 10.1111/febs.14768

McCallum, J., Laing, W., Bulley, S., Thomson, S., Catanach, A., Shaw, M., … Chisnall, M., Lee, R., Macknight, R., & Seal, A. (2019). Molecular characterisation of a supergene conditioning super-high vitamin C in kiwifruit hybrids. Plants, 8(7), 237. doi: 10.3390/plants8070237

McCormick, S. P. A., & Schneider, W. J. (2019). Lipoprotein(a) catabolism: A case of multiple receptors. Pathology, 51(2), 155-164. doi: 10.1016/j.pathol.2018.11.003

McCulloch, G. A., Foster, B. J., Dutoit, L., Ingram, T., Hay, E., Veale, A. J., Dearden, P. K., & Waters, J. M. (2019). Ecological gradients drive insect wing loss and speciation: The role of the alpine treeline. Molecular Ecology, 28, 3141-3150. doi: 10.1111/mec.15114

McCulloch, G. A., Oliphant, A., Dearden, P. K., Veale, A. J., Ellen, C. W., & Waters, J. M. (2019). Comparative transcriptomic analysis of a wing-dimorphic stonefly reveals candidate wing loss genes. EvoDevo, 10, 21. doi: 10.1186/s13227-019-0135-4

Mockett, B. G., Guévremont, D., Elder, M. K., Parfitt, K. D., Peppercorn, K., Morrissey, J., Singh, A., Hintz, T. J., … Tate, W. P., Williams, J. M., & Abraham, W. C. (2019). Glutamate receptor trafficking and protein synthesis mediate the facilitation of LTP by secreted amyloid precursor protein-alpha. Journal of Neuroscience, 39(17), 3188-3203. doi: 10.1523/jneurosci.1826-18.2019

Morris, J. N., Kovács, S., Vass, I., Summerfield, T. C., & Eaton-Rye, J. J. (2019). Environmental pH and Glu364 to Gln mutation in the chlorophyll-binding CP47 protein affect redox-active TyrD and charge recombination in Photosystem II. FEBS Letters, 593, 163-174. doi: 10.1002/1873-3468.13307

Morrissey, J. A., Bigus, E., Necarsulmer, J. C., Srinivasan, V., Peppercorn, K., O'Leary, D. J., Mockett, B. G., Tate, W. P., Hughes, S. M., … Abraham, W. C. (2019). The tripeptide RER mimics secreted amyloid precursor protein-alpha in upregulating LTP. Frontiers in Cellular Neuroscience, 13, 459. doi: 10.3389/fncel.2019.00459

Morrissey, J. A., Mockett, B. G., Singh, A., Kweon, D., Ohline, S. M., Tate, W. P., Hughes, S. M., & Abraham, W. C. (2019). A C-terminal peptide from secreted amyloid precursor protein-α enhances long-term potentiation in rats and a transgenic mouse model of Alzheimer's disease. Neuropharmacology, 157, 107670. doi: 10.1016/j.neuropharm.2019.107670

Murota, C., Fujiwara, S., Tsujishita, M., Urabe, K., Takayanagi, S., Aoki, M., … Eaton-Rye, J. J., … Tsuzuki, M. (2019). Hyper-resistance to arsenate in the cyanobacterium Synechocystis sp. PCC 6803 is influenced by the differential kinetics of its pst-ABC transporters and external phosphate concentration exposure. Algal Research, 38, 101410. doi: 10.1016/j.algal.2019.101410

Murphy, R., Gamble, G. D., House, M., Pool, B., Horne, A., Merriman, T. R., & Dalbeth, N. (2019). Greater insulin response to acute fructose ingestion among Māori and Pacific people compared to European people living in Aotearoa New Zealand. Internal Medicine Journal, 49, 196-202. doi: 10.1111/imj.14135

Murugayah, S., & Gerth, M. L. (2019). Engineering quorum quenching enzymes: progress and perspectives. Biochemical Society Transactions, 47, 793-800. doi: 10.1042/bst20180165

Mutreja, I., Warring, S. L., Lim, K. S., Swadi, T., Clinch, K., Mason, J. M., … Chambers, S. T., … Gerth, M. L., … Woodfield, T. B. F. (2019). Biofilm inhibition via delivery of novel methylthioadenosine nucleosidase inhibitors from PVA-tyramine hydrogels while supporting mesenchymal stromal cell viability. ACS Biomaterials Science & Engineering, 5(2), 748-758. doi: 10.1021/acsbiomaterials.8b01141

Nicholson, T. J., Jackson, S. A., Croft, B. I., Staals, R. H. J., Fineran, P. C., & Brown, C. M. (2019). Bioinformatic evidence of widespread priming in type I and II CRISPR-Cas systems. RNA Biology, 16(4), 566-576. doi: 10.1080/15476286.2018.1509662

Nilsen, A. R., Brown, C. M., Summerfield, T. C., & Orlovich, D. A. (2019). Cortinarius atropileatus sp. nov. (Cortinariaceae) from New Zealand. New Zealand Journal of Botany, 57(1), 50-61. doi: 10.1080/0028825X.2018.1548493

Nogueira-López, G., Padilla-Arizmendi, F., Inwood, S., Lyne, S., Steyaert, J. M., Nieto-Jacobo, M. F., … Mendoza-Mendoza, A. (2019). TrichoGate: An improved vector system for a large scale of functional analysis of Trichoderma genes. Frontiers in Microbiology, 10, 2794. doi: 10.3389/fmicb.2019.02794

Norero, E., Alarcon, M. A., Hakkaart, C., de Mayo, T., Mellado, T., Garrido, M., … Guilford, P., & Corvalan, A. H. (2019). Identification of c.1531C>T pathogenic variant in the CDH1 gene as a novel germline mutation of hereditary diffuse gastric cancer. International Journal of Molecular Sciences, 20, 4980. doi: 10.3390/ijms20204980

Norton, S. E., Ward-Hartstonge, K. A., McCall, J. L., Leman, J. K. H., Taylor, E. S., Munro, F., Black, M. A., … Kemp, R. A. (2019). High-dimensional mass cytometric analysis reveals an increase in effector regulatory T cells as a distinguishing feature of colorectal tumors. Journal of Immunology, 202, 1871-1884. doi: 10.4049/jimmunol.1801368

Opel-Reading, H. K., Mortuza, R., & Krause, K. L. (2019). Detection of D-glutamate production from the dual function enzyme, 4-amino-4-deoxychorismate lyase/D-amino acid transaminase, in Mycobacterium smegmatis. Bio-protocol, 9(1), e3135. doi: 10.21769/BioProtoc.3135

Ortega-Recalde, O., Day, R. C., Gemmell, N. J., & Hore, T. A. (2019). Zebrafish preserve global germline DNA methylation while sex-linked rDNA is amplified and demethylated during feminisation. Nature Communications, 10, 3053. doi: 10.1038/s41467-019-10894-7

Panfilio, K. A., Vargas Jentzsch, I. M., Benoit, J. B., Erezyilmaz, D., Suzuki, Y., Colella, S., … Duncan, E. J., … Cridge, A. G., … Dearden, P. K., … Leask, M., … Lovegrove, M. R., … Tidswell, O., … Richards, S. (2019). Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome. Genome Biology, 20, 64. doi: 10.1186/s13059-019-1660-0

Parackal, S., Zou, D., Day, R., Black, M., & Guilford, P. (2019). Comparison of Roche Cell-Free DNA collection Tubes^® to Streck Cell-Free DNA BCT^®s for sample stability using healthy volunteers. Practical Laboratory Medicine, 16, e00125. doi: 10.1016/j.plabm.2019.e00125

Patil, K. S., Basak, I., Dalen, I., Hoedt, E., Lange, J., Lunde, K. A., … Møller, S. G. (2019). Combinatory microRNA serum signatures as classifiers of Parkinson's disease. Parkinsonism & Related Disorders, 64, 202-210. doi: 10.1016/j.parkreldis.2019.04.010

Reinbothe, S., Bartsch, S., Rossig, C., Davis, M. Y., Yuan, S., Reinbothe, C., & Gray, J. (2019). A protochlorophyllide (Pchlide) a oxygenase for plant viability. Frontiers in Plant Science, 10, 593. doi: 10.3389/fpls.2019.00593

Rushton-Green, R., Darnell, R. L., Taiaroa, G., Carter, G. P., Cook, G. M., & Morgan, X. C. (2019). Agricultural origins of a highly persistent lineage of vancomycin-resistant Enterococcus faecalis in New Zealand. Applied & Environmental Microbiology, 85(13), e00137-19. doi: 10.1128/aem.00137-19

Sackton, T. B., Grayson, P., Cloutier, A., Hu, Z., Liu, J. S., Wheeler, N. E., Gardner, P. P., … Edwards, S. V. (2019). Convergent regulatory evolution and loss of flight in paleognathous birds. Science, 364(6435), 74-78. doi: 10.1126/science.aat7244

Samarth, Lee, R., Song, J., Macknight, R. C., & Jameson, P. E. (2019). Identification of flowering-time genes in mast flowering plants using De Novo transcriptomic analysis. PLoS ONE, 14(8), e0216267. doi: 10.1371/journal.pone.0216267

Schoderboeck, L., Wicky, H. E., Abraham, W. C., & Hughes, S. M. (2019). Genetic targeting and chemogenetic inhibition of newborn neurons. Human Gene Therapy Methods, 29(6), 259-268. doi: 10.1089/hgtb.2018.182

Schwartz, U., Németh, A., Diermeier, S., Exler, J. H., Hansch, S., Maldonado, R., … Längst, G. (2019). Characterizing the nuclease accessibility of DNA in human cells to map higher order structures of chromatin. Nucleic Acids Research, 47(3), 1239-1254. doi: 10.1093/nar/gky1203

Shehreen, S., Chyou, T.-y., Fineran, P. C., & Brown, C. M. (2019). Genome-wide correlation analysis suggests different roles of CRISPR-Cas systems in the acquisition of antibiotic resistance genes in diverse species. Philosophical Transactions of the Royal Society B, 374(1772), 20180384. doi: 10.1098/rstb.2018.0384

Shrestha, N., Nimick, M., Dass, P., Rosengren, R. J., & Ashton, J. C. (2019). Mechanisms of suppression of cell growth by dual inhibition of ALK and MEK in ALK-positive non-small cell lung cancer. Scientific Reports, 9, 18842. doi: 10.1038/s41598-019-55376-4

Skelly, J., Pushparajan, C., Duncan, E. J., & Dearden, P. K. (2019). Evolution of the Torso activation cassette, a pathway required for terminal patterning and moulting. Insect Molecular Biology, 28(3), 392-408. doi: 10.1111/imb.12560

Soni, A., Oey, I., Silcock, P., Permina, E., & Bremer, P. J. (2019). Differential gene expression for investigation of the effect of germinants and heat activation to induce germination in Bacillus cereus spores. Food Research International, 119, 462-468. doi: 10.1016/j.foodres.2018.12.041

Soni, A., Oey, I., Silcock, P., Permina, E., & Bremer, P. J. (2019). Effect of cold storage and different ions on the thermal resistance of B. cereus NZAS01 spores: Analysis of differential gene expression and ion exchange. Food Research International, 116, 578-585. doi: 10.1016/j.foodres.2018.08.076

Stockwell, R. E., Chin, M., Johnson, G. R., Wood, M. E., Sherrard, L. J., Ballard, E., … Ramsay, K. A., … Bell, S. C. (2019). Transmission of bacteria in bronchiectasis and chronic obstructive pulmonary disease: Low burden of cough aerosols. Respirology, 24, 980-987. doi: 10.1111/resp.13544

Sweetman, E., Ryan, M., Edgar, C., MacKay, A., Vallings, R., & Tate, W. (2019). Changes in the transcriptome of circulating immune cells of a New Zealand cohort with myalgic encephalomyelitis/chronic fatigue syndrome. International Journal of Immunopathology & Pharmacology, 33, 1-8. doi: 10.1177/2058738418820402

Taylor, S. E., Tuffery, J., Bakopoulos, D., Lequeux, S., Warr, C. G., Johnson, T. K., & Dearden, P. K. (2019). The torso-like gene functions to maintain the structure of the vitelline membrane in Nasonia vitripennis, implying its co-option into Drosophila axis formation. Biology Open, 8(9), bio046284. doi: 10.1242/bio.046284

Thomson, J. M., & Lamont, I. L. (2019). Nucleoside analogues as antibacterial agents. Frontiers in Microbiology, 10. doi: 10.3389/fmicb.2019.00952

Todd, E. V., Ortega-Recalde, O., Liu, H., Lamm, M. S., Rutherford, K. M., Cross, H., Black, M. A., Kardailsky, O., … Hore, T. A., … Gemmell, N. J. (2019). Stress, novel sex genes, and epigenetic reprogramming orchestrate socially controlled sex change. Science Advances, 5(7), eaaw7006. doi: 10.1126/sciadv.aaw7006

Vangala, G., Imhoff, F. M., Squires, C. M. L., Cridge, A. G., & Baird, S. K. (2019). Mesenchymal stem cell homing towards cancer cells is increased by enzyme activity of cathepsin D. Experimental Cell Research, 383, 111494. doi: 10.1016/j.yexcr.2019.07.007

Vazirpanah, N., Ottria, A., van der Linden, M., Wichers, C. G. K., Schuiveling, M., van Lochem, E., Phipps-Green, A., Merriman, T., … Broen, J. C. A. (2019). mTOR inhibition by metformin impacts monosodium urate crystal-induced inflammation and cell death in gout: A prelude to a new add-on therapy? Annals of the Rheumatic Diseases, 78, 663-671. doi: 10.1136/annrheumdis-2018-214656

Wardell, S. J. T., Rehman, A., Martin, L. W., Winstanley, C., Patrick, W. M., & Lamont, I. L. (2019). A large-scale whole-genome comparison shows that experimental evolution in response to antibiotics predicts changes in naturally evolved clinical Pseudomonas aeruginosa. Antimicrobial Agents & Chemotherapy, 63(12), e01619-19. doi: 10.1128/aac.01619-19

Watson, B. N. J., Vercoe, R. B., Salmond, G. P. C., Westra, E. R., Staals, R. H. J., & Fineran, P. C. (2019). Type I–F CRISPR-Cas resistance against virulent phages results in abortive infection and provides population-level immunity. Nature Communications, 10, 5526. doi: 10.1038/s41467-019-13445-2

West, J. D., Tang, P.-C., Everett, C. A., MacKay, G. E., Flockhart, J. H., & Keighren, M. A. (2019). Re-evaluation of the causes of variation among mouse aggregation chimaeras. Biology Open, 8(5), bio042804. doi: 10.1242/bio.042804

Wheeler, N. E., Blackmore, T., Reynolds, A. D., Midwinter, A. C., Marshall, J., French, N. P., … Gardner, P. P., & Biggs, P. J. (2019). Genomic correlates of extraintestinal infection are linked with changes in cell morphology in Campylobacter jejuni. Microbial Genomics, 5(2), 1-12. doi: 10.1099/mgen.0.000251

Wu, R., Wang, T., Richardson, A. C., Allan, A. C., Macknight, R. C., & Varkonyi-Gasic, E. (2019). Histone modification and activation by SOC1-like and drought stress-related transcription factors may regulate AcSVP2 expression during kiwifruit winter dormancy. Plant Science, 281, 242-250. doi: 10.1016/j.plantsci.2018.12.001

Zawierucha, K., Marshall, C. J., Wharton, D., & Janko, K. (2019). A nematode in the mist: Scottnema lindsayae is the only soil metazoan in remote Antarctic deserts, at greater densities with altitude. Polar Research, 38, 1-12. doi: 10.33265/polar.v38.3494

Aiderus, A., Black, M. A., & Dunbier, A. K. (2018). Fatty acid oxidation is associated with proliferation and prognosis in breast and other cancers. BMC Cancer, 18, 805. doi: 10.1186/s12885-018-4626-9

Alexander, J. L., Oliphant, A., Wilcockson, D. C., Audsley, N., Down, R. E., Lafont, R., & Webster, S. G. (2018). Functional characterization and signaling systems of corazonin and red pigment concentrating hormone in the green shore crab, Carcinus maenas. Frontiers in Neuroscience, 11, 752. doi: 10.3389/fnins.2017.00752

