Edited Book - Research
Tate, W. P., & Peppercorn, K. (Eds.). (2025). Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS): Methods and protocols: Methods in molecular biology (Vol. 2920). New York, NY: Humana Press. doi: 10.1007/978-1-0716-4498-0
Eaton-Rye, J. J., Tripathy, B. C., & Sharkey, T. D. (Eds.). (2012). Photosynthesis: Plastid biology, energy conversion and carbon assimilation. New York: Springer, 856p. doi: 10.1007/978-94-007-1579-0
Chapter in Book - Research
Edgar, C. D., Blair, A., & Tate, W. P. (2025). Measurement of genetic variations in ME/CFS patients in the IDO2 gene encoding an enzyme metabolizing tryptophan. In W. P. Tate & K. Peppercorn (Eds.), Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS): Methods and protocols: Methods in molecular biology (Vol. 2920). (pp. 247-256). New York, NY: Humana Press. doi: 10.1007/978-1-0716-4498-0_14
Kumar, A., Peppercorn, K., & Kleffmann, T. (2025). Quantitative proteomics on immune cells of ME/CFS patients using SWATH-MS. In W. P. Tate & K. Peppercorn (Eds.), Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS): Methods and protocols: Methods in molecular biology (Vol. 2920). (pp. 113-140). New York, NY: Humana Press. doi: 10.1007/978-1-0716-4498-0_8
Peppercorn, K., Edgar, C. D., Al Momani, S., Rodger, E. J., Tate, W. P., & Chatterjee, A. (2025). Application of DNA methylome analysis to patients with ME/CFS. In W. P. Tate & K. Peppercorn (Eds.), Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS): Methods and protocols: Methods in molecular biology (Vol. 2920). (pp. 141-160). New York, NY: Humana Press. doi: 10.1007/978-1-0716-4498-0_9
Morris, J., Liddy, M., & Marshall, C. J. (2024). Ice shell purification of ice-active compounds. In R. Drori & C. A. Stevens (Eds.), Ice binding proteins: Methods and protocols: Methods in molecular biology (Vol. 2730). (pp. 25-34). New York, NY: Humana Press. doi: 10.1007/978-1-0716-3503-2_2
Decourtye-Espiard, L., & Guilford, P. (2023). The chemoprevention of hereditary diffuse gastric cancer. In G. Corso, P. Veronesi & F. Roviello (Eds.), Hereditary gastric and breast cancer syndrome: CDH1: One genotype with multiple phenotypes. (pp. 321-341). Cham, Switzerland: Springer. doi: 10.1007/978-3-031-21317-5_21
Diermeier, S. D., & Leask, M. P. (2023). History and definitions of ncRNAs. In J. Sztuba-Solinska (Ed.), Navigating non-coding RNA: From biogenesis to therapeutic application. (pp. 1-46). London, UK: Academic Press. doi: 10.1016/B978-0-323-90406-3.00002-6
Kavle, R. R., Pritchard, E., Bekhit, A. E.-D. A., Carne, A., & Agyei, D. (2023). Nutrient content and functionalities of edible insects. In S. Grasso & M. Bordiga (Eds.), Edible insects processing for food and feed: From startups to mass production. (pp. 53-84). Boca Raton, FL: CRC Press. doi: 10.1201/9781003165729-4
Nolan, P., Mahmoud, A. E., Kavle, R. R., Carne, A., Bekhit, A. E.-D. A., & Agyei, D. (2023). Edible insects: Protein composition, digestibility, and biofunctionalities. In Z. F. Bhat, J. D. Morton, A. E.-D. A. Bekhit & H. A. R. Suleria (Eds.), Processing technologies and food protein digestion. (pp. 429-494). London, UK: Academic Press. doi: 10.1016/B978-0-323-95052-7.00020-0
