Dr Euan Rodger

2026

Journal - Research Article

Yassi, M., Ezegbogu, M., Rodger, E. J., Stockwell, P., Chatterjee, A., & Parry, M. (2026). DNAmBERT: A transformer-based model for non-invasive cancer diagnosis using DNA sequence and methylation data. Briefings in Bioinformatics, 27(5), bbag455. doi: 10.1093/bib/bbag455

Ezegbogu, M., Stockwell, P. A., Reid, G., Brockway, B., Kumar, R., Rodger, E., & Chatterjee, A. (2026). Comparison of enzymatic and bisulfite-based methods for sequencing-based cell-free DNA methylation profiling. Frontiers in Epigenetics & Epigenomics, 3, 1693925. doi: 10.3389/freae.2025.1693925

Lynch-Sutherland, C. F., McDougall, L. I., Stockwell, P. A., Chatterjee, A., Gamage, T. K. J. B., James, J. L., Rodger, E. J., Weeks, R. J., Ludgate, J. L., Macaulay, E. C., & Eccles, M. R. (2026). Transcriptional activation of transposable element (TE)-associated genes is frequently associated with altered promoter methylation in placenta and melanoma. International Journal of Molecular Sciences, 27, 5827. doi: 10.3390/ijms27135827

Vasantharajan, S. S., Ajithkumar, P., Moloney-Geany, K., O'Neill, H., Rodger, E. J., Pattison, S., Gimenez, G., & Chatterjee, A. (2026). Single-cell RNA sequencing of circulating tumour cells in colorectal cancer. Molecular Biology Reports, 53, 1224. doi: 10.1007/s11033-026-12427-0

Journal - Research Other

Kumar, R., Farry, S. M., Ezegbogu, M., Reid, G., Rodger, E. J., Brockway, B., & Chatterjee, A. (2026). Epigenetic profiling for early detection and treatment response monitoring in non–small cell lung cancer: Protocol for a prospective translational biomarker study. JMIR Research Protocols, 15, e105338. doi: 10.2196/105338

Yee, A., Smith, J., Kumar, R., Sali, A., Rodger, E. J., & Chatterjee, A. (2026). Towards implementation of precision medicine biomarkers in early detection and prognostication of prostate cancer. Cancer & Metastasis Reviews, 45, 50. doi: 10.1007/s10555-026-10357-8

2025

Chapter in Book - Research

Peppercorn, K., Edgar, C. D., Al Momani, S., Rodger, E. J., Tate, W. P., & Chatterjee, A. (2025). Application of DNA methylome analysis to patients with ME/CFS. In W. P. Tate & K. Peppercorn (Eds.), Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS): Methods and protocols: Methods in molecular biology (Vol. 2920). (pp. 141-160). New York, NY: Humana Press. doi: 10.1007/978-1-0716-4498-0_9

Journal - Research Article

Sharma, S., Hodges, L. D., Peppercorn, K., Davis, J., Edgar, C. D., Rodger, E. J., Chatterjee, A., & Tate, W. P. (2025). Precision medicine study of post-exertional malaise epigenetic changes in myalgic encephalomyelitis/chronic fatigue patients during exercise. International Journal of Molecular Sciences, 26, 8563. doi: 10.3390/ijms26178563

Peppercorn, K., Sharma, S., Edgar, C. D., Stockwell, P. A., Rodger, E. J., Chatterjee, A., & Tate, W. P. (2025). Comparing DNA methylation landscapes in peripheral blood from Myalgic Encephalomyelitis/Chronic Fatigue Syndrome and Long COVID patients. International Journal of Molecular Sciences, 26, 6631. doi: 10.3390/ijms26146631

Hossain, S. M., Gimenez, G., Stockwell, P., Weeks, R., Almomani, S., Jones, G. T., Ratajska, M., Shuen, M., Bhat, B., … Rodger, E., Jackson, C., Chatterjee, A., & Eccles, M. R. (2025). Pre-treatment DNA methylome and transcriptome profiles correlate with melanoma response to anti-PD1 immunotherapy. Cancer Letters, 618, 217638. doi: 10.1016/j.canlet.2025.217638