Alexander, J., Oliphant, A., Wilcockson, D. C., & Webster, S. G. (2018). Functional identification and characterization of the diuretic hormone 31 (DH31) signaling system in the green shore crab, Carcinus maenas. Frontiers in Neuroscience, 12, 454. doi: 10.3389/fnins.2018.00454

Armisén, D., Rajakumar, R., Friedrich, M., Benoit, J. B., Robertson, H. M., Panfilio, K. A., … Cridge, A. G., … Khila, A. (2018). The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water. BMC Genomics, 19, 832. doi: 10.1186/s12864-018-5163-2

Arun, G., Diermeier, S. D., & Spector, D. L. (2018). Therapeutic targeting of long non-coding RNAs in cancer. Trends in Molecular Medicine, 24(3), 257-277. doi: 10.1016/j.molmed.2018.01.001

Ayana, M., Vlaminck, J., Cools, P., Ame, S., Albonico, M., Dana, D., … Sowerby, S., … Levecke, B. (2018). Modification and optimization of the FECPAK^G2 protocol for the detection and quantification of soil-transmitted helminth eggs in human stool. PLoS Neglected Tropical Diseases, 12(10), e0006655. doi: 10.1371/journal.pntd.0006655

Bilton, T. P., Schofield, M. R., Black, M. A., Chagné, D., Wilcox, P. L., & Dodds, K. G. (2018). Accounting for errors in low coverage high-throughput sequencing data when constructing genetic maps using biparental outcrossed populations. Genetics, 209(1), 65-76. doi: 10.1534/genetics.117.300627

Biswas, S., & Eaton-Rye, J. J. (2018). PsbY is required for prevention of photodamage to photosystem II in a PsbM-lacking mutant of Synechocystis sp. PCC 6803. Photosynthetica, 56(1), 200-209. doi: 10.1007/s11099-018-0788-6

Bräuning, S., Catanach, A., Lord, J. M., Bicknell, R., & Macknight, R. C. (2018). Comparative transcriptome analysis of the wild-type model apomict Hieracium praealtum and its loss of parthenogenesis (lop) mutant. BMC Plant Biology, 18, 206. doi: 10.1186/s12870-018-1423-1

Brewster, J., Garama, D., Lamare, M., & Carne, A. (2018). Carotenoid composition of a New Zealand (Evechinus chloroticus) and an Australian (Heliocidaris erythrogramma) sea urchin in relation to gonad colour. Aquaculture Research, 49(8), 2751-2762. doi: 10.1111/are.13736

Brown, A., Thatje, S., Oliphant, A., Munro, C., & Smith, K. E. (2018). Temperature adaptation in larval development of lithodine crabs from deep-water lineages. Journal of Sea Research, 142, 167-173. doi: 10.1016/j.seares.2018.09.017

Brown, A., Thatje, S., Oliphant, A., Munro, C., & Smith, K. E. (2018). Temperature effects on larval development in the lithodid crab Lithodes maja. Journal of Sea Research, 139, 73-84. doi: 10.1016/j.seares.2018.06.009

Budhidarmo, R., Zhu, J., Middleton, A. J., & Day, C. L. (2018). The RING domain of RING Finger 11 (RNF11) protein binds Ubc13 and inhibits formation of polyubiquitin chains. FEBS Letters, 592(8), 1434-1444. doi: 10.1002/1873-3468.13029

Burrow, K., Young, W., McConnell, M., Carne, A., & Bekhit, A. E.-D. (2018). Do dairy minerals have a positive effect on bone health? Comprehensive Reviews in Food Science & Food Safety, 17(4), 989-1005. doi: 10.1111/1541-4337.12364

Burrow, K., Young, W., McConnell, M., Carne, A., Barr, D., Reid, M., & Bekhit, A. E.-D. (2018). The distribution of essential, trace, and nonessential minerals in weanling male rats fed sheep or cow milk. Molecular Nutrition & Food Research, 62, 1800482. doi: 10.1002/mnfr.201800482

Campbell, H., Fleming, N., Roth, I., Mehta, S., Wiles, A., Williams, G., … Munro, F., McNoe, L., Black, M., McCall, J., Slatter, T. L., … Braithwaite, A. W. (2018). Δ133p53 isoform promotes tumour invasion and metastasis via interleukin-6 activation of JAK-STAT and RhoA-ROCK signalling. Nature Communications, 9(1), 254. doi: 10.1038/s41467-017-02408-0

Chen, S., Nimick, M., Cridge, A. G., Hawkins, B. C., & Rosengren, R. J. (2018). Anticancer potential of novel curcumin analogs towards castrate-resistant prostate cancer. International Journal of Oncology, 52(2), 579-588. doi: 10.3892/ijo.2017.4207

Clare, A. J., Day, R. C., Empson, R. M., & Hughes, S. M. (2018). Transcriptome profiling of layer 5 intratelencephalic projection neurons from the mature mouse motor cortex. Frontiers in Molecular Neuroscience, 11, 410. doi: 10.3389/fnmol.2018.00410

Clifton, B. E., Kaczmarski, J. A., Carr, P. D., Gerth, M. L., Tokuriki, N., & Jackson, C. J. (2018). Evolution of cyclohexadienyl dehydratase from an ancestral solute-binding protein. Nature Chemical Biology, 14(6), 542-547. doi: 10.1038/s41589-018-0043-2

Conner, T. S., McFarlane, K. G., Choukri, M., Riordan, B. C., Flett, J. A. M., Phipps-Green, A. J., Topless, R. K., Merriman, M. E., & Merriman, T. R. (2018). The oxytocin receptor gene (OXTR) variant rs53576 is not related to emotional traits or states in young adults [Brief research report]. Frontiers in Psychology, 9, 2548. doi: 10.3389/fpsyg.2018.02548

Craig, H. J. B., Stachowicz, K., Black, M., Parry, M., Burke, C. R., Meier, S., & Amer, P. R. (2018). Genotype by environment interactions in fertility traits in New Zealand dairy cows. Journal of Dairy Science, 101, 10991-11003. doi: 10.3168/jds.2017-14195

Cridge, A. G., Crowe-McAuliffe, C., Mathew, S. F., & Tate, W. P. (2018). Eukaryotic translational termination efficiency is influenced by the 3' nucleotides within the ribosomal mRNA channel. Nucleic Acids Research, gkx1315. doi: 10.1093/nar/gkx1315

Deo, N., El-Hoss, J., Kolind, M., Mikulec, K., Peacock, L., Little, D. G., & Schindeler, A. (2018). JNK inhibitor CC-930 reduces fibrosis in a murine model of Nf1-deficient fracture repair. Journal of Applied Biomedicine, 16(4), 350-357. doi: 10.1016/j.jab.2018.01.006

Fanning, N., Merriman, T. R., Dalbeth, N., & Stamp, L. K. (2018). An association of smoking with serum urate and gout: A health paradox. Seminars in Arthritis & Rheumatism, 47(6), 825-842. doi: 10.1016/j.semarthrit.2017.11.004

Fatima, T., McKinney, C., Major, T. J., Stamp, L. K., Dalbeth, N., Iverson, C., Merriman, T. R., & Miner, J. N. (2018). The relationship between ferritin and urate levels and risk of gout. Arthritis Research & Therapy, 20, 179. doi: 10.1186/s13075-018-1668-y

Fellner, M., Hausinger, R. P., & Hu, J. (2018). A structural perspective on the PP-loop ATP pyrophosphatase family. Critical Reviews in Biochemistry & Molecular Biology, 53(6), 607-622. doi: 10.1080/10409238.2018.1516728

Fellner, M., Rankin, J. A., Desguin, B., Hu, J., & Hausinger, R. P. (2018). Analysis of the active site cysteine residue of the sacrificial sulfur insertase LarE from Lactobacillus plantarum. Biochemistry, 57(38), 5513-5523. doi: 10.1021/acs.biochem.8b00601

Fitzgerald, R. P., Wardell, S., & Legge, M. (2018). Fetal genetic difference and a cosmopolitan vernacular of the right to choose. Women's Studies International Forum, 67, 110-117. doi: 10.1016/j.wsif.2017.04.001

Foglizzo, M., Middleton, A. J., Burgess, A. E., Crowther, J. M., Dobson, R. C. J., Murphy, J. M., Day, C. L., & Mace, P. D. (2018). A bidentate Polycomb Repressive-Deubiquitinase complex is required for efficient activity on nucleosomes. Nature Communications, 9, 3932. doi: 10.1038/s41467-018-06186-1

Forester, N. T., Lane, G. A., Steringa, M., Lamont, I. L., & Johnson, L. J. (2018). Contrasting roles of fungal siderophores in maintaining iron homeostasis in Epichloë festucae. Fungal Genetics & Biology, 111, 60-72. doi: 10.1016/j.fgb.2017.11.003

Fudge, J. B., Lee, R. H., Laurie, R. E., Mysore, K. S., Wen, J., Weller, J. L., & Macknight, R. C. (2018). Medicago truncatula SOC1 genes are up-regulated by environmental cues that promote flowering. Frontiers in Plant Science, 9, 496. doi: 10.3389/fpls.2018.00496

González-Miró, M., Rodríguez-Noda, L. M., Fariñas-Medina, M., Cedré-Marrero, B., Madariaga-Zarza, S., Zayas-Vignier, C., … Kleffmann, T., … Rehm, B. H. A. (2018). Bioengineered polyester beads co-displaying protein and carbohydrate-based antigens induce protective immunity against bacterial infection. Scientific Reports, 8, 1888. doi: 10.1038/s41598-018-20205-7

Goodman, L., Cree, L., Jones, G., Legge, M., Shelling, A., & Farquhar, C. (2018). The futility of fertility research? Barriers to embryo research in New Zealand. New Zealand Medical Journal, 131(1477), 63-70. Retrieved from https://www.nzma.org.nz/journal

Gosling, A. L., Boocock, J., Dalbeth, N., Harré Hindmarsh, J., Stamp, L. K., Stahl, E. A., … Matisoo-Smith, E. A., & Merriman, T. R. (2018). Mitochondrial genetic variation and gout in Māori and Pacific people living in Aotearoa New Zealand. Annals of the Rheumatic Diseases, 77(4), 571-578. doi: 10.1136/annrheumdis-2017-212416

Greig, K., Gosling, A., Collins, C. J., Boocock, J., McDonald, K., Addison, D. J., … Higham, C. F. W., … Walter, R., & Matisoo-Smith, E. (2018). Complex history of dog (Canis familiaris) origins and translocations in the Pacific revealed by ancient mitogenomes. Scientific Reports, 8, 9130. doi: 10.1038/s41598-018-27363-8

Groves, M. R., Schroer, C. F. E., Middleton, A. J., Lunev, S., Danda, N., Ali, A. M., … Williams, C. (2018). Structural insights into K48-linked ubiquitin chain formation by the Pex4p-Pex22p complex. Biochemical & Biophysical Research Communications, 496(2), 562-567. doi: 10.1016/j.bbrc.2017.12.150

Harrop, T. W. R., Denecke, S., Yang, Y. T., Chan, J., Daborn, P. J., Perry, T., & Batterham, P. (2018). Evidence for activation of nitenpyram by a mitochondrial cytochrome P450 in Drosophila melanogaster. Pest Management Science, 74(7), 1616-1622. doi: 10.1002/ps.4852

Hou, Y., Vasileva, E. A., Carne, A., McConnell, M., Bekhit, A. E.-D. A., & Mishchenko, N. P. (2018). Naphthoquinones of the spinochrome class: Occurrence, isolation, biosynthesis and biomedical applications [Review]. RSC Advances, 8(57), 32637-32650. doi: 10.1039/c8ra04777d

Jamieson, S. A., Ruan, Z., Burgess, A. E., Curry, J. R., McMillan, H. D., Brewster, J. L., Dunbier, A. K., … Mace, P. D. (2018). Substrate binding allosterically relieves autoinhibition of the pseudokinase TRIB1. Science Signaling, 11(549), eaau0597. doi: 10.1126/scisignal.aau0597

Ketharnathan, S., Leask, M., Boocock, J., Phipps-Green, A. J., Antony, J., O'Sullivan, J. M., Merriman, T. R., & Horsfield, J. A. (2018). A non-coding genetic variant maximally associated with serum urate levels is functionally linked to HNF4A-dependent PDZK1 expression. Human Molecular Genetics, 27(22), 3964-3973. doi: 10.1093/hmg/ddy295

Khan, A. A., Randhawa, M. A., Carne, A., Ahmed, I. A. M., Al-Juhaimi, F. Y., Barr, D., Reid, M., & Bekhit, A. E.-D. A. (2018). Effect of low and high pulsed electric field processing on macro and micro minerals in beef and chicken. Innovative Food Science & Emerging Technologies, 45, 273-279. doi: 10.1016/j.ifset.2017.11.012

Khan, A. A., Randhawa, M. A., Carne, A., Mohamed Ahmed, I. A., Barr, D., Reid, M., & Bekhit, A. E.-D. A. (2018). Quality and nutritional minerals in chicken breast muscle treated with low and high pulsed electric fields. Food & Bioprocess Technology, 11(1), 122-131. doi: 10.1007/s11947-017-1997-x

Khosa, J., Lee, R., Joshi, S., Shaw, M., McCallum, J., & Macknight, R. (2018). A guide for the cultivation of onion under controlled environment conditions. HortScience, 53(12), 1746-1749. doi: 10.21273/HORTSCI13515-18

Krishnan, M., Major, T. J., Topless, R. K., Dewes, O., Yu, L., Thompson, J. M. D., … Stamp, L. K., … Wilcox, P., Grattan, D., … Merriman, T. R. (2018). Discordant association of the CREBRF rs373863828 A allele with increased BMI and protection from type 2 diabetes in Māori and Pacific (Polynesian) people living in Aotearoa/New Zealand. Diabetologia, 61(7), 1603-1613. doi: 10.1007/s00125-018-4623-1

Lacey, C. J., Doudney, K., Bridgman, P. G., George, P. M., Mulder, R. T., Zarifeh, J. J., Kimber, B., Cadzow, M. J., Black, M. A., Merriman, T. R., … Pearson, J. F., Cameron, V. A., & Kennedy, M. A. (2018). Copy number variants implicate cardiac function and development pathways in earthquake-induced stress cardiomyopathy. Scientific Reports, 8, 7548. doi: 10.1038/s41598-018-25827-5

Lawrence, B., Blenkiron, C., Parker, K., Tsai, P., Fitzgerald, S., Shields, P., … Black, M., … Robinson, B., … Carroll, R., … Morrin, H., … Jackson, C., … Print, C. (2018). Recurrent loss of heterozygosity correlates with clinical outcome in pancreatic neuroendocrine cancer. npj Genomic Medicine, 3, 18. doi: 10.1038/s41525-018-0058-3

Lee, S. L. J., Horsfield, J. A., Black, M. A., Rutherford, K., & Gemmell, N. J. (2018). Identification of sex differences in zebrafish (Danio rerio) brains during early sexual differentiation and masculinisation using 17α-methyltestoterone. Biology of Reproduction, 99(2), 446-460. doi: 10.1093/biolre/iox175

Lim, C. S., Wardell, S. J. T., Kleffmann, T., & Brown, C. M. (2018). The exon-intron gene structure upstream of the initiation codon predicts translation efficiency. Nucleic Acids Research, 46(9), 4575-4591. doi: 10.1093/nar/gky282

Liu, Y.-F., Oey, I., Bremer, P., Carne, A., & Silcock, P. (2018). Bioactive peptides derived from egg proteins: A review. Critical Reviews in Food Science & Nutrition, 58(15), 2508-2530. doi: 10.1080/10408398.2017.1329704

Liu, Y.-F., Oey, I., Bremer, P., Silcock, P., & Carne, A. (2018). Proteolytic pattern, protein breakdown and peptide production of ovomucin-depleted egg white processed with heat or pulsed electric fields at different pH. Food Research International, 108, 465-474. doi: 10.1016/j.foodres.2018.03.075

Mackay, A., & Tate, W. P. (2018). A compromised paraventricular nucleus within a dysfunctional hypothalamus: A novel neuroinflammatory paradigm for ME/CFS. International Journal of Immunopathology & Pharmacology, 32, 1-8. doi: 10.1177/2058738418812342

Major, T. J., Topless, R. K., Dalbeth, N., & Merriman, T. R. (2018). Evaluation of the diet wide contribution to serum urate levels: Meta-analysis of population based cohorts. BMJ, 363, k3951. doi: 10.1136/bmj.k3951