Torbati, E., Stuart, G., Krause, K., Brown, C., & Wise, L. (2023). Methods to assess chemokine binding and anti-chemotactic activity of virus proteins. In A. R. Lucas (Ed.), Chemokine-glycosaminoglycan interactions: Methods and protocols: Methods in molecular biology (Vol. 2597). (pp. 217-234). New York, N Y: Humana Press. doi: 10.1007/978-1-0716-2835-5_16
Ahmed, I. A. M., Al-Juhaimi, F. Y., Bhat, Z. F., Carne, A., & Bekhit, A. E.-D. (2022). Non-traditional meat sources, production, nutritional and health aspects, consideration of safety aspects and religious views. In A. E.-D. A. Bekhit, W. W. Riley & M. A. Hussain (Eds.), Alternative proteins: Safety and food security considerations. (pp. 215-270). Boca Raton, FL: CRC Press. doi: 10.1201/9780429299834-8
Ahmmed, M. K., Ahmmed, F., Carne, A., Tian, H. S., & Bekhit, A. E.-D. A. (2022). Fish roe phospholipids and health: Composition, extraction, storage and brain health application. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 93-142). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00005-9
Amin, H. F., Carne, A., & Bekhit, A. E.-D. A. (2022). Fish roe products: Middle East perspective. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 283-310). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00010-2
Bekhit, A. E.-D. A., Ahmmed, M. K., Sicuro, B., Ghelichi, S., & Carne, A. (2022). Fish roe products: European perspective. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 311-341). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00012-6
Bunga, S., Carne, A., & Bekhit, A. E.-D. A. (2022). Composition and nutrition of fish roes. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 41-92). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00011-4
Irvani, N., Carne, A., Agyei, D., & Oey, I. (2022). Algae as an alternative source of protein. In A. E.-D. A. Bekhit, W. W. Riley & M. A. Hussain (Eds.), Alternative proteins: Safety and food security considerations. (pp. 65-84). Boca Raton, FL: CRC Press. doi: 10.1201/9780429299834-4
Jamieson, S. A., McMillan, H. D., & Mace, P. D. (2022). Structural and biophysical characterization of Tribbles homolog 1. In A. M. Pyle & D. W. Christianson (Eds.), Methods in enzymology (Vol. 667). (pp. 37-58). Cambridge, MA: Elsevier. doi: 10.1016/bs.mie.2022.03.023
Marsman, J., Day, R. C., & Gimenez, G. (2022). Circular chromosome conformation capture sequencing (4C-Seq ) in primary adherent cells. In J. Horsfield & J. Marsman (Eds.), Chromatin: Methods and protocols: Methods in molecular biology (Vol. 2458). (pp. 301-320). New York, NY: Springer. doi: 10.1007/978-1-0716-2140-0_16
Sarkar, D., & Diermeier, S. D. (2022). LncRNA-chromatin pull-down using biotin-conjugated DNA probes. In J. Horsfield & J. Marsman (Eds.), Chromatin: Methods and protocols: Methods in molecular biology (Vol. 2458). (pp. 345-357). New York, NY: Springer. doi: 10.1007/978-1-0716-2140-0_19
Smith, A. M., Batson, P. B., Achilleos, K., & Tamberg, Y. (2022). Collecting and culturing bryozoans for regenerative studies. In S. Blanchoud & B. Galliot (Eds.), Whole-body regeneration: Methods and protocols: Methods in molecular biology (Vol. 2450). (pp. 151-177). New York, NY: Springer. doi: 10.1007/978-1-0716-2172-1_8
