Dutta, A., Yee, A., Ghosh, A., Zarrabi, A., Gimenez, G., Smith, J., Rodger, E., & Chatterjee, A. (2025). Liquid biopsy based DNA methylation biomarker panel for facilitating minimally invasive prostate cancer detection. Proceedings of the Genetics Otago (GO) Annual Symposium. Retrieved from https://blogs.otago.ac.nz/go
Conference Contribution - Published proceedings: Abstract
Smith, J., Ajithkumar, P., Wilkinson, E. J., Dutta, A., Vasantharajan, S. S., Yee, A., Gimenez, G., Subramaniam, R. M., Lau, M., Zarrabi, A. D., Rodger, E. J., & Chatterjee, A. (2024). Genome-scale DNA methylome and transcriptome profiles of prostate cancer recurrence after prostatectomy [Data descriptor]. Data, 9, 150. doi: 10.3390/data9120150
Journal - Research Other
Smith, J. (2024, August-September). Developing a multi-omic signature for prediction of early prostate cancer recurrence following radical prostatectomy. Poster session presented at the Queenstown Research Week (QRW) Cancer Meeting, Queenstown, New Zealand.
Conference Contribution - Poster Presentation (not in published proceedings)
Banerjee, R., Ajithkumar, P., Keestra, N., Smith, J., Gimenez, G., Rodger, E. J., Eccles, M. R., Antony, J., Weeks, R. J., & Chatterjee, A. (2024). Targeted DNA methylation editing using an all-in-one system establishes paradoxical activation of EBF3. Cancers, 16, 898. doi: 10.3390/cancers16050898
Journal - Research Article
Zhang, X., Barnett, E., Smith, J., Wilkinson, E., Subramaniam, R. M., Zarrabi, A., Rodger, E. J., & Chatterjee, A. (2024). Genetic and epigenetic features of neuroendocrine prostate cancer and their emerging applications. In S. Spada & L. Galluzzi (Eds.), International review of cell and molecular biology (Vol. 383): Epigenetic regulation of cancer (Part B). (pp. 41-66). London, UK: Elsevier. doi: 10.1016/bs.ircmb.2023.06.002
Chapter in Book - Research
2025
Conference Contribution - Published proceedings: Abstract
Dutta, A., Yee, A., Ghosh, A., Zarrabi, A., Gimenez, G., Smith, J., Rodger, E., & Chatterjee, A. (2025). Liquid biopsy based DNA methylation biomarker panel for facilitating minimally invasive prostate cancer detection. Proceedings of the Genetics Otago (GO) Annual Symposium. Retrieved from https://blogs.otago.ac.nz/go
2024
Chapter in Book - Research
Zhang, X., Barnett, E., Smith, J., Wilkinson, E., Subramaniam, R. M., Zarrabi, A., Rodger, E. J., & Chatterjee, A. (2024). Genetic and epigenetic features of neuroendocrine prostate cancer and their emerging applications. In S. Spada & L. Galluzzi (Eds.), International review of cell and molecular biology (Vol. 383): Epigenetic regulation of cancer (Part B). (pp. 41-66). London, UK: Elsevier. doi: 10.1016/bs.ircmb.2023.06.002
Journal - Research Article
Banerjee, R., Ajithkumar, P., Keestra, N., Smith, J., Gimenez, G., Rodger, E. J., Eccles, M. R., Antony, J., Weeks, R. J., & Chatterjee, A. (2024). Targeted DNA methylation editing using an all-in-one system establishes paradoxical activation of EBF3. Cancers, 16, 898. doi: 10.3390/cancers16050898
Journal - Research Other
Smith, J., Ajithkumar, P., Wilkinson, E. J., Dutta, A., Vasantharajan, S. S., Yee, A., Gimenez, G., Subramaniam, R. M., Lau, M., Zarrabi, A. D., Rodger, E. J., & Chatterjee, A. (2024). Genome-scale DNA methylome and transcriptome profiles of prostate cancer recurrence after prostatectomy [Data descriptor]. Data, 9, 150. doi: 10.3390/data9120150
Conference Contribution - Poster Presentation (not in published proceedings)
Smith, J. (2024, August-September). Developing a multi-omic signature for prediction of early prostate cancer recurrence following radical prostatectomy. Poster session presented at the Queenstown Research Week (QRW) Cancer Meeting, Queenstown, New Zealand.