Manning, P. J., Grattan, D., Merriman, T., Manning, T., Williams, S., & Sutherland, W. (2018). Pharmaceutical interventions for weight-loss maintenance: No effect from cabergoline. International Journal of Obesity, 42, 1871-1879. doi: 10.1038/s41366-018-0165-3

Martin, L. W., Robson, C. L., Watts, A. M., Gray, A. R., Wainwright, C. E., Bell, S. C., Ramsay, K. A., … Brockway, B., & Lamont, I. L. (2018). Expression of Pseudomonas aeruginosa antibiotic resistance genes varies greatly during infections in cystic fibrosis patients. Antimicrobial Agents & Chemotherapy, 62(11), e01789-18. doi: 10.1128/AAC.01789-18

Mastropasqua, M. C., Lamont, I., Martin, L. W., Reid, D. W., D'Orazio, M., & Battistoni, A. (2018). Efficient zinc uptake is critical for the ability of Pseudomonas aeruginosa to express virulence traits and colonize the human lung. Journal of Trace Elements in Medicine & Biology, 48, 74-80. doi: 10.1016/j.jtemb.2018.03.009

Matisoo-Smith, E., & Gosling, A. L. (2018). Walking backwards into the future: The need for a holistic evolutionary approach in Pacific health research. Annals of Human Biology, 45(3), 175-187. doi: 10.1080/03014460.2018.1448889

Mitchell, N. L., Russell, K. N., Wellby, M. P., Wicky, H. E., Schoderboeck, L., Barrell, G. K., Melzer, T. R., … Hughes, S. M., & Palmer, D. N. (2018). Longitudinal in vivo monitoring of CNS demonstrates the efficacy of gene therapy in a sheep model of CLN5 Batten disease. Molecular Therapy, 26(10), 2366-2378. doi: 10.1016/j.ymthe.2018.07.015

Mortuza, R., Aung, H. L., Taiaroa, G., Opel-Reading, H. K., Kleffmann, T., Cook, G. M., & Krause, K. L. (2018). Overexpression of a newly identified d-amino acid transaminase in Mycobacterium smegmatis complements glutamate racemase deletion. Molecular Microbiology, 107(2), 198-213. doi: 10.1111/mmi.13877

Newberg, J. Y., Black, M. A., Jenkins, N. A., Copeland, N. G., Mann, K. M., & Mann, M. B. (2018). SB Driver Analysis: A Sleeping Beauty cancer driver analysis framework for identifying and prioritizing experimentally actionable oncogenes and tumor suppressors. Nucleic Acids Research, 45(16), e94. doi: 10.1093/nar/gky450

Ohline, S. M., Wake, K. L., Hawkridge, M.-V., Dinnunhan, M. F., Hegemann, R. U., Wilson, A., Schoderboeck, L., Logan, B. J., … Hughes, S. M., & Abraham, W. C. (2018). Adult-born dentate granule cell excitability depends on the interaction of neuron age, ontogenetic age and experience. Brain Structure & Function, 223(7), 3213-3228. doi: 10.1007/s00429-018-1685-2

Oliphant, A., Alexander, J. L., Swain, M. T., Webster, S. G., & Wilcockson, D. C. (2018). Transcriptomic analysis of crustacean neuropeptide signaling during the moult cycle in the green shore crab, Carcinus maenas. BMC Genomics, 19, 711. doi: 10.1186/s12864-018-5057-3

Parakra, R. D., Kleffmann, T., Jameson, G. N. L., & Ledgerwood, E. C. (2018). The proportion of Met80-sulfoxide dictates peroxidase activity of human cytochrome c. Dalton Transactions, 47, 9128. doi: 10.1039/c8dt02185f

Peruzza, L., Gerdol, M., Oliphant, A., Wilcockson, D., Pallavicini, A., Hawkins, L., … Hauton, C. (2018). The consequences of daily cyclic hypoxia on a European grass shrimp: From short-term responses to long-term effects. Functional Ecology, 32(10), 2333-2344. doi: 10.1111/1365-2435.13150

Pirro, M., Bianconi, V., Schiaroli, E., Francisci, D., Mannarino, M. R., Bagaglia, F., … Merriman, T., & Baldelli, F. (2018). Elevated serum uric acid levels are associated with endothelial dysfunction in HIV patients receiving highly-active antiretroviral therapy. Atherosclerosis, 272, 101-107. doi: 10.1016/j.atherosclerosis.2018.03.031

Poulter, R. T. M., Ho, J., Handley, T., Taiaroa, G., & Butler, M. I. (2018). Comparison between complete genomes of an isolate of Pseudomonas syringae pv. actinidiae from Japan and a New Zealand isolate of the pandemic lineage. Scientific Reports, 8, 10915. doi: 10.1038/s41598-018-29261-5

Poynton, H. C., Hasenbein, S., Benoit, J. B., Sepulveda, M., Poelchau, M. F., Hughes, D. S. T., … Cridge, A. G., … Richards, S. (2018). The toxicogenome of Hyalella azteca: A model for sediment ecotoxicology and evolutionary toxicology. Environmental Science & Technology, 52(10), 6009-6022. doi: 10.1021/acs.est.8b00837

Pushparajan, C., Goswami, S. K., McAdam, C. J., Hanton, L. R., Dearden, P. K., Moratti, S. C., & Cridge, A. G. (2018). A mechanically strengthened polyacrylamide gel matrix fully compatible with electrophoresis of proteins and nucleic acids. Electrophoresis, 39(5-6), 824-832. doi: 10.1002/elps.201700303

Roberts, R. L., Wallace, M. C., Harrison, A. A., White, D., Dalbeth, N., Stamp, L. K., … Highton, J., Merriman, T. R., … Stebbings, S. M. (2018). Association of Crohn's disease-related chromosome 1q32 with ankylosing spondylitis is independent of bowel symptoms and faecal calprotectin. PeerJ, 6, e5088. doi: 10.7717/peerj.5088

Rodger, E. J., Porteous, C. M., Jones, G. T., Legge, M., Kleffmann, T., & McCormick, S. P. A. (2018). Proteomic analysis of liver from lipoprotein(a) transgenic mice shows an oxidative stress and lipid export response. BioMed Research International, 2018, 4963942. doi: 10.1155/2018/4963942

Ryder, K., Ali, M. A., Billakanti, J., & Carne, A. (2018). Fundamental characterisation of caseins harvested by dissolved air flotation from dairy wastewater and comparison with skim milk powder. International Dairy Journal, 78, 112-121. doi: 10.1016/j.idairyj.2017.11.007

Saunus, J. M., Smart, C. E., Kutasovic, J. R., Johnston, R. L., Kalita-de Croft, P., Miranda, M., … Sarkar, D., … Lakhani, S. R. (2018). Multidimensional phenotyping of breast cancer cell lines to guide preclinical research. Breast Cancer Research & Treatment, 167(1), 289-301. doi: 10.1007/s10549-017-4496-x

Sew Hoy, W., Antoun, J., Lin, W., Chandler, N., Merriman, T., & Farella, M. (2018). Ecological momentary assessment of pain in adolescents undergoing orthodontic treatment using a smartphone app. Seminars in Orthodontics, 24(2), 209-216. doi: 10.1053/j.sodo.2018.04.002

Silvestro, D., Warnock, R. C. M., Gavryushkina, A., & Stadler, T. (2018). Closing the gap between palaeontological and neontological speciation and extinction rate estimates. Nature Communications, 9(1), 5237. doi: 10.1038/s41467-018-07622-y

Stadler, T., Gavryushkina, A., Warnock, R. C. M., Drummond, A. J., & Heath, T. A. (2018). The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes. Journal of Theoretical Biology, 447, 41-55. doi: 10.1016/j.jtbi.2018.03.005

Stovall, W. R., Taylor, H. R., Black, M., Grosser, S., Rutherford, K., & Gemmell, N. J. (2018). Genetic sex assignment in wild populations using genotyping‐by‐sequencing data: A statistical threshold approach. Molecular Ecology Resources, 18(2), 179-190. doi: 10.1111/1755-0998.12767

Sun, M., Vazquez, A. I., Reynolds, R. J., Singh, J. A., Reeves, M., Merriman, T. R., … de los Campos, G. (2018). Untangling the complex relationships between incident gout risk, serum urate, and its comorbidities. Arthritis Research & Therapy, 20(1), 90. doi: 10.1186/s13075-018-1558-3

Talaroa, G., Harbison-Price, N., Ferguson, S. A., Carter, G. P., Williamson, D. A., Macknight, R. C., Cook, G. M., & Helkal, A. (2018). Complete genome sequence of a New Zealand isolate of the bovine pathogen Streptococcus uberis. Genome Announcements, 6(9), e00119-18. doi: 10.1128/genomeA.00119-18

Tan, V. T. Y., Mockett, B. G., Ohline, S. M., Parfitt, K. D., Wicky, H. E., Peppercorn, K., Schoderboeck, L., Yahaya, M. F. b., Tate, W. P., Hughes, S. M., & Abraham, W. C. (2018). Lentivirus-mediated expression of human secreted amyloid precursor protein-alpha prevents development of memory and plasticity deficits in a mouse model of Alzheimer's disease. Molecular Brain, 11, 7. doi: 10.1186/s13041-018-0348-9

Tang, P.-C., MacKay, G. E., Flockhart, J. H., Keighren, M. A., Kopakaki, A., & West, J. D. (2018). Selection against BALB/c strain cells in mouse chimaeras. Biology Open, 7, bio030189. doi: 10.1242/bio.030189

Taylor, E. S., McCall, J. L., Shen, S., Girardin, A., Munro, F. M., Black, M. A., Ward-Hartstonge, K. A., & Kemp, R. A. (2018). Prognostic roles for IL-2-producing and CD69⁺ T cell subsets in colorectal cancer patients. International Journal of Cancer, 143(8), 2008-2016. doi: 10.1002/ijc.31598

Thomas, A., Routh, E. D., Pullikuth, A., Jin, G., Su, J., Chou, J. W., … Black, M. A., … Miller, L. D. (2018). Tumor mutational burden is a determinant of immune-mediated survival in breast cancer. OncoImmunology, 7(10), e1490854. doi: 10.1080/2162402X.2018.1490854

Tomek, P., Gore, S. K., Potts, C. L., Print, C. G., Black, M. A., Hallermayr, A., … Ching, L.-M. (2018). Imprinted and ancient gene: A potential mediator of cancer cell survival during tryptophan deprivation. Cell Communication & Signaling, 16, 88. doi: 10.1186/s12964-018-0301-7

Ton, K. N. T., Cree, S. L., Gronert-Sum, S. J., Merriman, T. R., Stamp, L. K., & Kennedy, M. A. (2018). Multiplexed nanopore sequencing of HLA-B locus in Māori and Pacific Island samples. Frontiers in Genetics, 9, 152. doi: 10.3389/fgene.2018.00152

Veale, A. J., Foster, B. J., Dearden, P. K., & Waters, J. M. (2018). Genotyping-by-sequencing supports a genetic basis for wing reduction in an alpine New Zealand stonefly. Scientific Reports, 8, 16275. doi: 10.1038/s41598-018-34123-1

Wai, D. C., Szyszka, T. N., Campbell, A. E., Kwong, C., Wilkinson-White, L. E., Silva, A. P. G., … Chalmers, J. N., Patrick, W. M., … Mackay, J. P. (2018). The BRD3 ET domain recognizes a short peptide motif through a mechanism that is conserved across chromatin remodelers and transcriptional regulators. Journal of Biological Chemistry, 293, 7160-7175. doi: 10.1074/jbc.RA117.000678

Wan Taib, W. R., Adanan, M., Yunus, N. M., Lin, T. H., Ghazali, W. S. W., Phipps-Green, A. J., & Merriman, T. R. (2018). Association of solute carrier family 2, member 9 (SLC2A9) genetic variant rs3733591 with gout in a Malay sample set. Medical Journal of Malaysia, 73(5), 307-310.

Watkins, O. C., Sharpe, M. L., Perry, N. B., & Krause, K. L. (2018). New Zealand glowworm (Arachnocampa luminosa) bioluminescence is produced by a firefly-like luciferase but an entirely new luciferin. Scientific Reports, 8(3278). doi: 10.1038/s41598-018-21298-w

Wee, B. A., Tai, A. S., Sherrard, L. J., Ben Zakour, N. L., Hanks, K. R., Kidd, T. J., Ramsay, K. A., Lamont, I., … Beatson, S. A. (2018). Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre. BMC Genomics, 19, 644. doi: 10.1186/s12864-018-5018-x

Wheeler, N. E., Gardner, P. P., & Barquist, L. (2018). Machine learning identifies signatures of host adaptation in the bacterial pathogen Salmonella enterica. PLoS Genetics, 14(5), e1007333. doi: 10.1371/journal.pgen.1007333

Wright, D. F. B., Dalbeth, N., Phipps-Green, A. J., Merriman, T. R., Barclay, M. L., Drake, J., … Stamp, L. K. (2018). The impact of diuretic use and ABCG2 genotype on the predictive performance of a published allopurinol dosing tool. British Journal of Clinical Pharmacology, 84(5), 937-943. doi: 10.1111/bcp.13516

Wu, R., Wang, T., Allan, A. C., Macknight, R. C., & Varkonyi-Gasic, E. (2018). Overexpression of both AcSVP1 and AcSVP4 delays budbreak in kiwifruit A. chinensis var. deliciosa, but only AcSVP1 delays flowering in model plants. Environmental & Experimental Botany, 153, 262-270. doi: 10.1016/j.envexpbot.2018.06.010

Wu, R., Wang, T., Warren, B. A. W., Thomson, S. J., Allan, A. C., Macknight, R. C., & Varkonyi‑Gasic, E. (2018). Kiwifruit SVP2 controls developmental and drought-stress pathways. Plant Molecular Biology, 96(3), 233-244. doi: 10.1007/s11103-017-0688-3

Al-Ani, A. H., Antoun, J. S., Thomson, W. M., Merriman, T. R., & Farella, M. (2017). Maternal smoking during pregnancy is associated with offspring hypodontia. Journal of Dental Research, 96(9), 1014-1019. doi: 10.1177/0022034517711156

Antoun, J. S., Thomson, W. M., Merriman, T. R., & Farella, M. (2017). Self-reported oral behaviour habits in hyperdivergent and normodivergent facial types. Journal of Oral Rehabilitation, 44(1), 16-21. doi: 10.1111/joor.12452

Antoun, J. S., Thomson, W. M., Merriman, T. R., Rongo, R., & Farella, M. (2017). Impact of skeletal divergence on oral health-related quality of life and self-reported jaw function. Korean Journal of Orthodontics, 47(3), 186-194. doi: 10.4041/kjod.2017.47.3.186

Ariazi, E. A., Taylor, J. C., Black, M. A., Nicolas, E., Slifker, M. J., Azzam, D. J., & Boyd, J. (2017). A new role for ERα: Silencing via DNA methylation of basal, stem cell, and EMT genes. Molecular Cancer Research, 15(2). doi: 10.1158/1541-7786.mcr-16-0283

Best, H. L., Neverman, N. J., Wicky, H. E., Mitchell, N. L., Leitch, B., & Hughes, S. M. (2017). Characterisation of early changes in ovine CLN5 and CLN6 Batten disease neural cultures for the rapid screening of therapeutics. Neurobiology of Disease, 100, 62-74. doi: 10.1016/j.nbd.2017.01.001

Bishop, T. F., Martin, L. W., & Lamont, I. L. (2017). Activation of a cell surface signaling pathway in Pseudomonas aeruginosa requires ClpP protease and new sigma factor synthesis. Frontiers in Microbiology, 8, 2442. doi: 10.3389/fmicb.2017.02442

Bougen-Zhukov, N., Loh, S. Y., Lee, H. K., & Loo, L.-H. (2017). Large-scale image-based screening and profiling of cellular phenotypes. Cytometry Part A, 91(2), 115-125. doi: 10.1002/cyto.a.22909

Cabout, S., Leask, M. P., Varghese, S., Yi, J., Peters, B., Conze, L. L., … Brownfield, L. (2017). The meiotic regulator JASON utilizes alternative translation initiation sites to produce differentially localized forms. Journal of Experimental Botany, 68(15), 4205-4217. doi: 10.1093/jxb/erx222

Cadzow, M., Merriman, T. R., & Dalbeth, N. (2017). Performance of gout definitions for genetic epidemiological studies: Analysis of UK Biobank. Arthritis Research & Therapy, 19(1), 181. doi: 10.1186/s13075-017-1390-1

Chatterjee, A., Macaulay, E. C., Ahn, A., Ludgate, J. L., Stockwell, P. A., Weeks, R. J., Parry, M. F., Foster, T. J., … Eccles, M. R., & Morison, I. M. (2017). Comparative assessment of DNA methylation patterns between reduced representation bisulfite sequencing and Sequenom EpiTyper methylation analysis. Epigenomics, 9(6), 823-832. doi: 10.2217/epi-2016-0176

Chatterjee, A., Stockwell, P. A., Ahn, A., Rodger, E. J., Leichter, A. L., & Eccles, M. R. (2017). Genome-wide methylation sequencing of paired primary and metastatic cell lines identifies common DNA methylation changes and a role for EBF3 as a candidate epigenetic driver of melanoma metastasis. Oncotarget, 8(4), 6085-6101. doi: 10.18632/oncotarget.14042

Christensen, E. M., Patel, S. M., Korasick, D. A., Campbell, A. C., Krause, K. L., Becker, D. F., & Tanner, J. J. (2017). Resolving the cofactor-binding site in the proline biosynthetic enzyme human pyrroline-5-carboxylate reductase 1. Journal of Biological Chemistry, 292(17), 7233-7243. doi: 10.1074/jbc.M117.780288

Chung, I.-M., Rahuman, A. A., Marimuthu, S., Kirthi, A. V., Anbarasan, K., Parthasarathy, P., & Rajakumar, G. (2017). Green synthesis of copper nanoparticles using Eclipta prostrata leaves extract and their antioxidant and cytotoxic activities. Experimental & Therapeutic Medicine, 14(1), 18-24. doi: 10.3892/etm.2017.4466

Clare, A. J., Wicky, H. E., Empson, R. M., & Hughes, S. M. (2017). RNA-sequencing analysis reveals a regulatory role for transcription factor Fezf2 in the mature motor cortex. Frontiers in Molecular Neuroscience, 10, 283. doi: 10.3389/fnmol.2017.00283

Clark, A. L., King, C. L., Buckley, H. R., Collins, C. J., Dhavale, N., Elliott, G. E., Gosling, A., Halcrow, S. E., … Matisoo-Smith, E., … Tromp, M., Ward, S., & West, K. (2017). Biological anthropology in the indo-pacific region: New approaches to age-old questions. Journal of Indo-Pacific Archaeology, 41, 78-94.