Smith, J., Day, R. C., & Weeks, R. J. (2022). Next-generation bisulfite sequencing for targeted DNA methylation analysis. In J. Horsfield & J. Marsman (Eds.), Chromatin: Methods and protocols: Methods in molecular biology (Vol. 2458). (pp. 47-62). New York, NY: Springer. doi: 10.1007/978-1-0716-2140-0_3
Sollitto, M., Kenny, N. J., Greco, S., Tucci, C. F., Calcino, A. D., & Gerdol, M. (2022). Detecting structural variants and associated gene presence-absence variation phenomena in the genomes of marine organisms. In C. Verde & D. Giordano (Eds.), Marine genomics: Methods and protocols: Methods in molecular biology (Vol. 2498). (pp. 53-76). New York, NY: Springer. doi: 10.1007/978-1-0716-2313-8_4
Tantamacharik, T., Carne, A., Shavandi, A., & Bekhit, A. E.-D. A. (2022). Keratin as an alternative protein in food and nutrition. In A. E.-D. A. Bekhit, W. W. Riley & M. A. Hussain (Eds.), Alternative proteins: Safety and food security considerations. (pp. 173-214). Boca Raton, FL: CRC Press. doi: 10.1201/9780429299834-7
Verachia, W., Bekhit, A. E.-D. A., Carne, A., & Bekhit, A. A. (2022). Fish roe from sea urchin: Composition, processing, and quality aspects. In A. E.-D. A. Bekhit (Ed.), Fish roe: Biochemistry, products, and safety. (pp. 143-181). London, UK: Academic Press. doi: 10.1016/B978-0-12-819893-3.00002-3
Brinkman, F. S. L., Winson, G. L., Done, R. E., Filloux, A., Francis, V. I., Goldberg, J. B., … Lamont, I. L., … Welch, M. (2021). The Pseudomonas aeruginosa whole genome sequence: A 20th anniversary celebration. In R. K. Poole & D. J. Kelly (Eds.), Advances in microbial physiology. (pp. 25-88). London, UK: Elsevier. doi: 10.1016/bs.ampbs.2021.07.001
Gullo, I., Oliveira, C., van der Post, R. S., van Dieren, J. M., Davis, J. L., Bougen-Zhukov, N., Guilford, P., & Carneiro, F. (2021). Updated perspective and directions on hereditary diffuse gastric cancer. In B. Jenkins (Ed.), Research and clinical applications of targeting gastric neoplasms. (pp. 217-258). London, UK: Elsevier. doi: 10.1016/B978-0-323-85563-1.00011-3
Bredow, M., Tomalty, H. E., Graham, L. A., Gruneberg, A. K., Middleton, A. J., Vanderbeld, B., … Walker, V. K. (2020). Isolation and characterization of ice-binding proteins from higher plants. In D. K. Hincha & E. Zuther (Eds.), Plant cold acclimation: Methods and protocols: Methods in molecular biology (Vol. 2156). (2nd ed.) (pp. 303-332). New York, NY: Humana Press. doi: 10.1007/978-1-0716-0660-5_21
Cridge, A. G., Dearden, P. K., & Brownfield, L. R. (2019). The developmental hourglass in the evolution of embryogenesis. In L. N. de la Rosa & G. Müller (Eds.), Evolutionary developmental biology: A reference guide. Cham, Switzerland: Springer. doi: 10.1007/978-3-319-33038-9
Dearden, P. K. (2019). Hourglass or twisted ribbon? In W. Tworzydlo & S. M. Bilinski (Eds.), Evo-Devo: Non-model species in cell developmental biology: Results and problems in cell differentiation. (pp. 21-29). Cham, Switzerland: Springer. doi: 10.1007/978-3-030-23459-1_2
Douglass, A., & Legge, M. (2019). Regulating, surrogacy in New Zealand: Evolving policy and cautious liberalism under the HART Act. In A. Masselot & R. Powell (Eds.), Perspectives on commercial surrogacy in New Zealand: Ethics, law, policy and rights. (pp. 1-24). Christchurch, New Zealand: Centre for Commercial & Corporate Law, University of Canterbury.