2023
Journal - Research Article
Smith, J., Barnett, E., Rodger, E. J., Chatterjee, A., & Subramaniam, R. M. (2023). Neuroendocrine neoplasms: Genetics and epigenetics. PET Clinics, 18, 169-187. doi: 10.1016/j.cpet.2022.11.003
2022
Chapter in Book - Research
Smith, J., Day, R. C., & Weeks, R. J. (2022). Next-generation bisulfite sequencing for targeted DNA methylation analysis. In J. Horsfield & J. Marsman (Eds.), Chromatin: Methods and protocols: Methods in molecular biology (Vol. 2458). (pp. 47-62). New York, NY: Springer. doi: 10.1007/978-1-0716-2140-0_3
Smith, J., Banerjee, R., Weeks, R. J., & Chatterjee, A. (2022). Editing of DNA methylation patterns using CRISPR-based tools. In J. Horsfield & J. Marsman (Eds.), Chromatin: Methods and protocols: Methods in molecular biology (Vol. 2458). (pp. 63-74). New York, NY: Springer. doi: 10.1007/978-1-0716-2140-0_4
Journal - Research Article
Hall, Y., Smith, J., Turner, R. M., Greco, P., Hau, K., & Barak, Y. (2022). Creating opportunities to improve detection of older adult abuse: A national interRAI study. BMC Geriatrics, 22, 220. doi: 10.1186/s12877-022-02938-3
Smith, J., Whittington, F., Ackermann, C., Clarke, R., Hoten-Walker, G., Kubba, Y., Low, C., Partridge, K., Wang, C., Dockerty, J. D., … Hale, L., & Waters, D. L. (2022). Impact of the 2020 New Zealand COVID-19 lockdown on participants in a community-based, peer-led fall prevention program. Australasian Journal on Ageing, 41, e240-e248. doi: 10.1111/ajag.13040
Journal - Research Other
Banerjee, R., Smith, J., Eccles, M. R., Weeks, R. J., & Chatterjee, A. (2022). Epigenetic basis and targeting of cancer metastasis. Trends in Cancer, 8(3), 226-241. doi: 10.1016/j.trecan.2021.11.008
Smith, J., & McIntyre, P. (2022). Bacille Calmette-Guérin vaccination site abscess: When is it a problem? Journal of Paediatrics & Child Health, 58, 715-716. doi: 10.1111/jpc.15635
Conference Contribution - Verbal presentation and other Conference outputs
Smith, J., Banerjee, R., Waly, R., Keestra, N., Gimenez, G., Day, R., Weeks, R. J., & Chatterjee, A. (2022, August). Editing DNA methylation in cancer cells. Verbal presentation at the CRISPR Technologies Satellite Meeting: Queenstown Research Week, Queenstown, New Zealand.
Banerjee, R., Smith, J., Eccles, M. R., Weeks, R. J., Antony, J., & Chatterjee, A. (2022, August). Investigating DNA methylation as a mechanism for paradoxical gene activation using targeted epigenetic editing. Verbal presentation at the CRISPR Technologies Satellite Meeting: Queenstown Research Week, Queenstown, New Zealand.
2021
Journal - Research Article
Smith, J., Banerjee, R., Waly, R., Urbano, A., Gimenez, G., Day, R., Eccles, M. R., Weeks, R. J., & Chatterjee, A. (2021). Locus-specific DNA methylation editing in melanoma cell lines using a CRISPR-based system. Cancers, 13, 5433. doi: 10.3390/cancers13215433
Conference Contribution - Poster Presentation (not in published proceedings)
Banerjee, R., Smith, J., Waly, R., Antony, J., Eccles, M., Weeks, R., & Chatterjee, A. (2021, September). Investigating DNA methylation as a mechanism for paradoxical gene activation using targeted epigenetic editing. Poster session presented at the Achieving Health Equity from Research Conference [Otago Spotlight Series], Wellington, New Zealand.
2020
Journal - Research Other
Smith, J., Sen, S., Weeks, R. J., Eccles, M. R., & Chatterjee, A. (2020). Promoter DNA hypermethylation and paradoxical gene activation. Trends in Cancer, 6(5), 392-406. doi: 10.1016/j.trecan.2020.02.007
Conference Contribution - Published proceedings: Abstract
Smith, J., Banerjee, R., Weeks, R., & Chatterjee, A. (2020). Technical aspects of CRISPR-methylation editing. Proceedings of the Genetics Otago (GO) Epigenetics User Group (EUG) Symposium. Retrieved from https://blogs.otago.ac.nz/go/2020-3/
Banerjee, R., Smith, J., Stockwell, P., Eccles, M., Weeks, R., & Chatterjee, A. (2020). Investigating DNA methylation as a mechanism for gene activation using gene editing technology. Proceedings of the Genetics Otago (GO) Epigenetics User Group (EUG) Symposium. Retrieved from https://blogs.otago.ac.nz/go/2020-3/
Weeks, R. J., Smith, J., Banerjee, R., Ahn, A., Day, R., Chatterjee, A., & Eccles, M. (2020). Using novel CRISPR technology to edit DNA methylation [Invited]. Proceedings of the Genetics Otago (GO) Epigenetics User Group (EUG) Symposium. Retrieved from https://blogs.otago.ac.nz/go/2020-3/
Banerjee, R., Smith, J., Stockwell, P., Eccles, M., Weeks, R., & Chatterjee, A. (2020). Investigating DNA methylation as a mechanism for paradoxical gene activation using epigenomic editing technology. Proceedings of the Genetics Otago (GO) Zoom Symposium. Retrieved from https://blogs.otago.ac.nz/go/2020-3/
2019
Journal - Research Other
Urbano, A., Smith, J., Weeks, R. J., & Chatterjee, A. (2019). Gene-specific targeting of DNA methylation in the mammalian genome. Cancers, 11(10), 1515. doi: 10.3390/cancers11101515