Cleophas, M. C., Joosten, L. A., Stamp, L. K., Dalbeth, N., Woodward, O. M., & Merriman, T. R. (2017). ABCG2 polymorphisms in gout: Insights into disease susceptibility and treatment approaches. Pharmacogenomics & Personalized Medicine, 10, 129-142. doi: 10.2147/pgpm.s105854

Cridge, A. G., Lovegrove, M. R., Skelly, J. G., Taylor, S. E., Petersen, G. E. L., Cameron, R. C., & Dearden, P. K. (2017). The honeybee as a model insect for developmental genetics. Genesis, 55(5), e23019. doi: 10.1002/dvg.23019

Dalbeth, N., Allan, J., Gamble, G. D., Phipps-Green, A., Flynn, T. J., Mihov, B., … Stamp, L. K., & Merriman, T. R. (2017). Influence of genetic variants on renal uric acid handling in response to frusemide: An acute intervention study. RMD Open, 3(1), e000424. doi: 10.1136/rmdopen-2016-000424

De Smit, E., Clarke, L., Sanfilippo, P. G., Merriman, T. R., Brown, M. A., Hill, C. L., … Giant Cell Arteritis Pathology Network. (2017). Geo-epidemiology of temporal artery biopsy-positive giant cell arteritis in Australia and New Zealand: Is there a seasonal influence? RMD Open, 3(2), e000531. doi: 10.1136/rmdopen-2017-000531

Edgar, R. J., Hampton, G. E., Casas Garcia, G. P., Maher, M. J., Perugini, M. A., Ackerley, D. F., & Lamont, I. L. (2017). Integrated activities of two alternative sigma factors coordinate iron acquisition and uptake by Pseudomonas aeruginosa. Molecular Microbiology, 106(6), 891-904. doi: 10.1111/mmi.13855

Ellison-Loschmann, L., Sporle, A., Corbin, M., Cheng, S., Harawira, P., Gray, M., … Guilford, P., … Pearce, N. (2017). Risk of stomach cancer in Aotearoa/New Zealand: A Māori population based case-control study. PLoS ONE, 12(7), e0181581. doi: 10.1371/journal.pone.0181581

Fagerlund, R. D., Wilkinson, M. E., Klykov, O., Barendregt, A., Pearce, F. G., Kieper, S. N., Maxwell, H. W. R., … Krause, K. L., Bostina, M., … Staals, R. H. J., & Fineran, P. C. (2017). Spacer capture and integration by a type I-F Cas1–Cas2-3 CRISPR adaptation complex. PNAS, 114(26), E5122-E5128. doi: 10.1073/pnas.1618421114

Ferla, M. P., Brewster, J. L., Hall, K. R., Evans, G. B., & Patrick, W. M. (2017). Primordial-like enzymes from bacteria with reduced genomes. Molecular Microbiology, 105(4), 508-524. doi: 10.1111/mmi.13737

Filipčík, P., Curry, J. R., & Mace, P. D. (2017). When worlds collide: Mechanisms at the interface between phosphorylation and ubiquitination. Journal of Molecular Biology, 429(8), 1097-1113. doi: 10.1016/j.jmb.2017.02.011

Finn, T. J., Shewaramani, S., Leahy, S. C., Janssen, P. H., & Moon, C. D. (2017). Dynamics and genetic diversification of Escherichia coli during experimental adaptation to an anaerobic environment. PeerJ, 5, e3244. doi: 10.7717/peerj.3244

Fukuzawa, R., Anaka, M. R., Morison, I. M., & Reeve, A. E. (2017). The developmental programme for genesis of the entire kidney is recapitulated in Wilms tumour. PLoS ONE, 12(10), e0186333. doi: 10.1371/journal.pone.0186333

Gerth, M. L., Liu, Y., Jiao, W., Zhang, X.-X., Baker, E. N., Lott, J. S., … Johnston, J. M. (2017). Crystal structure of a bicupin protein HutD involved in histidine utilization in Pseudomonas. Proteins, 85(8), 1580-1588. doi: 10.1002/prot.25303

Haddadian, Z., Eyres, G. T., Carne, A., Everett, D. W., & Bremer, P. (2017). Impact of different milk fat globule membrane preparations on protein composition, xanthine oxidase activity, and redox potential. International Dairy Journal, 64, 14-21. doi: 10.1016/j.idairyj.2016.09.006

He, W., Phipps-Green, A., Stamp, L. K., Merriman, T. R., & Dalbeth, N. (2017). Population-specific association between ABCG2 variants and tophaceous disease in people with gout. Arthritis Research & Therapy, 19(1), 43. doi: 10.1186/s13075-017-1254-8

Higashino, T., Takada, T., Nakaoka, H., Toyoda, Y., Stiburkova, B., Miyata, H., … Merriman, T. R., … Matsuo, H. (2017). Multiple common and rare variants of ABCG2 cause gout. RMD Open, 3(2), e000464. doi: 10.1136/rmdopen-2017-000464

Hilliam, Y., Moore, M. P., Lamont, I. L., Bilton, D., Haworth, C. S., Foweraker, J., … Winstanley, C. (2017). Pseudomonas aeruginosa adaptation and diversification in the non-cystic fibrosis bronchiectasis lung. European Respiratory Journal, 49(4), 1602108. doi: 10.1183/13993003.02108-2016

Hoeksema, K., Wee, R., Macdonald, A., Guilford, P., Wall, J., & Cornwall, J. (2017). Where to from here? Posthumous healthcare data, digital e(lectronic)-mortality and New Zealand’s healthcare future. New Zealand Medical Journal, 130(1459), 64-70. Retrieved from http://www.nzma.org.nz/journal

Jackson, S. A., & Eaton-Rye, J. J. (2017). Modular growth vessels for the cultivation of the cyanobacterium Synechococcus sp. PCC 7002. New Zealand Journal of Botany, 55(1), 14-24. doi: 10.1080/0028825X.2016.1231123

Jones, G. T., Tromp, G., Kuivaniemi, H., Gretarsdottir, S., Baas, A. F., Giusti, B., … Phillips, L. V., Williams, M. J. A., Wei, W., … Thomson, I. A., Krysa, J., Hill, G. B., Roake, J., Merriman, T. R., … van Rij, A., … Bown, M. J. (2017). Meta-analysis of genome-wide association studies for abdominal aortic aneurysm identifies four new disease-specific risk loci. Circulation Research, 120, 341-353. doi: 10.1161/circresaha.116.308765

Kavalieris, L., O'Sullivan, P., Frampton, C., Guilford, P., Darling, D., Jacobson, E., … Lotan, Y. (2017). Performance characteristics of a multigene urine biomarker test for monitoring for recurrent urothelial carcinoma in a multicenter study. Journal of Urology, 197(6), 1419-1426. doi: 10.1016/j.juro.2016.12.010

Kelly, S. T., & Spencer, H. G. (2017). Population-genetic models of sex-limited genomic imprinting. Theoretical Population Biology, 115, 35-44. doi: 10.1016/j.tpb.2017.03.004

Khan, A. A., Randhawa, M. A., Carne, A., Ahmed, I. A. M., Barr, D., Reid, M., & Bekhit, A. E.-D. A. (2017). Effect of low and high pulsed electric field on the quality and nutritional minerals in cold boned beef M. longissimus et lumborum. Innovative Food Science & Emerging Technologies, 41, 135-143. doi: 10.1016/j.ifset.2017.03.002

Lamping, E., Zhu, J.-y., Niimi, M., & Cannon, R. D. (2017). Role of ectopic gene conversion in the evolution of a Candida krusei pleiotropic drug resistance transporter family. Genetics, 205(4), 1619-1639. doi: 10.1534/genetics.116.194811

Lawrence, S. A., Armstrong, C. B., Patrick, W. M., & Gerth, M. L. (2017). High-throughput chemical screening identifies compounds that inhibit different stages of the Phytophthora agathidicida and Phytophthora cinnamomi life cycles. Frontiers in Microbiology, 8, 1340. doi: 10.3389/fmicb.2017.01340

Lawrence, S. A., Floge, S. A., Davy, J. E., Davy, S. K., & Wilson, W. H. (2017). Exploratory analysis on Symbiodinium transcriptomes reveals potential latent infection by large dsDNA viruses. Environmental Microbiology, 19(10), 3909-3919. doi: 10.1111/1462-2920.13782

Lechtenberg, B. C., Mace, P. D., Sessions, E. H., Williamson, R., Stalder, R., Wallez, Y., … Pasquale, E. B. (2017). Structure-guided strategy for the development of potent bivalent ERK inhibitors. ACS Medicinal Chemistry Letters, 8(7), 726-731. doi: 10.1021/acsmedchemlett.7b00127

Ledgerwood, E. C., Marshall, J. W. A., & Weijman, J. F. (2017). The role of peroxiredoxin 1 in redox sensing and transducing. Archives of Biochemistry & Biophysics, 617, 60-67. doi: 10.1016/j.abb.2016.10.009

Lee, S. L. J., Horsfield, J. A., Black, M. A., Rutherford, K., Fisher, A., & Gemmell, N. J. (2017). Histological and transcriptomic effects of 17α-methyltestosterone on zebrafish gonad development. BMC Genomics, 18, 557. doi: 10.1186/s12864-017-3915-z

Liu, Y.-F., Oey, I., Bremer, P., Carne, A., & Silcock, P. (2017). Effects of pH, temperature and pulsed electric fields on the turbidity and protein aggregation of ovomucin-depleted egg white. Food Research International, 91, 161-170. doi: 10.1016/j.foodres.2016.12.005

Liu, Y.-F., Oey, I., Bremer, P., Silcock, P., & Carne, A. (2017). In vitro peptic digestion of ovomucin-depleted egg white affected by pH, temperature and pulsed electric fields. Food Chemistry, 231, 165-174. doi: 10.1016/j.foodchem.2017.03.136

Loo, L.-H., Bougen-Zhukov, N. M., & Tan, W.-L. C. (2017). Early spatiotemporal-specific changes in intermediate signals are predictive of cytotoxic sensitivity to TNFα and co-treatments. Scientific Reports, 7, 43541. doi: 10.1038/srep43541

Lotan, Y., OʼSullivan, P., Raman, J. D., Shariat, S. F., Kavalieris, L., Frampton, C., Guilford, P., … Darling, D. (2017). Clinical comparison of noninvasive urine tests for ruling out recurrent urothelial carcinoma. Urologic Oncology, 35(8), 513.e15-513.e22. doi: 10.1016/j.urolonc.2017.03.008

Ludgate, J. L., Wright, J., Stockwell, P. A., Morison, I. M., Eccles, M. R., & Chatterjee, A. (2017). A streamlined method for analysing genome-wide DNA methylation patterns from low amounts of FFPE DNA. BMC Medical Genomics, 10, 54. doi: 10.1186/s12920-017-0290-1

Macknight, R. C., Laing, W. A., Bulley, S. M., Broad, R. C., Johnson, A. A. T., & Hellens, R. P. (2017). Increasing ascorbate levels in crops to enhance human nutrition and plant abiotic stress tolerance. Current Opinion in Biotechnology, 44, 153-160. doi: 10.1016/j.copbio.2017.01.011

Maddock, D. J., Gerth, M. L., & Patrick, W. M. (2017). An engineered glycerol dehydratase with improved activity for the conversion of meso-2,3-butanediol to butanone. Biotechnology, 12(12), 1700480. doi: 10.1002/biot.201700480

McInnes, T., Zou, D., Rao, D. S., Munro, F. M., Phillips, V. L., McCall, J. L., Black, M. A., Reeve, A. E., & Guilford, P. J. (2017). Genome-wide methylation analysis identifies a core set of hypermethylated genes in CIMP-H colorectal cancer. BMC Cancer, 17, 228. doi: 10.1186/s12885-017-3226-4

Merriman, T. (2017). Genomic Influences on hyperuricemia and gout. Rheumatic Disease Clinics of North America, 43(3), 389-399. doi: 10.1016/j.rdc.2017.04.004

Mesarich, C. H., Rees-George, J., Gardner, P. P., Ghomi, F. A., Gerth, M. L., Andersen, M. T., … Fineran, P. C., & Templeton, M. D. (2017). Transposon insertion libraries for the characterization of mutants from the kiwifruit pathogen Pseudomonas syringae pv. actinidiae. PLoS ONE, 12(3), e0172790. doi: 10.1371/journal.pone.0172790

Middleton, A. J., Budhidarmo, R., Das, A., Zhu, J., Foglizzo, M., Mace, P. D., & Day, C. L. (2017). The activity of TRAF RING homo- and heterodimers is regulated by zinc finger 1. Nature Communications, 8, 1788. doi: 10.1038/s41467-017-01665-3

Middleton, A. J., Wright, J. D., & Day, C. L. (2017). Regulation of E2s: A role for additional ubiquitin binding sites? Journal of Molecular Biology, 429(22), 3430-3440. doi: 10.1016/j.jmb.2017.06.008

Morris, J. N., Eaton-Rye, J. J., & Summerfield, T. C. (2017). Phenotypic variation in wild-type substrains of the model cyanobacterium Synechocystis sp. PCC 6803. New Zealand Journal of Botany, 55(1), 25-35. doi: 10.1080/0028825X.2016.1231124

Morton, S. E., O'Hare, K. J. M., Maha, J. L. K., Nicolson, M. P., Machado, L., Topless, R., Merriman, T. R., & Linscott, R. J. (2017). Testing the validity of taxonic schizotypy using genetic and environmental risk variables. Schizophrenia Bulletin, 43(3), 633-643. doi: 10.1093/schbul/sbw108

Mros, S., Carne, A., Ha, M., Bekhit, A. E.-D., Young, W., & McConnell, M. (2017). Comparison of the bioactivity of whole and skimmed digested sheep milk with that of digested goat and cow milk in functional cell culture assays. Small Ruminant Research, 149, 202-208. doi: 10.1016/j.smallrumres.2017.02.018

Murphy, J. M., Mace, P. D., & Eyers, P. A. (2017). Live and let die: Insights into pseudoenzyme mechanisms from structure. Current Opinion in Structural Biology, 47, 95-104. doi: 10.1016/j.sbi.2017.07.004

Muthukaruppan, A., Lasham, A., Blenkiron, C., Woad, K. J., Black, M. A., Knowlton, N., … Shelling, A. N. (2017). Gene expression profling of breast tumours from New Zealand patients. New Zealand Medical Journal, 130(1464), 40-56. Retrieved from http://www.nzma.org.nz/journal

Muthukaruppan, A., Lasham, A., Woad, K. J., Black, M. A., Blenkiron, C., Miller, L. D., Harris, G., … Findlay, M. P., … Print, C. G. (2017). Multimodal assessment of estrogen receptor mRNA profiles to quantify estrogen pathway activity in breast tumors. Clinical Breast Cancer, 17(2), 139-153. doi: 10.1016/j.clbc.2016.09.001

Nakatani, Y., Opel-Reading, H. K., Merker, M., Machado, D., Andres, S., Kumar, S. S., … Aung, H. L., Cook, G. M., … Krause, K., & Köser, C. U. (2017). Role of alanine racemase mutations in Mycobacterium tuberculosis D-cycloserine resistance. Antimicrobial Agents & Chemotherapy, 61(12), e01575-17. doi: 10.1128/aac.01575-17

Nakayama, A., Nakaoka, H., Yamamoto, K., Sakiyama, M., Shaukat, A., Toyoda, Y., … Stamp, L. K., … Merriman, T. R., & Matsuo, H. (2017). GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes. Annals of the Rheumatic Diseases, 76(5), 869-877. doi: 10.1136/annrheumdis-2016-209632

Newton, M. S., Guo, X., Söderholm, A., Näsvall, J., Lundström, P., Andersson, D. I., … Patrick, W. M. (2017). Structural and functional innovations in the real-time evolution of new (βα)₈ barrel enzymes. PNAS, 114(18), 4727-4732. doi: 10.1073/pnas.1618552114

Nunn, S., & Lamont, I. (2017). Beauty is the beast. Junctures, 2017(18), 100-105.