Fagerlund, R. D., Ferguson, T. J., Maxwell, H. W. R., Opel-Reading, H. K., Krause, K. L., & Fineran, P. C. (2019). Reconstitution of CRISPR adaptation in vitro and its detection by PCR. In S. Bailey (Ed.), Methods in enzymology (Vol. 616: CRISPR-Cas enzymes). (pp. 411-433). Cambridge, MA: Academic Press. doi: 10.1016/bs.mie.2018.10.024
Maschio, L., Parnell, A. E., Lees, N. R., Willis, C. L., Schaffitzel, C., Stach, J. E. M., & Race, P. R. (2019). Cloning, expression, and purification of intact polyketide synthase modules. In C. Schmidt-Dannert & M. B. Quin (Eds.), Methods in enzymology: (Vol. 617): Metabolons and supramolecular enzyme assemblies. (pp. 63-82). Cambridge, MA: Academic Press. doi: 10.1016/bs.mie.2018.12.018
Shavandi, A., Hou, Y., Carne, A., McConnell, M., & Bekhit, A. E.-D. A. (2019). Marine waste utilization as a source of functional and health compounds. In F. Toldrá (Ed.), Advances in food and nutrition research (Vol. 87). (pp. 187-254). Cambridge, MA: Elsevier. doi: 10.1016/bs.afnr.2018.08.001
Basak, I., & Møller, S. G. (2018). Plant thermotolerance proteins, misfolded proteins, and neurodegenerative diseases. In A. R. Kermode & L. Jiang (Eds.), Molecular pharming: Applications, challenges, and emerging areas. (pp. 457-474). Hoboken, NJ: John Wiley & Sons. doi: 10.1002/9781118801512.ch18
Burrow, K., Young, W., Carne, A., McConnell, M., & Bekhit, A. E.-D. (2018). Interactions of milk proteins with minerals. In G. W. Smithers (Ed.), Reference module in food science. Elsevier. doi: 10.1016/B978-0-08-100596-5.22489-X
Ehrhardt, M. K. G., Warring, S. L., & Gerth, M. L. (2018). Screening chemoreceptor-ligand interactions by high-throughput thermal-shift assays. In M. D. Manson (Ed.), Bacterial chemosensing: Methods and protocols: Methods in molecular biology (Vol. 1729). (pp. 281-290). New York, NY: Humana Press. doi: 10.1007/978-1-4939-7577-8_22
Mungure, T. E., Bekhit, A. E.-D., Carne, A., Roohinejad, S., Mallikarjunan, K., & Birch, J. (2018). Application of HPLC in characterisation of triacylglycerols and detection of adulteration in cold pressed seed oils. In G. W. Smithers (Ed.), Reference module in food science. Elsevier. doi: 10.1016/B978-0-08-100596-5.22526-2
Tantamacharik, T., Carne, A., Agyei, D., Birch, J., & Bekhit, A. E.-D. A. (2018). Use of plant proteolytic enzymes for meat processing. In M. G. Guevara & G. R. Daleo (Eds.), Biotechnological applications of plant proteolytic enzymes. (pp. 43-67). Cham, Switzerland: Springer. doi: 10.1007/978-3-319-97132-2_3
Weller, J. L., & Macknight, R. C. (2018). Functional genomics and flowering time in Medicago truncatula: An overview. In L. A. Cañas & J. P. Beltrán (Eds.), Functional genomics in Medicago truncatula: Methods and protocols: Methods in molecular biology (Vol. 1822). (pp. 261-271). New York, NY: Humana Press. doi: 10.1007/978-1-4939-8633-0_17
Bekhit, A. E.-D. A., Carne, A., Ryder, K., Ha, M., & Kong, L. (2017). Manipulation of meat structure: Use of exogenous proteases. In A. E.-D. A. Bekhit (Ed.), Advances in meat processing technology. (pp. 65-120). Boca Raton, FL: CRC Press. doi: 10.1201/9781315371955
Bekhit, A. E.-D. A., Suwandy, V., Carne, A., Mohamed Ahmed, I. A., & Wang, Z. (2017). Manipulation of meat quality: Electrical stimulation and pulsed electric field. In A. E.-D. A. Bekhit (Ed.), Advances in meat processing technology. (pp. 121-168). Boca Raton, FL: CRC Press. doi: 10.1201/9781315371955
Chatterjee, A., Rodger, E. J., Morison, I. M., Eccles, M. R., & Stockwell, P. A. (2017). Tools and strategies for analysis of genome-wide and gene-specific DNA methylation patterns. In G. J. Seymour, M. P. Cullinan & N. C. K. Heng (Eds.), Oral biology: Molecular techniques and applications: Methods in molecular biology (Vol. 1537). (2nd ed.) (pp. 249-277). New York, NY: Springer. doi: 10.1007/978-1-4939-6685-1_15
