Overview
Genome content and genetic elements within genomes. Genome variation and its effects within and between species. How genomes influence phenotype. Bioinformatic methods used for analysis of genomes.
GENE 315 explores eukaryote genomes and genomic variation, and is highly relevant for all students interested in modern genetics. The central theme of genomic variation links the various modules within the lecture course, which sit alongside laboratory streams designed to reinforce the concepts being taught in class. This includes coverage of both laboratory-based experimental genetics techniques, along with computational methods for the analysis of genetic data.
About this paper
| Paper title | Genomes |
|---|---|
| Subject | Genetics |
| EFTS | 0.15 |
| Points | 18 points |
| Teaching period | Semester 1 (On campus) |
| Domestic Tuition Fees ( NZD ) | $1,173.30 |
| International Tuition Fees | Tuition Fees for international students are elsewhere on this website. |
- Prerequisite
- Two of BIOC 221, GENE 221, GENE 222
- Restriction
- GENE 311
- Schedule C
- Science
- Notes
- (i) GENE222, BIOC221 strongly recommended. (ii) In approved cases another paper from the Science schedule may be substituted for one of these papers.
- Eligibility
Appropriate for students majoring in genetics, other biological and health sciences and molecular biotechnology.
- Contact
- More information link
- Teaching staff
Convenor: Professor Mik Black
Other teaching staff:
Associate Professor Paul Gardner (Department of Biochemistry)
Associate Professor Megan Wilson (Department of Anatomy)
Associate Professor Phillip Wilcox (Department of Mathematics & Statistics)
Dr Suzanne Rowe (AgResearch)
- Paper Structure
The lecture course is divided into the following blocks:
- Exploring the genome
- What do you find when you sequence a genome?
- Genomic variation
- Quantitative genetics
- From genotype to phenotype
The lecture course is complemented by a laboratory course, which provides training in data analysis and relevant genetic methods, including genome analysis; identification and assessment of genomic variation; quantitative genetics and genomic selection; and the impact of genetic variants on phenotype.
- Teaching Arrangements
There are twelve weeks of laboratory classes, run across all teaching modules, and students are assigned to one of two lab streams.
- Textbooks
Textbooks are not required for this paper.
GENE 315 makes very extensive use of reviews and original papers from the scientific literature. PDFs of these will be placed through eReserve on Blackboard.- Graduate Attributes Emphasised
- Global perspective, Interdisciplinary perspective, Lifelong learning, Communication, Critical thinking, Information literacy, Research, Self-motivation, Teamwork.
View more information about Otago's graduate attributes. - Learning Outcomes
Students who successfully complete this paper will gain knowledge and understanding of the basic principles of eukaryote genomics:
- How genomic sequence is obtained and analysed
- Genome annotation
- Genome content and complexity
- Cross-species genomic comparisons
- Methods for the identification of genomic variants
- Quantitative genetics and genomic selection
- Interpretation of phenotype variation in the context of large-scale genomic data sets
- Computer technology skills relating to the analysis of genomic data
Understanding and appreciation of Māori perspectives on genomics, and the application of Mātauranga Māori in genetics research.
Timetable
Overview
Genome content and genetic elements within genomes. Genome variation and its effects within and between species. How genomes influence phenotype. Bioinformatic methods used for analysis of genomes.
GENE 315 explores eukaryote genomes and genomic variation and is highly relevant for all students interested in modern genetics. The central theme of genomic variation links the various modules within the lecture course, which sit alongside laboratory streams designed to reinforce the concepts being taught in class. This includes coverage of both laboratory-based experimental genetics techniques, along with computational methods for the analysis of genetic data.
About this paper
| Paper title | Genomes |
|---|---|
| Subject | Genetics |
| EFTS | 0.15 |
| Points | 18 points |
| Teaching period | Semester 1 (On campus) |
| Domestic Tuition Fees | Tuition Fees for 2025 have not yet been set |
| International Tuition Fees | Tuition Fees for international students are elsewhere on this website. |
- Prerequisite
- Two of BIOC 221, GENE 221, GENE 222
- Restriction
- GENE 311
- Schedule C
- Science
- Notes
- (i) GENE222, BIOC221 strongly recommended. (ii) In approved cases another paper from the Science schedule may be substituted for one of these papers.
- Eligibility
Appropriate for students majoring in genetics, other biological and health sciences and molecular biotechnology.
- Contact
- More information link
- Teaching staff
Convener: Professor Mik Black
Other teaching staff:
Associate Professor Paul Gardner (Department of Biochemistry)
Associate Professor Megan Wilson (Department of Anatomy)
Associate Professor Phillip Wilcox (Department of Mathematics and Statistics)
Dr Suzanne Rowe (AgResearch)
- Paper Structure
The lecture course is divided into the following blocks:
- Exploring the genome
- What do you find when you sequence a genome?
- Genomic variation and Indigenous Perspectives on Genomics
- Quantitative genetics
- From genotype to phenotype
The lecture course is complemented by a laboratory course, which provides training in data analysis and relevant genetic methods, including genome analysis; identification and assessment of genomic variation; quantitative genetics and genomic selection; and the impact of genetic variants on phenotype.
- Teaching Arrangements
There are 12 weeks of laboratory classes, run across all teaching modules, and students are assigned to one of two lab streams.
- Textbooks
Textbooks are not required for this paper.
GENE 315 makes very extensive use of reviews and original papers from the scientific literature. Links to PDFs will be provided in lectures.- Graduate Attributes Emphasised
- Global perspective, Interdisciplinary perspective, Lifelong learning, Communication, Critical thinking, Information literacy, Research, Self-motivation, Teamwork.
View more information about Otago's graduate attributes. - Learning Outcomes
Students who successfully complete this paper will gain knowledge and understanding of the basic principles of eukaryote genomics:
- How genomic sequence is obtained and analysed
- Genome annotation
- Genome content and complexity
- Cross-species genomic comparisons
- Methods for the identification of genomic variants
- Quantitative genetics and genomic selection
- Interpretation of phenotype variation in the context of large-scale genomic data sets
- Computer technology skills relating to the analysis of genomic data
Understanding and appreciation of Māori perspectives on genomics, and the application of Mātauranga Māori in genetics research.