Ong, L., McDonald, K. O., & Ledgerwood, E. C. (2017). Differentiation and cell density upregulate cytochrome c levels in megakaryoblastic cell lines: Implications for analysis of CYCS-associated thrombocytopenia. PLoS ONE, 12(12), e0190433. doi: 10.1371/journal.pone.0190433

Ong, L., Morison, I. M., & Ledgerwood, E. C. (2017). Megakaryocytes from CYCS mutation-associated thrombocytopenia release platelets by both proplatelet-dependent and -independent processes. British Journal of Haematology, 176(2), 268-279. doi: 10.1111/bjh.14421

Oulavallickal, T., Brewster, J. L., McKellar, J. L. O., Fairhurst, M. J., Tenci, N. A., & Gerth, M. L. (2017). The Pseudomonas syringae pv. actinidiae chemoreceptor protein F (PscF) periplasmic sensor domain: Cloning, purification and X-ray crystallographic analysis. Acta Crystallographica Section F, 73(12), 701-705. doi: 10.1107/s2053230x17016831

Parthasarathy, P. (2017). Exploring genetic cues to solve the gout mystery. Junctures, 2017(18), 68-69.

Peters, B., Casey, J., Aidley, J., Zohrab, S., Borg, M., Twell, D., & Brownfield, L. (2017). A conserved cis-regulatory module determines germline fate through activation of the transcription factor DUO1 promoter. Plant Physiology, 173, 280-293. doi: 10.1104/pp.16.01192

Pirro, M., Mannarino, M. R., Bianconi, V., De Vuono, S., Sahebkar, A., Bagaglia, F., … Merriman, T. (2017). Uric acid and bone mineral density in postmenopausal osteoporotic women: The link lies within the fat. Osteoporosis International, 28(3), 973-981. doi: 10.1007/s00198-016-3792-3

Poulter, R., Taiaroa, G., Sumpter, N., Stockwell, P., & Butler, M. (2017). Complete genome sequence of the kiwifruit pathogen Pseudomonas syringae pv. actinidiae biovar 5, originating from Japan. Genome Announcements, 5(50), e01409-17. doi: 10.1128/genomeA.01409-17

Prat, A., Lluch, A., Turnbull, A. K., Dunbier, A. K., Calvo, L., Albanell, J., … Alba, E. (2017). A PAM50-based chemoendocrine score for hormone receptor-positive breast cancer with an intermediate risk of relapse. Clinical Cancer Research, 23(12). doi: 10.1158/1078-0432.ccr-16-2092

Pushparajan, C., Claus, J. D., Marshall, S. D. G., & Visnovsky, G. (2017). Nutritional demands and metabolic characteristics of the DSIR-HA-1179 insect cell line during growth and infection with the Oryctes nudivirus. In Vitro Cellular & Developmental Biology: Animal, 53(10), 908-912. doi: 10.1007/s11626-017-0206-6

Rasheed, H., Stamp, L. K., Dalbeth, N., & Merriman, T. R. (2017). Interaction of the GCKR and A1CF loci with alcohol consumption to influence the risk of gout. Arthritis Research & Therapy, 19, 161. doi: 10.1186/s13075-017-1369-y

Ridge, S., Deokar, A., Lee, R., Daba, K., Macknight, R. C., Weller, J. L., & Tar’an, B. (2017). The chickpea Early Flowering 1 (Efl1) locus is an ortholog of Arabidopsis ELF3. Plant Physiology, 175, 802-815. doi: 10.1104/pp.17.00082

Roberts, R. L., Wallace, M. C., Phipps-Green, A. J., Topless, R., Drake, J. M., Tan, P., … Merriman, T. R., & Stamp, L. K. (2017). ABCG2 loss-of-function polymorphism predicts poor response to allopurinol in patients with gout. Pharmacogenomics Journal, 17, 201-203. doi: 10.1038/tpj.2015.101

Ryder, K., Ali, M. A., Carne, A., & Billakanti, J. (2017). The potential use of dairy by-products for the production of non-food biomaterials. Critical Reviews in Environmental Science & Technology, 47(8), 621-642. doi: 10.1080/10643389.2017.1322875

Saha, S., Hosmani, P. S., Villalobos-Ayala, K., Miller, S., Shippy, T., Flores, M., … Cridge, A., … Brown, S. J. (2017). Improved annotation of the insect vector of citrus greening disease: Biocuration by a diverse genomics community. Database, 2017, bax032. doi: 10.1093/database/bax032

Schmid, J., Day, R., Zhang, N., Dupont, P.-Y., Cox, M. P., Schardl, C. L., … Zhou, Y. (2017). Host tissue environment directs activities of an Epichloë endophyte, while it induces systemic hormone and defense responses in its native perennial ryegrass host. Molecular Plant-Microbe Interactions, 30(2), 138-149. doi: 10.1094/mpmi-10-16-0215-r

Seybold, A. C., Wharton, D. A., Thorne, M. A. S., & Marshall, C. J. (2017). Investigating trehalose synthesis genes after cold acclimation in the Antarctic nematode Panagrolaimus sp. DAW1. Biology Open, 6, 1953-1959. doi: 10.1242/bio.023341

Sharma, M., Redpath, G. M., Williams, M. J. A., & McCormick, S. P. A. (2017). Recycling of apolipoprotein(a) after PlgRKT-mediated endocytosis of lipoprotein(a). Circulation Research, 120(7), 1091-1102. doi: 10.1161/circresaha.116.310272

Sharp, L., Pratt, T., Mackay, G. E., Keighren, M. A., Flockhart, J. H., Chandler, E. J., … West, J. D. (2017). Comparison of two related lines of tauGFP transgenic mice designed for lineage tracing. BMC Developmental Biology, 17, 8. doi: 10.1186/s12861-017-0149-x

Shavandi, A., Bekhit, A. E.-D. A., Carne, A., & Bekhit, A. (2017). Evaluation of keratin extraction from wool by chemical methods for bio-polymer application. Journal of Bioactive & Compatible Polymers, 32(2), 163-177. doi: 10.1177/0883911516662069

Shavandi, A., Carne, A., Bekhit, A. A., & Bekhit, A. E.-D. A. (2017). An improved method for solubilisation of wool keratin using peracetic acid. Journal of Environmental Chemical Engineering, 5(2), 1977-1984. doi: 10.1016/j.jece.2017.03.043

Shavandi, A., Hu, Z., Teh, S., Zhao, J., Carne, A., Bekhit, A., & Bekhit, A. E.-D. A. (2017). Antioxidant and functional properties of protein hydrolysates obtained from squid pen chitosan extraction effluent. Food Chemistry, 227, 194-201. doi: 10.1016/j.foodchem.2017.01.099

Shewaramani, S., Finn, T. J., Leahy, S. C., Kassen, R., Rainey, P. B., & Moon, C. D. (2017). Anaerobically grown Escherichia coli has an enhanced mutation rate and distinct mutational spectra. PLoS Genetics, 13(1), e1006570. doi: 10.1371/journal.pgen.1006570

Sopoaga, F., Kokaua, J., van der Meer, J., Lameta-Huro, M., Zaharic, T., Richards, R., & Inder, M. (2017). Evaluating the effectiveness of a programme for improving the participation and academic success of an underrepresented minority group in New Zealand. Evaluation & Program Planning, 65, 20-29. doi: 10.1016/j.evalprogplan.2017.06.002

Sopoaga, F., Zaharic, T., Kokaua, J., & Covello, S. (2017). Training a medical workforce to meet the needs of diverse minority communities. BMC Medical Education, 17, 19. doi: 10.1186/s12909-017-0858-7

Stayner, C., Poole, C. A., McGlashan, S. R., Pilanthananond, M., Brauning, R., Markie, D., … Slobbe, L., … Parker, K., Wiles, A., … Leichter, A., Leask, M., … Jennings, M., Horsfield, J. A., Walker, R. J., & Eccles, M. R. (2017). An ovine hepatorenal fibrocystic model of a Meckel-like syndrome associated with dysmorphic primary cilia and TMEM67 mutations. Scientific Reports, 7, 1601. doi: 10.1038/s41598-017-01519-4

Stiburkova, B., Pavelcova, K., Zavada, J., Petru, L., Simek, P., Cepek, P., … Merriman, T. R., & Pavelka, K. (2017). Functional non-synonymous variants of ABCG2 and gout risk. Rheumatology, 56(11), 1982-1992. doi: 10.1093/rheumatology/kex295

Summers, E. L., Cumming, M. H., Oulavallickal, T., Roberts, N. J., & Arcus, V. L. (2017). Structures and kinetics for plant nucleoside triphosphate diphosphohydrolases support a domain motion catalytic mechanism. Protein Science, 26(8), 1627-1638. doi: 10.1002/pro.3199

Ta, K. N., Adam, H., Staedler, Y. M., Schönenberger, J., Harrop, T., Tregear, J., … Jouannic, S. (2017). Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated African rice. EvoDevo, 8, 2. doi: 10.1186/s13227-017-0065-y

Tanner, C., Boocock, J., Stahl, E. A., Dobbyn, A., Mandal, A. K., Cadzow, M., Phipps-Green, A. J., Topless, R. K., … Stamp, L. K., … Merriman, T. R. (2017). Population specific resequencing associates the ATP binding cassette subfamily C member 4 (ABCC4) gene with gout in New Zealand Māori and Pacific men. Arthritis & Rheumatology, 69(7), 1461-1469. doi: 10.1002/art.40110

Thorne, M. A. S., Seybold, A., Marshall, C., & Wharton, D. (2017). Molecular snapshot of an intracellular freezing event in an Antarctic nematode. Cryobiology, 75, 117-124. doi: 10.1016/j.cryobiol.2017.01.003

Tirgar, M., Silcock, P., Carne, A., & Birch, E. J. (2017). Effect of extraction method on functional properties of flaxseed protein concentrates. Food Chemistry, 215, 417-424. doi: 10.1016/j.foodchem.2016.08.002

Todd, A. S., Walker, R. J., MacGinley, R. J., Kelly, J., Merriman, T. R., Major, T. J., & Johnson, R. J. (2017). Dietary sodium modifies serum uric acid concentrations in humans. American Journal of Hypertension, 30(12), 1196-1202. doi: 10.1093/ajh/hpx123

Vazirpanah, N., Kienhorst, L. B. E., Van Lochem, E., Wichers, C., Rossato, M., Shiels, P. G., … Stamp, L. K., Merriman, T. R., … Broen, J. C. A. (2017). Patients with gout have short telomeres compared with healthy participants: Association of telomere length with flare frequency and cardiovascular disease in gout. Annals of the Rheumatic Diseases, 76(7), 1309-1315. doi: 10.1136/annrheumdis-2016-210538

Wassenaar, M., & Major, T. (2017). Ties that bind. Junctures, 18, 48-52.

Wei, W.-H., Viatte, S., Merriman, T. R., Barton, A., & Worthington, J. (2017). Genotypic variability based association identifies novel non-additive loci DHCR7 and IRF4 in sero-negative rheumatoid arthritis. Scientific Reports, 7(1), 5261. doi: 10.1038/s41598-017-05447-1

Weijman, J. F., Kumar, A., Jamieson, S. A., King, C. M., Caradoc-Davies, T. T., Ledgerwood, E. C., … Mace, P. D. (2017). Structural basis of autoregulatory scaffolding by apoptosis signal-regulating kinase 1. PNAS, 114(11), E2096-E2105. doi: 10.1073/pnas.1620813114

Welsh, G., Ryder, K., Brewster, J., Walker, C., Mros, S., Bekhit, A. E.-D. A., McConnell, M., & Carne, A. (2017). Comparison of bioactive peptides prepared from sheep cheese whey using a food-grade bacterial and a fungal protease preparation. International Journal of Food Science & Technology, 52(5), 1252-1259. doi: 10.1111/ijfs.13392

Wharton, D. A., Marshall, C. J., & Egeter, B. (2017). Comparisons between two Antarctic nematodes: Cultured Panagrolaimus sp. DAW1 and field-sourced Panagrolaimus davidi. Nematology, 19(5), 533-542. doi: 10.1163/15685411-00003066

Wu, C., Jordan, M. D., Newcomb, R. D., Gemmell, N. J., Bank, S., Meusemann, K., Dearden, P. K., … Grosser, S., … Buckley, T. R. (2017). Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution. BMC Genomics, 18, 795. doi: 10.1186/s12864-017-4197-1

Wu, R., Tomes, S., Karunairetnam, S., Tustin, S. D., Hellens, R. P., Allan, A. C., Macknight, R. C., & Varkonyi-Gasic, E. (2017). SVP-like MADS box genes control dormancy and budbreak in apple. Frontiers in Plant Science, 8, 477. doi: 10.3389/fpls.2017.00477

Wu, R., Wang, T., Warren, B. A., Allan, A. C., Macknight, R. C., & Varkonyi-Gasic, E. (2017). Kiwifruit SVP2 gene prevents premature budbreak during dormancy. Journal of Experimental Botany, 68(5), 1071-1082. doi: 10.1093/jxb/erx014

Xiong, M., Jones, O. D., Peppercorn, K., Ohline, S. M., Tate, W. P., & Abraham, W. C. (2017). Secreted amyloid precursor protein-alpha can restore novel object location memory and hippocampal LTP in aged rats. Neurobiology of Learning & Memory, 138, 291-299. doi: 10.1016/j.nlm.2016.08.002

Ali, A., Rehman, A., & William, K. (2016). Phylogenetic analysis of Capra hircus commonly found goat breeds of Pakistan using DNA barcode. Journal of Bioresource Management, 3(1), 1. doi: 10.35691/JBM.6102.0039

Azevedo, P. M., Merriman, T. R., Topless, R. K., Wilson, N. J., Crengle, S., & Lennon, D. R. (2016). Association study involving polymorphisms in IL-6, IL-1RA, and CTLA4 genes and rheumatic heart disease in New Zealand population of Māori and Pacific ancestry. Cytokine, 85, 201-206. doi: 10.1016/j.cyto.2016.06.029

Bah, C. S. F., Bekhit, A. E.-D. A., Carne, A., & McConnell, M. A. (2016). Composition and biological activities of slaughterhouse blood from red deer, sheep, pig and cattle. Journal of the Science of Food & Agriculture, 96(1), 79-89. doi: 10.1002/jsfa.7062