Conference Contribution - Published proceedings: Abstract

Sharma, S., Peppercorn, K., Rodger, E., Tate, W. P., & Chatterjee, A. (2025). Developing a blood-based epigenomic signature for ME/CFS and Long COVID using Peripheral Blood Mononuclear Cells (PBMCs). Proceedings of the Genetics Otago (GO) Annual Symposium. Retrieved from https://blogs.otago.ac.nz/go

Griffiths, B. W. C., Peppercorn, K., Rodger, E., Chatterjee, A., & Tate, W. P. (2025). A genetic characterisation of Myalgic Encephalomyelitis/Chronic Fatigue Syndrome predisposition. Proceedings of the Genetics Otago (GO) Annual Symposium. Retrieved from https://blogs.otago.ac.nz/go

Dutta, A., Yee, A., Ghosh, A., Zarrabi, A., Gimenez, G., Smith, J., Rodger, E., & Chatterjee, A. (2025). Liquid biopsy based DNA methylation biomarker panel for facilitating minimally invasive prostate cancer detection. Proceedings of the Genetics Otago (GO) Annual Symposium. Retrieved from https://blogs.otago.ac.nz/go

Tate, W. P., Peppercorn, K., Griffiths, B. W. C., Sharma, S., Rodger, E., & Chatterjee, A. (2025). Understanding the genetics and epigenetics of the post-viral fatigue syndromes, Myalgic Encephalomyelitis/Chronic Fatigue Syndrome, and Long COVID. Proceedings of the Genetics Otago (GO) Annual Symposium. Retrieved from https://blogs.otago.ac.nz/go

Conference Contribution - Poster Presentation (not in published proceedings)

Sharma, S., Peppercorn, K., Rodger, E., Tate, W., & Chatterjee, A. (2025, February). Developing a blood-based epigenomic signature for ME/CFS and Long COVID using Peripheral Blood Mononuclear Cells (PBMCs). Poster session presented at the Maurice Wilkins Centre (MWC) Research Symposium, Auckland, New Zealand.

2024

Chapter in Book - Research

Zhang, X., Barnett, E., Smith, J., Wilkinson, E., Subramaniam, R. M., Zarrabi, A., Rodger, E. J., & Chatterjee, A. (2024). Genetic and epigenetic features of neuroendocrine prostate cancer and their emerging applications. In S. Spada & L. Galluzzi (Eds.), International review of cell and molecular biology (Vol. 383): Epigenetic regulation of cancer (Part B). (pp. 41-66). London, UK: Elsevier. doi: 10.1016/bs.ircmb.2023.06.002

Journal - Research Article

Davis, W. J. H., Drummond, C., Gimenez, G., Rodger, E., Chatterjee, A., & Reid, G. (2024). MALAT1 And NEAT1 contribute to adaptive mutability in the transition from drug tolerance to drug resistance in lung cancer. Journal of Thoracic Oncology, 19(Suppl. 10), s436-S437. doi: 10.1016/j.jtho.2024.09.795

Stockwell, P. A., Rodger, E. J., Gimenez, G., Morison, I. M., & Chatterjee, A. (2024). DMAP2: A pipeline for analysis of whole-genome-scale DNA methylation sequencing data. Current Protocols, 4, 370003. doi: 10.1002/cpz1.70003

Banerjee, R., Ajithkumar, P., Keestra, N., Smith, J., Gimenez, G., Rodger, E. J., Eccles, M. R., Antony, J., Weeks, R. J., & Chatterjee, A. (2024). Targeted DNA methylation editing using an all-in-one system establishes paradoxical activation of EBF3. Cancers, 16, 898. doi: 10.3390/cancers16050898

Ajithkumar, P., Gimenez, G., Stockwell, P. A., Almomani, S., Bowden, S. A., Leichter, A. L., … Pattison, S., … Frizelle, F. A., Eccles, M. R., Purcell, R. V., Rodger, E. J., & Chatterjee, A. (2024). DNA methylome and transcriptome maps of primary colorectal cancer and matched liver metastasis. Data, 9(1), 8. doi: 10.3390/data9010008