Chatterjee, A., Rodger, E. J., Stockwell, P. A., Le Mée, G., & Morison, I. M. (2017). Generating multiple base-resolution DNA methylomes using reduced representation bisulfite sequencing. In G. J. Seymour, M. P. Cullinan & N. C. K. Heng (Eds.), Oral biology: Molecular techniques and applications: Methods in molecular biology (Vol. 1537). (2nd ed.) (pp. 279-298). New York, NY: Springer. doi: 10.1007/978-1-4939-6685-1_16
Chia, J., Burrow, K., Carne, A., McConnell, M., Samuelsson, L., Day, L., … Bekhit, A. E.-D. A. (2017). Minerals in sheep milk. In R. R. Watson, R. J. Collier & V. R. Preedy (Eds.), Nutrients in dairy and their implications for health and disease. (pp. 345-362). London, UK: Elsevier. doi: 10.1016/B978-0-12-809762-5.00027-9
Chisnall, M., & Macknight, R. (2017). Importance of Vitamin C in human health and disease. In M. A. Hossain, S. Munné-Bosch, D. J. Burritt, P. Diaz-Vivancos, M. Fujita & A. Lorence (Eds.), Ascorbic Acid in Plant Growth, Development and Stress Tolerance. (pp. 491-501). Cham, Switzerland: Springer. doi: 10.1007/978-3-319-74057-7
Cridge, A., Harrop, T., Lovegrove, M., Remnant, E., & Dearden, P. (2017). Nutrition and epigenetic change in insects: Evidence and implications. In H. Verlinden (Ed.), Advances in insect physiology (Vol. 53): Insect epigenetics. (pp. 31-54). London, UK: Academic Press. doi: 10.1016/bs.aiip.2017.06.001
Fitzgerald, R. P., & Legge, M. (2017). Ethics for embryologists. In R. M. Shaw (Ed.), Bioethics beyond altruism: Donating and transforming human biological materials. (pp. 141-164). Cham, Switzerland: Palgrave Macmillan. doi: 10.1007/978-3-319-55532-4_6
Peters, B., Aidley, J., Cadzow, M., Twell, D., & Brownfield, L. (2017). Identification of cis-regulatory modules that function in the male germline of flowering plants. In A. Schmidt (Ed.), Plant germline development: Methods and protocols: Methods in molecular biology (Vol. 1669). (pp. 275-293). Springer. doi: 10.1007/978-1-4939-7286-9_22
Twell, D., & Brownfield, L. (2017). Analysis of fluorescent reporter activity in the male germline during pollen development by confocal microscopy. In A. Schmidt (Ed.), Plant germline development: Methods and protocols: Methods in molecular biology (Vol. 1669). (pp. 67-75). Springer. doi: 10.1007/978-1-4939-7286-9_6
Weijman, J. F., Riedl, S. J., & Mace, P. D. (2017). Structural studies of ERK2 protein complexes. In G. Jimenez (Ed.), ERK signaling: Methods and protocols: Methods in molecular biology (Vol: 1487). (pp. 53-63). New York, NY: Springer. doi: 10.1007/978-1-4939-6424-6_4
Brownfield, L., & Twell, D. (2016). Plant Reproduction. In eLS. Chichester, UK: John Wiley & Sons. doi: 10.1002/9780470015902.a0002046.pub2
Reid, S., Chan, L. C. L., Matindoost, L., Pushparajan, C., & Visnovsky, G. (2016). Cell culture for production of insecticidal viruses. In T. R. Glare & M. E. Moran-Diez (Eds.), Microbial-based biopesticides: Methods and protocols: Methods in molecular biology (Vol. 1477). (pp. 95-117). New York: Springer. doi: 10.1007/978-1-4939-6367-6_9
Biswas, A., Fineran, P. C., & Brown, C. M. (2015). Computational detection of CRISPR/crRNA targets. In M. Lundgren, E. Charpentier & P. C. Fineran (Eds.), CRISPR: Methods in molecular biology (Vol. 1311). (pp. 77-89). New York, NY: Humana Press. doi: 10.1007/978-1-4939-2687-9_5
Empson, R. M., Tantirigama, M. L. S., Oswald, M. J., Hughes, S. M., & Knöpfel, T. (2015). Combined immunochemistry and live imaging of fluorescent protein expressing neurons in mouse brain. In A. Merighi & L. Lossi (Eds.), Immunocytochemistry and related techniques. (pp. 357-373). New York: Springer. doi: 10.1007/978-1-4939-2313-7_19
Poulter, R. T. M., & Butler, M. I. (2015). Tyrosine recombinase retrotransposons and transposons. In N. L. Craig, M. Chandler, M. Gellert, A. M. Lambowitz, P. A. Rice & S. B. Sandmeyer (Eds.), Mobile DNA III. (pp. 1271-1291). Washington, DC: ASM Press.