Bah, C. S. F., Bekhit, A. E.-D. A., McConnell, M. A., & Carne, A. (2016). Generation of bioactive peptide hydrolysates from cattle plasma using plant and fungal proteases. Food Chemistry, 213, 98-107. doi: 10.1016/j.foodchem.2016.06.065

Bah, C. S. F., Carne, A., McConnell, M. A., Mros, S., & Bekhit, A. E.-D. A. (2016). Production of bioactive peptide hydrolysates from deer, sheep, pig and cattle red blood cell fractions using plant and fungal protease preparations. Food Chemistry, 202, 458-466. doi: 10.1016/j.foodchem.2016.02.020

Bekhit, A. E.-D. A., Suwandy, V., Carne, A., van de Ven, R., & Hopkins, D. L. (2016). Effect of repeated pulsed electric field treatment on the quality of hot boned beef loins and topsides. Meat Science, 111, 139-146. doi: 10.1016/j.meatsci.2015.09.001

Benoit, J. B., Adelman, Z. N., Reinhardt, K., Dolan, A., Poelchau, M., Jennings, E. C., … Duncan, E. J., … Richards, S. (2016). Unique features of a global human ectoparasite identified through sequencing of the bed bug genome. Nature Communications, 7, 10165. doi: 10.1038/ncomms10165

Biswas, A., Staals, R. H. J., Morales, S. E., Fineran, P. C., & Brown, C. M. (2016). CRISPRDetect: A flexible algorithm to define CRISPR arrays. BMC Genomics, 17, 356. doi: 10.1186/s12864-016-2627-0

Bond, D. M., Albert, N. W., Lee, R. H., Gillard, G. B., Brown, C. M., Hellens, R. P., & Macknight, R. C. (2016). Infiltration-RNAseq: Transcriptome profiling of Agrobacterium-mediated infiltration of transcription factors to discover gene function and expression networks in plants. Plant Methods, 12, 41. doi: 10.1186/s13007-016-0141-7

Brewster, J. L., McKellar, J. L. O., Finn, T. J., Newman, J., Peat, T. S., & Gerth, M. L. (2016). Structural basis for ligand recognition by a Cache chemosensory domain that mediates carboxylate sensing in Pseudomonas syringae. Scientific Reports, 6, 35198. doi: 10.1038/srep35198

Cadzow, M., Merriman, T. R., Boocock, J., Dalbeth, N., Stamp, L. K., Black, M. A., … Wilcox, P. L. (2016). Lack of direct evidence for natural selection at the candidate thrifty gene locus, PPARGC1A. BMC Medical Genetics, 17, 80. doi: 10.1186/s12881-016-0341-z

Chatterjee, A., Lagisz, M., Rodger, E. J., Zhen, L., Stockwell, P. A., Duncan, E. J., Horsfield, J. A., … Nakagawa, S. (2016). Sex differences in DNA methylation and expression in zebrafish brain: A test of an extended ‘male sex drive’ hypothesis. Gene, 590, 307-316. doi: 10.1016/j.gene.2016.05.042

Chatterjee, A., Macaulay, E. C., Rodger, E. J., Stockwell, P. A., Parry, M. F., Roberts, H. E., Slatter, T. L., Hung, N. A., Devenish, C. J., & Morison, I. M. (2016). Placental hypomethylation is more pronounced in genomic loci devoid of retroelements. Genes Genomes Genetics, 6(7), 1911-1921. doi: 10.1534/g3.116.030379

Chatterjee, A., Stockwell, P. A., Rodger, E. J., & Morison, I. M. (2016). Genome-scale DNA methylome and transcriptome profiling of human neutrophils. Scientific Data, 3, 160019. doi: 10.1038/sdata.2016.19

Chatterjee, A., Stockwell, P. A., Rodger, E. J., Parry, M. F., & Eccles, M. R. (2016). scan_tcga tools for integrated epigenomic and transcriptomic analysis of tumor subgroups. Epigenomics, 8(10), 1315-1330. doi: 10.2217/epi-2016-0063

Crawford, T. S., Eaton-Rye, J. J., & Summerfield, T. C. (2016). Mutation of Gly195 of the ChlH subunit of Mg-chelatase reduces chlorophyll and further disrupts PS II assembly in a Ycf48-deficient strain of Synechocystis sp. PCC 6803. Frontiers in Plant Science, 7, 1060. doi: 10.3389/fpls.2016.01060

Crawford, T. S., Hanning, K. R., Chua, J. P. S., Eaton-Rye, J. J., & Summerfield, T. C. (2016). Comparison of D1´- and D1-containing PS II reaction centre complexes under different environmental conditions in Synechocystis sp. PCC 6803. Plant, Cell & Environment, 39, 1715-1726. doi: 10.1111/pce.12738

Cridge, A. G., Dearden, P. K., & Brownfield, L. R. (2016). Convergent occurrence of the developmental hourglass in plant and animal embryogenesis? Annals of Botany, 117(5), 833-843. doi: 10.1093/aob/mcw024

Dalbeth, N., Merriman, T. R., & Stamp, L. K. (2016). Gout. Lancet, 388(10055), 2039-2052. doi: 10.1016/S0140-6736(16)00346-9

Damsteegt, E. L., Ozaki, Y., McCormick, S. P. A., & Lokman, P. M. (2016). Triacylglyceride physiology in the shortfinned eel, Anguilla australis: The effects of androgen. American Journal of Physiology: Regulatory, Integrative & Comparative Physiology, 310, R422-R431. doi: 10.1152/ajpregu.00149.2015

Duncan, E. J., Hyink, O., & Dearden, P. K. (2016). Notch signalling mediates reproductive constraint in the adult worker honeybee. Nature Communications, 7, 12427. doi: 10.1038/ncomms12427

Fatima, T., Altaf, S., Phipps-Green, A., Topless, R., Flynn, T. J., Stamp, L. K., … Merriman, T. R. (2016). Association analysis of the beta-3 adrenergic receptor Trp64Arg (rs4994) polymorphism with urate and gout. Rheumatology International, 36(2), 255-261. doi: 10.1007/s00296-015-3370-6

Fellner, M., Aloi, S., Tchesnokov, E. P., Wilbanks, S. M., & Jameson, G. N. L. (2016). Substrate and pH-dependent kinetic profile of 3-mercaptopropionate dioxygenase from Pseudomonas aeruginosa. Biochemistry, 55(9), 1362-1371. doi: 10.1021/acs.biochem.5b01203

Fellner, M., Siakkou, E., Faponle, A. S., Tchesnokov, E. P., de Visser, S. P., Wilbanks, S. M., & Jameson, G. N. L. (2016). Influence of cysteine 164 on active site structure in rat cysteine dioxygenase. Journal of Biological Inorganic Chemistry, 21, 501-510. doi: 10.1007/s00775-016-1360-0

Ferla, M. P. (2016). Mutanalyst, an online tool for assessing the mutational spectrum of epPCR libraries with poor sampling. BMC Bioinformatics, 17(1), 152. doi: 10.1186/s12859-016-0996-7

Flynn, T., Signal, B., Johnson, S. L., & Gemmell, N. J. (2016). Mitochondrial genome diversity among six laboratory zebrafish (Danio rerio) strains. Mitochondrial DNA, 27(6), 4364-4371. doi: 10.3109/19401736.2015.1089536

Foglizzo, M., Middleton, A. J., & Day, C. L. (2016). Structure and function of the RING domains of RNF20 and RNF40, dimeric E3 ligases that monoubiquitylate histone H2B. Journal of Molecular Biology, 428(20), 4073-4086. doi: 10.1016/j.jmb.2016.07.025

Galla, S. J., Buckley, T. R., Elshire, R., Hale, M. L., Knapp, M., McCallum, J., … Wilcox, P., & Steeves, T. E. (2016). Building strong relationships between conservation genetics and primary industry leads to mutually beneficial genomic advances. Molecular Ecology, 25(21), 5267-5281. doi: 10.1111/mec.13837

Germoni, L. A. P., Bremer, P. J., & Lamont, I. L. (2016). The effect of alginate lyase on the gentamicin resistance of Pseudomonas aeruginosa in mucoid biofilms. Journal of Applied Microbiology, 121(1), 126-135. doi: 10.1111/jam.13153

Gimenez, G., Metcalf, P., Paterson, N. G., & Sharpe, M. L. (2016). Mass spectrometry analysis and transcriptome sequencing reveal glowing squid crystal proteins are in the same superfamily as firefly luciferase. Scientific Reports, 6, 27638. doi: 10.1038/srep27638

Haddadian, Z., Bremer, P., Eyres, G. T., Carne, A., & Everett, D. W. (2016). The impact of cream churning conditions on xanthine oxidase activity and oxidation-reduction potential in model emulsion systems. International Dairy Journal, 60, 55-61. doi: 10.1016/j.idairyj.2016.01.017

Harrop, T. W. R., Din, I. U., Gregis, V., Osnato, M., Jouannic, S., Adam, H., & Kater, M. M. (2016). Gene expression profiling of reproductive meristem types in early rice inflorescences by laser microdissection. Plant Journal, 86(1), 75-88. doi: 10.1111/tpj.13147

Hellens, R. P., Brown, C. M., Chisnall, M. A. W., Waterhouse, P. M., & Macknight, R. C. (2016). The emerging world of small ORFs. Trends in Plant Science, 21(4), 317-328. doi: 10.1016/j.tplants.2015.11.005

Hou, Y., Shavandi, A., Carne, A., Bekhit, A. A., Ng, T. B., Cheung, R. C. F., & Bekhit, A. E.-D. A. (2016). Marine shells: Potential opportunities for extraction of functional and health-promoting materials. Critical Reviews in Environmental Science & Technology, 46(11-12), 1047-1116. doi: 10.1080/10643389.2016.1202669

Jenkins, G. M., Goddard, M. E., Black, M. A., Brauning, R., Auvray, B., Dodds, K. G., … McEwan, J. C. (2016). Copy number variants in the sheep genome detected using multiple approaches. BMC Genomics, 17, 441. doi: 10.1186/s12864-016-2754-7

Kabir, T. D., Leigh, R. J., Tasena, H., Mellone, M., Coletta, R. D., Parkinson, E. K., … Zou, D., McCall, J., … Lambert, D. W. (2016). A miR-335/COX-2/PTEN axis regulates the secretory phenotype of senescent cancer-associated fibroblasts. Aging, 8(8), 1608-1635. doi: 10.18632/aging.100987

Kannangara, D. R. W., Phipps-Green, A. J., Dalbeth, N., Stamp, L. K., Williams, K. M., Graham, G. G., … Merriman, T. R. (2016). Hyperuricaemia: Contributions of urate transporter ABCG2 and the fractional renal clearance of urate. Annals of the Rheumatic Diseases, 75, 1363-1366. doi: 10.1136/annrheumdis-2015-208111

Khosa, J. S., Lee, R., Bräuning, S., Lord, J., Pither-Joyce, M., McCallum, J., & Macknight, R. C. (2016). Doubled haploid 'CUDH2107' as a reference for bulb onion (Allium cepa L.) research: Development of a transcriptome catalogue and identification of transcripts associated with male fertility. PLoS ONE, 11(11), e0166568. doi: 10.1371/journal.pone.0166568

Kwakowsky, A., Potapov, K., Kim, S., Peppercorn, K., Tate, W. P., & Ábrahám, I. M. (2016). Treatment of beta amyloid 1-42 (Αβ_1-42)-induced basal forebrain cholinergic damage by a non-classical estrogen signaling activator in vivo. Scientific Reports, 6, 21101. doi: 10.1038/srep21101

Lawrence, S. A., & Poulin, R. (2016). Detection of the bacterial endosymbiont Neorickettsia in a New Zealand digenean. Parasitology Research, 115(11), 4275-4279. doi: 10.1007/s00436-016-5208-x

Lechtenberg, B. C., Rajput, A., Sanishvili, R., Dobaczewska, M. K., Ware, C. F., Mace, P. D., & Riedl, S. J. (2016). Structure of a HOIP/E2~ubiquitin complex reveals RBR E3 ligase mechanism and regulation. Nature, 529, 546-550. doi: 10.1038/nature16511

Lim, C. S., & Brown, C. M. (2016). Hepatitis B virus nuclear export elements: RNA stem-loop α and β, key parts of the HBV post-transcriptional regulatory element. RNA Biology, 13(9), 743-747. doi: 10.1080/15476286.2016.1166330

Logan, A., Pell, V. R., Shaffer, K. J., Evans, C., Stanley, N. J., Robb, E. L., … Porteous, C. M., … Smith, R. A. J., & Murphy, M. P. (2016). Assessing the mitochondrial membrane potential in cells and in vivo using targeted click chemistry and mass spectrometry. Cell Metabolism, 23, 379-385. doi: 10.1016/j.cmet.2015.11.014

Mann, K. M., Newberg, J. Y., Black, M. A., Jones, D. J., Amaya-Manzanares, F., Guzman-Rojas, L., … McNoe, L. A., Selvanesan, L., … Mann, M. B. (2016). Analyzing tumor heterogeneity and driver genes in single myeloid leukemia cells with SBCapSeq. Nature Biotechnology, 34(9), 962-972. doi: 10.1038/nbt.3637

Marshall, C. J., Basu, K., & Davies, P. L. (2016). Ice-shell purification of ice-binding proteins. Cryobiology, 72(3), 258-263. doi: 10.1016/j.cryobiol.2016.03.009

Marti, H.-P., Jeffs, A., Scherer, A., Leader, J., Leader, C., Bedford, J., & Walker, R. (2016). Renal fibrosis mRNA classifier: Validation in experimental lithium-induced interstitial fibrosis in the rat kidney. PLoS ONE, 11(12), e0168240. doi: 10.1371/journal.pone.0168240

Matisoo-Smith, E. A., Gosling, A. L., Boocock, J., Kardallsky, O., Kurumilian, Y., Roudesli-Chebbi, S., … Zalloua, P. A. (2016). A European mitochondrial haplotype identified in ancient Phoenician remains from Carthage, North Africa. PLoS ONE, 11(5), e0155046. doi: 10.1371/journal.pone.0155046

McRae, K. M., Baird, H. J., Dodds, K. G., Bixley, M. J., & Clarke, S. M. (2016). Incidence and heritability of ovine pneumonia, and the relationshipwith production traits in New Zealand sheep. Small Ruminant Research, 145, 136-141. doi: 10.1016/j.smallrumres.2016.11.003

Miller, L. D., Chou, J. A., Black, M. A., Print, C., Chifman, J., Alistar, A., … Marincola, F. M. (2016). Immunogenic subtypes of breast cancer delineated by gene classifiers of immune responsiveness. Cancer Immunology Research, 4(7). doi: 10.1158/2326-6066.cir-15-0149

Mitnala, S., Phipps-Green, A., Franklin, C., Horne, A., Stamp, L. K., Merriman, T. R., & Dalbeth, N. (2016). Clinical and genetic features of diuretic-associated gout: A case-control study. Rheumatology, 55(7), 1172-1176. doi: 10.1093/rheumatology/kew018

Morris, J. N., Eaton-Rye, J. J., & Summerfield, T. C. (2016). Environmental pH and the requirement for the extrinsic proteins of Photosystem II in the function of cyanobacterial photosynthesis. Frontiers in Plant Science, 7, 1135. doi: 10.3389/fpls.2016.01135

Muhsin-Sharafaldine, M.-R., Saunderson, S. C., Dunn, A. C., Faed, J. M., Kleffmann, T., & McLellan, A. D. (2016). Procoagulant and immunogenic properties of melanoma exosomes, microvesicles and apoptotic vesicles. Oncotarget, 7(35), 56279-56294. doi: 10.18632/oncotarget.10783

Najafpour, M. M., Renger, G., Holyńska, M., Moghaddam, A. N., Aro, E.-M., Carpentier, R., … Eaton-Rye, J. J., … Allakhverdiev, S. I. (2016). Manganese compounds as water-oxidizing catalysts: From the natural water-oxidizing complex to nanosized manganese oxide structures. Chemical Reviews, 116(5), 2886-2936. doi: 10.1021/acs.chemrev.5b00340

Nguyen, H. T., Boocock, J., Merriman, T. R., & Black, M. A. (2016). SRBreak: A read-depth and split-read framework to identify breakpoints of different events inside simple copy-number variable regions. Frontiers in Genetics, 7, 160. doi: 10.3389/fgene.2016.00160

Oliver, V. F., van Bysterveldt, K. A., Cadzow, M., Steger, B., Romano, V., Markie, D., … Vincent, A. L. (2016). A COL17A1 splice-altering mutation is prevalent in inherited recurrent corneal erosions. Ophthalmology, 123(4), 709-722. doi: 10.1016/j.ophtha.2015.12.008

Papetti, C., Windisch, H. S., La Mesa, M., Lucassen, M., Marshall, C., & Lamare, M. D. (2016). Non-Antarctic notothenioids: Past phylogenetic history and contemporary phylogeographic implications in the face of environmental changes. Marine Genomics, 25. doi: 10.1016/j.margen.2015.11.007

Phipps-Green, A. J., Merriman, M. E., Topless, R., Altaf, S., Montgomery, G. W., Franklin, C., Jones, G. T., van Rij, A. M., … Stamp, L. K., … Merriman, T. R. (2016). Twenty-eight loci that influence serum urate levels: Analysis of association with gout. Annals of the Rheumatic Diseases, 75, 124-130. doi: 10.1136/annrheumdis-2014-205877

Pilbrow, J., Bekhit, A. E.-D. A., & Carne, A. (2016). Fractionation of sheep cheese whey by a scalable method to sequentially isolate bioactive proteins. Food Chemistry, 203, 165-174. doi: 10.1016/j.foodchem.2016.02.065

Pires, C. V., de Paula Freitas, F. C., Cristino, A. S., Dearden, P. K., & Simões, Z. L. P. (2016). Transcriptome analysis of honeybee (Apis mellifera) haploid and diploid embryos reveals early zygotic transcription during cleavage. PLoS ONE, 11(1), e0146447. doi: 10.1371/journal.pone.0146447

Poen, S., Nakatani, Y., Opel-Reading, H. K., Lassé, M., Dobson, R. C. J., & Krause, K. L. (2016). Exploring the structure of glutamate racemase from Mycobacterium tuberculosis as a template for anti-mycobacterial drug discovery. Biochemical Journal, 473, 1267-1280. doi: 10.1042/bcj20160186

Rangel, R., Lee, S.-C., Ban, K. H.-K., Guzman-Rojas, L., Mann, M. B., Newberg, J. Y., … McNoe, L. A., Selvanesan, L., … Black, M. A., … Copeland, N. G. (2016). Transposon mutagenesis identifies genes that cooperate with mutant Pten in breast cancer progression. PNAS, 113(48), E7749-E7758. doi: 10.1073/pnas.1613859113

Rasheed, H., McKinney, C., Stamp, L. K., Dalbeth, N., Topless, R. K., Day, R., … Merriman, T. R. (2016). The toll-like receptor 4 (TLR4) variant rs2149356 and risk of gout in European and Polynesian sample sets. PLoS ONE, 11(1), e0147939. doi: 10.1371/journal.pone.0147939

Rasheed, H., Phipps-Green, A. J., Topless, R., Smith, M. D., Hill, C., Lester, S., … van Rij, A., Jones, G. T., McCormick, S. P., Harrison, A. A., Stamp, L. K., … Merriman, T. R. (2016). Replication of association of the apolipoprotein A1-C3-A4 gene cluster with the risk of gout. Rheumatology, 55(8), 1421-1430. doi: 10.1093/rheumatology/kew057

Read, H. M., Mills, G., Johnson, S., Tsai, P., Dalton, J., Barquist, L., … Patrick, W. M., & Wiles, S. (2016). The in vitro and in vivo effects of constitutive light expression on a bioluminescent strain of the mouse enteropathogen Citrobacter rodentium. PeerJ, 4, e2130. doi: 10.7717/peerj.2130

Ridge, S., Sussmilch, F. C., Hecht, V., Vander Schoor, J. K., Lee, R., Aubert, G., … Macknight, R. C., & Weller, J. L. (2016). Identification of LATE BLOOMER2 as a CYCLING DOF FACTOR homolog reveals conserved and divergent features of the flowering response to photoperiod in pea. Plant Cell, 28(10), 2545-2559. doi: 10.1105/tpc.15.01011

Robinson, P. C., Choi, H. K., Do, R., & Merriman, T. R. (2016). Insight into rheumatological cause and effect through the use of Mendelian randomization. Nature Reviews Rheumatology, 12, 486-496. doi: 10.1038/nrrheum.2016.102

Ryder, K., Bekhit, A. E.-D., McConnell, M., & Carne, A. (2016). Towards generation of bioactive peptides from meat industry waste proteins: Generation of peptides using commercial microbial proteases. Food Chemistry, 208, 42-50. doi: 10.1016/j.foodchem.2016.03.121

Salahudeen, M. S., Chyou, T.-y., & Nishtala, P. S. (2016). Serum anticholinergic activity and cognitive and functional adverse outcomes in older people: A systematic review and meta-analysis of the literature. PLoS ONE, 11(3), e0151084. doi: 10.1371/journal.pone.0151084

Schmoll, M., Dattenböck, C., Carreras-Villaseñor, N., Mendoza-Mendoza, A., Tisch, D., Alemán, M. I., … Brown, C., … Herrara-Estrella, A. (2016). The genomes of three uneven siblings: Footprints of the lifestyles of three Trichoderma species. Microbiology & Molecular Biology Reviews, 80(1), 205-327. doi: 10.1128/mmbr.00040-15

Schwinn, K. E., Ngo, H., Kenel, F., Brummell, D. A., Albert, N. W., McCallum, J. A., … Davies, K. M. (2016). The onion (Allium cepa L.) R2R3-MYB gene MYB1 regulates anthocyanin biosynthesis. Frontiers in Plant Science, 7, 1865. doi: 10.3389/fpls.2016.01865

Secker, N. H., Chua, J. P. S., Laurie, R. E., McNoe, L., Guy, P. L., Orlovich, D. A., & Summerfield, T. C. (2016). Characterization of the cyanobacteria and associated bacterial community from an ephemeral wetland in New Zealand. Journal of Phycology, 52(5), 761-773. doi: 10.1111/jpy.12434

Sharif, S., Nakatani, Y., Wise, L., Corbett, M., Real, N. C., Stuart, G. S., Lateef, Z., Krause, K., Mercer, A. A., & Fleming, S. B. (2016). A broad-spectrum chemokine-binding protein of bovine papular stomatitis virus inhibits neutrophil and monocyte infiltration in inflammatory and wound models of mouse skin. PLoS ONE, 11(12), e0168007. doi: 10.1371/journal.pone.0168007

Sharma, M., Tuaine, J., McLaren, B., Waters, D. L., Black, K., Jones, L. M., & McCormick, S. P. A. (2016). Chemotherapy agents alter plasma lipids in breast cancer patients and show differential effects on lipid metabolism genes in liver cells. PLoS ONE, 11(1), e0148049. doi: 10.1371/journal.pone.0148049

Sizemore, R. J., Seeger-Armbruster, S., Hughes, S. M., & Parr-Brownlie, L. C. (2016). Viral vector-based tools advance knowledge of basal ganglia anatomy and physiology. Journal of Neurophysiology, 115, 2124-2146. doi: 10.1152/jn.01131.2015

Smith, L. M., Parr-Brownlie, L. C., Duncan, E. J., Black, M. A., Gemmell, N. J., Dearden, P. K., & Reynolds, J. N. J. (2016). Striatal mRNA expression patterns underlying peak dose L-DOPA-induced dyskinesia in the 6-OHDA hemiparkinsonian rat. Neuroscience, 324, 238-251. doi: 10.1016/j.neuroscience.2016.03.012

Soo, V. W. C., Yosaatmadja, Y., Squire, C. J., & Patrick, W. M. (2016). Mechanistic and evolutionary insights from the reciprocal promiscuity of two pyridoxal phosphate-dependent enzymes. Journal of Biological Chemistry, 291(38), 19873-19887. doi: 10.1074/jbc.M116.739557

Sowerby, S. J., Crump, J. A., Johnstone, M. C., Krause, K. L., & Hill, P. C. (2016). Smartphone microscopy of parasite eggs accumulated into a single field of view. American Journal of Tropical Medicine & Hygiene, 94(1), 227-230. doi: 10.4269/ajtmh.15-0427

Staals, R. H. J., Jackson, S. A., Biswas, A., Brouns, S. J. J., Brown, C. M., & Fineran, P. C. (2016). Interference-driven spacer acquisition is dominant over naive and primed adaptation in a native CRISPR–Cas system. Nature Communications, 7, 12853. doi: 10.1038/ncomms12853

Tantirigama, M. L. S., Oswald, M. J., Clare, A. J., Wicky, H. E., Day, R. C., Hughes, S. M., & Empson, R. M. (2016). Fezf2 expression in layer 5 projection neurons of mature mouse motor cortex. Journal of Comparative Neurology, 524(4), 829-845. doi: 10.1002/cne.23875

Taylor, E. S., McCall, J. L., Girardin, A., Munro, F. M., Black, M. A., & Kemp, R. A. (2016). Functional impairment of infiltrating T cells in human colorectal cancer. OncoImmunology, 5(11), e1234573. doi: 10.1080/2162402X.2016.1234573

Tchesnokov, E. P., Faponle, A. S., Davies, C. G., Quesne, M. G., Turner, R., Fellner, M., Souness, R. J., Wilbanks, S. M., … Jameson, G. N. L. (2016). An iron–oxygen intermediate formed during the catalytic cycle of cysteine dioxygenase. Chemical Communications, 52, 8814-8817. doi: 10.1039/c6cc03904a

Teh, S.-S., Bekhit, A. E.-D. A., Carne, A., & Birch, J. (2016). Antioxidant and ACE-inhibitory activities of hemp (Cannabis sativa L.) protein hydrolysates produced by the proteases AFP, HT, Pro-G, actinidin and zingibain. Food Chemistry, 203, 199-206. doi: 10.1016/j.foodchem.2016.02.057

Todd, E. V., Black, M. A., & Gemmell, N. J. (2016). The power and promise of RNA-seq in ecology and evolution. Molecular Ecology, 25(6), 1224-1241. doi: 10.1111/mec.13526

Tong, M., Kleffmann, T., Pradhan, S., Johansson, C. L., DeSousa, J., Stone, P. R., … Chamley, L. W. (2016). Proteomic characterization of macro-, micro- and nano-extracellular vesicles derived from the same first trimester placenta: Relevance for feto-maternal communication. Human Reproduction, 31(4), 687-699. doi: 10.1093/humrep/dew004

van 't Hof, F. N. G., Ruigrok, Y. M., Lee, C. H., Ripke, S., Anderson, G., de Andrade, M., … Jones, G. T., … van Rij, A. M., … Vascular Research Consortium of New Zealand, including Phillips, L. V., Hill, G. B., Williams, M. J. A., Thomson, I. A., Krysa, J., Wilkins, G. T., Merriman, T. R., Lewis, D. R., … de Bakker, P. I. W. (2016). Shared genetic risk factors of intracranial, abdominal, and thoracic aneurysms. Journal of the American Heart Association, 5(7), e002603. doi: 10.1161/jaha.115.002603

Ventura, R. V., Miller, S. P., Dobbs, K. G., Auvray, B., Lee, M., Bixley, M., Clarke, S. M., & McEwan, J. C. (2016). Assessing accuracy of imputation using different SNP panel densities in a multi-breed sheep population. Genetics Selection & Evolution, 48, 71. doi: 10.1186/s12711-016-0244-7

Walker, G. V., Heng, N. C. K., Carne, A., Tagg, J. R., & Wescombe, P. A. (2016). Salivaricin E and abundant dextranase activity may contribute to the anti-cariogenic potential of the probiotic candidate Streptococcus salivarius JH. Microbiology, 162(3), 476-486. doi: 10.1099/mic.0.000237

Wei, J., Lau, S. Y., Blenkiron, C., Chen, Q., James, J. L., Kleffmann, T., … Chamley, L. W. (2016). Trophoblastic debris modifies endothelial cell transcriptome in vitro: A mechanism by which fetal cells might control maternal responses to pregnancy. Scientific Reports, 6, 30632. doi: 10.1038/srep30632

Wiggins, G., & Legge, M. (2016). Cyclic variation of cellular clock proteins in the mouse estrous ovary. Journal of Reproduction & Infertility, 17(4), 192-198.

Wilkinson, M. E., Nakatani, Y., Staals, R. H. J., Kieper, S. N., Opel-Reading, H. K., McKenzie, R. E., Fineran, P. C., & Krause, K. L. (2016). Structural plasticity and in vivo activity of Cas1 from the type I-F CRISPR-Cas system. Biochemical Journal, 473, 1063-1072. doi: 10.1042/bcj20160078

Wright, D. F. B., Duffull, S. B., Merriman, T. R., Dalbeth, N., Barclay, M. L., & Stamp, L. K. (2016). Predicting allopurinol response in patients with gout. British Journal of Clinical Pharmacology, 81(2), 277-289. doi: 10.1111/bcp.12799

Wright, J. D., Mace, P. D., & Day, C. L. (2016). Noncovalent ubiquitin interactions regulate the catalytic activity of ubiquitin writers. Trends in Biochemical Sciences, 41(11), 924-937. doi: 10.1016/j.tibs.2016.08.003

Wright, J. D., Mace, P. D., & Day, C. L. (2016). Secondary ubiquitin-RING docking enhances Arkadia and Ark2C E3 ligase activity. Nature Structural & Molecular Biology, 23(1), 45-52. doi: 10.1038/nsmb.3142

Ahmadi, O., Stringer, M. D., Black, M. A., & McCall, J. L. (2015). Clinico-pathological factors influencing lymph node yield in colorectal cancer and impact on survival: Analysis of New Zealand Cancer Registry data. Journal of Surgical Oncology, 11(4), 451-458. doi: 10.1002/jso.23848

Bah, C. S. F., Bekhit, A. E.-D. A., Carne, A., & McConnell, M. A. (2015). Production of bioactive peptide hydrolysates from deer, sheep and pig plasma using plant and fungal protease preparations. Food Chemistry, 176, 54-63. doi: 10.1016/j.foodchem.2014.12.025

Bao, Y., Curhan, G., Merriman, T., Plenge, R., Kraft, P., & Choi, H. K. (2015). Lack of gene—diuretic interactions on the risk of incident gout: The Nurses' Health Study and Health Professionals Follow-up Study. Annals of the Rheumatic Diseases, 74, 1394-1398. doi: 10.1136/annrheumdis-2014-206534

Boase, M. R., Brendolise, C., Wang, L., Ngo, H., Espley, R. V., Hellens, R. P., … Albert, N. W. (2015). Failure to launch: The self-regulating Md-MYB10_R6 gene from apple is active in flowers but not leaves of Petunia. Plant Cell Reports, 34(10), 1817-1823. doi: 10.1007/s00299-015-1827-4

Bond, D. M., & Baulcombe, D. C. (2015). Epigenetic transitions leading to heritable, RNA-mediated de novo silencing in Arabidopsis thaliana. PNAS, 112(3), 917-922. doi: 10.1073/pnas.1413053112

Boocock, J., Chagné, D., Merriman, T. R., & Black, M. A. (2015). The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh. BMC Genomics, 16(1), 848. doi: 10.1186/s12864-015-2096-x

Brownfield, L., Yi, J., Jiang, H., Minina, E. A., Twell, D., & Köhler, C. (2015). Organelles maintain spindle position in plant meiosis. Nature Communications, 6, 6492. doi: 10.1038/ncomms7492

Budhidarmo, R., & Day, C. L. (2015). IAPs: Modular regulators of cell signalling. Seminars in Cell & Developmental Biology, 39, 80-90. doi: 10.1016/j.semcdb.2014.12.002

Cahyani, I., Cridge, A. G., Engelke, D. R., Ganley, A. R. D., & O'Sullivan, J. M. (2015). A sequence-specific interaction between the Saccharomyces cerevisiae rRNA gene repeats and a locus encoding an RNA polymerase I subunit affects ribosomal DNA stability. Molecular & Cellular Biology, 35(3), 544-554. doi: 10.1128/mcb.01249-14

Cardno, T. S., Shimaki, Y., Sleebs, B. E., Lackovic, K., Parisot, J. P., Moss, R. M., Crowe-McAuliffe, C., Mathew, S. F., Edgar, C. D., Kleffmann, T., & Tate, W. P. (2015). HIV-1 and human PEG10 frameshift elements are functionally distinct and distinguished by novel small molecule modulators. PLoS ONE, 10(10), e0139036. doi: 10.1371/journal.pone.0139036

Chambers, C. R., & Patrick, W. M. (2015). Archaeal nucleic acid ligases and their potential in biotechnology. Archaea, 2015, 170571. doi: 10.1155/2015/170571

Chatterjee, A., Stockwell, P. A., Rodger, E. J., Duncan, E. J., Parry, M. F., Weeks, R. J., & Morison, I. M. (2015). Genome-wide DNA methylation map of human neutrophils reveals widespread inter-individual epigenetic variation. Scientific Reports, 5, 17328. doi: 10.1038/srep17328

Ciarroni, S., Gallipoli, L., Taratufolo, M. C., Butler, M. I., Poulter, R. T., Pourcel, C., … Mazzaglia, A. (2015). Development of a Multiple Loci Variable number of tandem repeats Analysis (MLVA) to unravel the intra-pathovar structure of Pseudomonas syringae pv. actinidiae populations worldwide. PLoS ONE, 10(8), e0135310. doi: 10.1371/journal.pone.0135310

Cooke, I. R., Laing, C. J., White, L. V., Wakes, S. J., & Sowerby, S. J. (2015). Analysis of menisci formed on cones for single field of view parasite egg microscopy. Journal of Microscopy, 257(2), 133-141. doi: 10.1111/jmi.12192

Couñago, R. M., Knapp, K. M., Nakatani, Y., Fleming, S. B., Corbett, M., Wise, L. M., Mercer, A. A., & Krause, K. L. (2015). Structures of orf virus chemokine binding protein in complex with host chemokines reveal clues to broad binding specificity. Structure, 23(7), 1199-1213. doi: 10.1016/j.str.2015.04.023

Cridge, A. G., Leask, M. P., Duncan, E. J., & Dearden, P. K. (2015). What do studies of insect polyphenisms tell us about nutritionally-triggered epigenomic changes and their consequences? Nutrients, 7(3), 1787-1797. doi: 10.3390/nu7031787

Cridge, B. J., & Cridge, A. G. (2015). Evaluating how universities engage school students with science: A model based on the analysis of the literature. Australian Universities' Review, 57(1), 34-44.