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Hill, R. E., & Eaton-Rye, J. J. (2014). Plasmid Construction by SLIC or Sequence and Ligation-Independent Cloning. In S. Valla & R. Lale (Eds.), DNA cloning and assembly methods: Methods in molecular biology (Vol. 1116). (pp. 25-36). New York: Humana. doi: 10.1007/978-1-62703-764-8_2
Mace, P. D., Riedl, S. J., & Salvesen, G. S. (2014). Caspase enzymology and activation mechanisms. In A. Ashkenasi, J. Yuan & J. A. Wells (Eds.), Methods in enzymology: Regulated cell death Part A: Apoptotic mechanisms (Vol.544). (pp. 161-178). San Diego, CA: Academic Press. doi: 10.1016/b978-0-12-417158-9.00007-8
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Sharpe, M. L., Hastings, J. W., & Krause, K. L. (2014). Luciferases and light-emitting accessory proteins: Structural biology. In eLS. Chichester, UK: John Wiley & Sons. doi: 10.1002/9780470015902.a0003064.pub2
Stevens, S. G., & Brown, C. M. (2014). Bioinformatic methods to discover Cis-regulatory elements in mRNAs. In N. K. Kasabov (Ed.), Springer handbook of bio-/neuro-informatics. (pp. 151-169). Dordrecht, The Netherlands: Springer. doi: 10.1007/978-3-642-30574-0_10
Bekhit, A. E., Hopkins, D. L., Farouk, M. M., & Carne, A. (2013). Interventions to improve the tenderness of fresh meat: A future prospect for camel meat research. In I. T. Kadim, O. Mahgoub, B. Faye & M. Farouk (Eds.), Camel meat and meat products. (pp. 153-185). Oxford, UK: CABI.
Hanson-Manful, P., & Patrick, W. M. (2013). Construction and analysis of randomized protein-encoding libraries using error-prone PCR. In J. A. Gerrard (Ed.), Protein nanotechnology: Protocols, instrumentation, and applications. (2nd ed.) (pp. 251-267). Humana Press. doi: 10.1007/978-1-62703-354-1-15
Merriman, T. R., & Flynn, T. J. (2013). Molecular genetics of hyperuricaemia and gout. In eLS. Chichester: John Wiley & Sons. doi: 10.1002/9780470015902.a0025153
Merriman, T. R., & McKinney, C. (2013). An update on the genetic causes of hyperuricemia and gout. In N. Dalbeth, F. Perez-Ruiz & N. Schlesinger (Eds.), Gout. (pp. 54-69). London, UK: Future Medicine. doi: 10.2217/ebo.12.256
Picard, K., Lee, R., Hellens, R., & Macknight, R. (2013). Transient gene expression in Medicago truncatula leaves via agroinfiltration. In R. J. Rose (Ed.), Legume genomics: Methods and protocols: Methods in molecular biology (Vol. 1069). (pp. 215-226). New York: Springer. doi: 10.1007/978-1-62703-613-9_15
Macknight, R. C., Herridge, R. P., & Day, R. C. (2012). Using transcriptomics to reveal gene networks of seed development in Arabidopsis. In G. K. Agrawal & R. Rakwal (Eds.), Seed development: OMICS technologies toward Improvement of seed quality and crop yield. (pp. 99-110). Dordrecht, The Netherlands: Springer. doi: 10.1007/978-94-007-4749-4_6
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