Dalbeth, N., Phipps-Green, A., House, M. E., Gamble, G. D., Horne, A., Stamp, L. K., & Merriman, T. R. (2015). Body mass index modulates the relationship of sugar-sweetened beverage intake with serum urate concentrations and gout. Arthritis Research & Therapy, 17(1), 263. doi: 10.1186/s13075-015-0781-4

Dalbeth, N., Topless, R., Flynn, T., Cadzow, M., Bolland, M. J., & Merriman, T. R. (2015). Mendelian randomization analysis to examine for a causal effect of urate on bone mineral density. Journal of Bone & Mineral Research, 30(6), 985-991. doi: 10.1002/jbmr.2434

Damsteegt, E. L., Falahatimarvast, A., McCormick, S. P. A., & Lokman, P. M. (2015). Triacylglyceride physiology in the short-finned eel, Anguilla australis: Changes throughout early oogenesis. American Journal of Physiology: Regulatory, Integrative & Comparative Physiology, 308(11), R935-R944. doi: 10.1152/ajpregu.00436.2014

Davies, C., Brown, C. M., Westphal, D., Ward, J. M., & Ward, V. K. (2015). Murine norovirus replication induces a G₀/G₁ cell cycle arrest in asynchronous growing cells. Journal of Virology, 89(11), 6057-6066. doi: 10.1128/jvi.03673-14

Dearden, P. K. (2015). Origin and evolution of the enhancer of split complex. BMC Genomics, 16, 712. doi: 10.1186/s12864-015-1926-1

Doecke, J. D., Simms, L. A., Zhao, Z. Z., Roberts, R. L., Fowler, E. V., Croft, A., … Barclay, M. L., Merriman, T. R., Gearry, R. B., … Radford-Smith, G. L. (2015). Smoking behaviour modifies IL23r-associated disease risk in patients with Crohn's disease. Journal of Gastroenterology & Hepatology, 30(2), 299-307. doi: 10.1111/jgh.12674

Donaldson, A. E., & Lamont, I. L. (2015). Metabolomics of post-mortem blood: Identifying potential markers of post-mortem interval. Metabolomics, 11(1), 237-245. doi: 10.1007/s11306-014-0691-5

Dupont, P.-Y., Eaton, C. J., Wargent, J. J., Fechtner, S., Solomon, P., Schmid, J., Day, R. C., … Cox, M. P. (2015). Fungal endophyte infection of ryegrass reprograms host metabolism and alters development. New Phytologist, 208(4), 1227-1240. doi: 10.1111/nph.13614

Ellisdon, A. M., Reboul, C. F., Panjikar, S., Huynh, K., Oelling, C. A., Winter, K. L., … Dearden, P. K., … McGowan, S. (2015). Stonefish toxin defines an ancient branch of the perforin-like superfamily. PNAS, 112(50), 15360-15365. doi: 10.1073/pnas.1507622112

Fitzgerald, R. P., Legge, M., & Park, J. (2015). Choice, rights and virtue: Prenatal testing and styles of moral reasoning in Aotearoa/New Zealand. Medical Anthropology Quarterly, 29(3), 400-417. doi: 10.1111/maq.12217

Flynn, T. J., Cadzow, M., Dalbeth, N., Jones, P. B., Stamp, L. K., Harré Hindmarsh, J., Todd, A. S., Walker, R. J., Topless, R., & Merriman, T. R. (2015). Positive association of tomato consumption with serum urate: Support for tomato consumption as an anecdotal trigger of gout flares. BMC Musculoskeletal Disorders, 16, 196. doi: 10.1186/s12891-015-0661-8

Frampton, R. A., Lopez Acedo, E., Young, V. L., Chen, D., Tong, B., Taylor, C., Easingwood, R. A., … Kleffmann, T., Bostina, M., & Fineran, P. C. (2015). Genome, proteome and structure of a T7-like bacteriophage of the kiwifruit canker phytopathogen Pseudomonas syringae pv. actinidiae. Viruses, 7(7), 3361-3379. doi: 10.3390/v7072776

Freschi, L., Jeukens, J., Kukavica-Ibrulj, I., Boyle, B., Dupont, M.-J., LaRoche, J., … Lamont, I. L., … Levesque, R. C. (2015). Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium. Frontiers in Microbiology, 6, 1036. doi: 10.3389/fmicb.2015.01036

Gosling, A. L., Buckley, H. R., Matisoo-Smith, E., & Merriman, T. R. (2015). Pacific populations, metabolic disease and 'just-so stories': A critique of the 'Thrifty Genotype' hypothesis in Oceania. Annals of Human Genetics, 79(6), 470-480. doi: 10.1111/ahg.12132

Grueber, C. E., Knafler, G. J., King, T. M., Senior, A. M., Grosser, S., Robertson, B., Weston, K. A., … Harris, C. L. W., & Jamieson, I. G. (2015). Toll-like receptor diversity in 10 threatened bird species: Relationship with microsatellite heterozygosity. Conservation Genetics, 16(3), 595-611. doi: 10.1007/s10592-014-0685-x

Guy, P. L., Easingwood, R., Carne, D. L., & Kleffmann, T. (2015). Identification of two plant viruses using partial purification and mass spectrometry. Australasian Plant Disease Notes, 10, 11. doi: 10.1007/s13314-015-0162-5

Ha, M., Sabherwal, M., Duncan, E., Stevens, S., Stockwell, P., McConnell, M., Bekhit, A. E.-D., & Carne, A. (2015). In-depth characterization of sheep (Ovis aries) milk whey proteome and comparison with cow (Bos taurus). PLoS ONE, 10(10), e0139774. doi: 10.1371/journal.pone.0139774

Hansford, S., Kaurah, P., Li-Chang, H., Woo, M., Senz, J., Pinheiro, H., … Guilford, P., … Huntsman, D. G. (2015). Hereditary diffuse gastric cancer syndrome: CDH1 mutations and beyond. JAMA Oncology, 1(1), 23-32. doi: 10.1001/jamaoncol.2014.168

Huffman, J. E., Albrecht, E., Teumer, A., Mangino, M., Kapur, K., Johnson, T., … Phipps-Green, A., … Stamp, L., & . . . (2015). Modulation of genetic associations with serum urate levels by body-mass-index in humans. PLoS ONE, 10(3), e0119752. doi: 10.1371/journal.pone.0119752

Jackson, S. A., & Eaton-Rye, J. J. (2015). Characterization of a Synechocystis sp. PCC 6803 double mutant lacking the CyanoP and Ycf48 proteins of Photosystem II. Photosynthesis Research, 124, 217-229. doi: 10.1007/s11120-015-0122-0

Jackson, S. A., Eaton-Rye, J. J., Bryant, D. A., Posewitz, M. C., & Davies, F. K. (2015). Dynamics of photosynthesis in the glycogen-deficient glgC mutant of Synechococcus sp. PCC 7002. Applied & Environmental Microbiology, 81(18), 6210-6222. doi: 10.1128/aem.01751-15

Johnson, R. J., Merriman, T., & Lanaspa, M. A. (2015). Causal or noncausal relationship of uric acid with diabetes. Diabetes, 64(8), 2720-2722. doi: 10.2337/db15-0532

Josephs, T. M., Hibbs, M. E., Ong, L., Morison, I. M., & Ledgerwood, E. C. (2015). Interspecies variation in the functional consequences of mutation of cytochrome c. PLoS ONE, 10(6), e0130292. doi: 10.1371/journal.pone.0130292

Kasparova, E., Van de Putte, A. P., Marshall, C., & Janko, K. (2015). Lifestyle and ice: The relationship between ecological specialization and response to Pleistocene climate change. PLoS ONE, 10(11), e0138766. doi: 10.1371/journal.pone.0138766

Khosa, J. S., McCallum, J., Dhatt, A. S., & MacKnight, R. C. (2015). Enhancing onion breeding using molecular tools. Plant Breeding, 9-20. doi: 10.1111/pbr.12330

Kienhorst, L. B. E., van Lochem, E., Kievit, W., Dalbeth, N., Merriman, M. E., Phipps-Green, A., … Stamp, L. K., … Merriman, T. R., … Radstake, T. R. D. J. (2015). Gout is a chronic inflammatory disease in which high levels of interleukin 8 (CXCL8), myeloid-related protein 8/myeloid-related protein14 complex, and an altered proteome are associated with diabetes mellitus and cardiovascular disease. Arthritis & Rheumatology, 67(12), 3303-3313. doi: 10.1002/art.39318

Kohn, Y. Y., Symonds, J. E., Kleffmann, T., Nakagawa, S., Lagisz, M., & Lokman, P. M. (2015). Proteomic analysis of early-stage embryos: Implications for egg quality in hapuku (Polyprion oxygeneios). Fish Physiology & Biochemistry, 41(6), 1403-1417. doi: 10.1007/s10695-015-0095-0

Kuchenbaecker, K. B., Ramus, S. J., Tyrer, J., Lee, A., Shen, H. C., Beesley, J., … kConFab, including George, P., Kidd, A., Reeve, T., Robinson, B., Walker, L., … for the Consortium of Investigators of Modifiers of BRCA1 and BRCA2. (2015). Identification of six new susceptibility loci for invasive epithelial ovarian cancer. Nature Genetics, 47(2), 164-171. doi: 10.1038/ng.3185

Laing, W. A., Martínez-Sánchez, M., Wright, M. A., Bulley, S. M., Brewster, D., Dare, A. P., … Macknight, R. C., & Hellens, R. P. (2015). An upstream open reading frame Is essential for feedback regulation of ascorbate biosynthesis in Arabidopsis. Plant Cell, 27(3), 772-786. doi: 10.1105/tpc.114.133777

Lee, A. C. C., Quaiyum, M. A., Mullany, L. C., Mitra, D. K., Labrique, A., Ahmed, P., … for the Projahnmo Study Group, including Mortuza, R. (2015). Screening and treatment of maternal geniturinary tract infections in early pregnancy to prevent preterm birth in rural Sylhet, Bangladesh: A cluster randomized trial. BMC Pregnancy & Childbirth, 15, 326. doi: 10.1186/s12884-015-0724-8

Li, Y., Telfer, E., & Wilcox, P. L. (2015). New Zealand forestry enters the genomics era: Applications of genomics in tree breeding. New Zealand Journal of Forestry, 60(1), 23-25.

Liu, H., Lamm, M. S., Rutherford, K., Black, M. A., Godwin, J. R., & Gemmell, N. J. (2015). Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish. Biology of Sex Differences, 6, 26. doi: 10.1186/s13293-015-0044-8

López-Knowles, E., Wilkerson, P. M., Ribas, R., Anderson, H., Mackay, A., Ghazoui, Z., … Dunbier, A. K., … Dowsett, M. (2015). Integrative analyses identify modulators of response to neoadjuvant aromatase inhibitors in patients with early breast cancer. Breast Cancer Research, 17, 35. doi: 10.1186/s13058-015-0532-0

Lopez-Medina, E., Fan, D., Coughlin, L. A., Ho, E. X., Lamont, I. L., Reimmann, C., … Koh, A. Y. (2015). Candida albicans inhibits Pseudomonas aeruginosa virulence through suppression of pyochelin and pyoverdine biosynthesis. PLoS Pathogens, 11(8), e1005129. doi: 10.1371/journal.ppat.1005129

Maddock, D. J., Patrick, W. M., & Gerth, M. L. (2015). Substitutions at the cofactor phosphate-binding site of a clostridial alcohol dehydrogenase lead to unexpected changes in substrate specificity. Protein Engineering, Design & Selection, 28(8), 251-258. doi: 10.1093/protein/gzv028

Mann, M. B., Black, M. A., Jones, D. J., Ward, J. M., Yew, C. C. K., Newberg, J. Y., … Jenkins, N. A. (2015). Transposon mutagenesis identifies genetic drivers of Braf^V600E melanoma. Nature Genetics, 47(5), 486-495. doi: 10.1038/ng.3275

Marshall, C. W., Chagné, D., Deusch, O., Gruenheit, N., McCallum, J., Bergin, D., … Wilcox, P. L. (2015). A DNA-based diagnostic for differentiating among New Zealand endemic Podocarpus. Tree Genetics & Genomes, 11, 69. doi: 10.1007/s11295-015-0888-4

Mathew, S. F., Crowe-McAuliffe, C., Graves, R., Cardno, T. S., McKinney, C., Poole, E. S., & Tate, W. P. (2015). The highly conserved codon following the Slippery Sequence Supports -1 frameshift efficiency at the HIV-1 frameshift site. PLoS ONE, 10(3), e0122176. doi: 10.1371/journal.pone.0122176

McKellar, J. L. O., Minnell, J. J., & Gerth, M. L. (2015). A high-throughput screen for ligand binding reveals the specificities of three amino acid chemoreceptors from Pseudomonas syringae pv. actinidiae. Molecular Microbiology, 96(4), 694-707. doi: 10.1111/mmi.12964

McKinney, C., Stamp, L. K., Dalbeth, N., Topless, R. K., Day, R. O., Kannangara, D. R. W., … Merriman, T. R. (2015). Multiplicative interaction of functional inflammasome genetic variants in determining the risk of gout. Arthritis Research & Therapy, 17, 288. doi: 10.1186/s13075-015-0802-3

Merriman, T. R. (2015). An update on the genetic architecture of hyperuricemia and gout. Arthritis Research & Therapy, 17, 98. doi: 10.1186/s13075-015-0609-2

Michailidou, K., Beesley, J., Lindstrom, S., Canisius, S., Dennis, J., Lush, M. J., … kConFab, including George, P., Kidd, A., Reeve, T., Robinson, B., Walker, L., … Easton, D. F. (2015). Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer. Nature Geoscience, 47, 373-380. doi: 10.1038/ng.3242

Middleton, A. J., & Day, C. L. (2015). The molecular basis of lysine 48 ubiquitin chain synthesis by Ube2K. Scientific Reports, 5, 16793. doi: 10.1038/srep16793

Other publications:

Books, book chapters, patents, etc

Are you looking for...

Are you looking for...

Are you looking for...

Are you looking for...

Are you looking for...

Are you looking for...

Are you looking for...

Edited Book - Research

Chapter in Book - Research

Chapter in Book - Other

Journal - Research Article

Other publications:

Was this page useful?