Journal - Research Other

Smith, J., Ajithkumar, P., Wilkinson, E. J., Dutta, A., Vasantharajan, S. S., Yee, A., Gimenez, G., Subramaniam, R. M., Lau, M., Zarrabi, A. D., Rodger, E. J., & Chatterjee, A. (2024). Genome-scale DNA methylome and transcriptome profiles of prostate cancer recurrence after prostatectomy [Data descriptor]. Data, 9, 150. doi: 10.3390/data9120150

Ezegbogu, M., Wilkinson, E., Reid, G., Rodger, E. J., Brockway, B., Russell-Camp, T., Kumar, R., & Chatterjee, A. (2024). Cell-free DNA methylation in the clinical management of lung cancer. Trends in Molecular Medicine, 30(5), 499-515. doi: 10.1016/j.molmed.2024.03.007

Ajithkumar, P., Vasantharajan, S. S., Pattison, S., McCall, J. L., Rodger, E. J., & Chatterjee, A. (2024). Exploring potential epigenetic biomarkers for colorectal cancer metastasis. International Journal of Molecular Sciences, 25, 874. doi: 10.3390/ijms25020874

Conference Contribution - Poster Presentation (not in published proceedings)

Rodger, E. (2024, August-September). Epigenomic profiling of paired colorectal cancer samples to identify drivers of early metastasis. Poster session presented at the Queenstown Research Week (QRW) Cancer Meeting, Queenstown, New Zealand.

Conference Contribution - Verbal presentation and other Conference outputs

Davis, W. J. H., Drummond, C. J., Gimenez, G., Rodger, E., Chatterjee, A., & Reid, G. (2024, August-September). A dark matter: The lncRNA MALAT1 contributes to the transition from drug tolerance to drug resistance in lung adenocarcinoma. Verbal presentation at the Queenstown Research Week (QRW) Cancer Meeting, Queenstown, New Zealand.

2023

Chapter in Book - Research

Gimenez, G., Stockwell, P. A., Rodger, E. J., & Chatterjee, A. (2023). Strategy for RNA-seq experimental design and data analysis. In G. J. Seymour, M. P. Cullinan, N. C. K. Heng & P. R. Cooper (Eds.), Oral biology: Molecular techniques and applications: Methods in molecular biology (Vol. 2588). (3rd ed.) (pp. 249-278). New York, NY: Springer. doi: 10.1007/978-1-0716-2780-8_16

Vasantharajan, S. S., Barnett, E., Gray, E. S., Rodger, E. J., Eccles, M. R., Pattison, S., Munro, F., & Chatterjee, A. (2023). Size-based method for enrichment of circulating tumor cells from blood of colorectal cancer patients. In G. J. Seymour, M. P. Cullinan, N. C. K. Heng & P. R. Cooper (Eds.), Oral biology: Molecular techniques and applications: Methods in molecular biology (Vol. 2588). (3rd ed.) (pp. 231-248). New York, NY: Springer. doi: 10.1007/978-1-0716-2780-8_15

Journal - Research Article

Rodger, E. J., Gimenez, G., Ajithkumar, P., Stockwell, P. A., Almomani, S., Bowden, S. A., Leichter, A. L., Ahn, A., Pattison, S., McCall, J. L., … Frizelle, F. A., Eccles, M. R., Purcell, R. V., & Chatterjee, A. (2023). An epigenetic signature of advanced colorectal cancer metastasis. iScience, 26(6), 106986. doi: 10.1016/j.isci.2023.106986

Fitzgerald, S., Blenkiron, C., Stephens, R., Mathy, J. A., Somers-Edgar, T., Rolfe, G., … Jackson, C., Eccles, M., … Rodger, E., … Guilford, P., … Print, C. G. (2023). Dynamic ctDNA mutational complexity in patients with melanoma receiving immunotherapy. Molecular Diagnosis & Therapy, 27, 537-550. doi: 10.1007/s40291-023-00651-4

Smith, J., Barnett, E., Rodger, E. J., Chatterjee, A., & Subramaniam, R. M. (2023). Neuroendocrine neoplasms: Genetics and epigenetics. PET Clinics, 18, 169-187. doi: 10.1016/j.cpet.2022.11.003

Journal - Research Other

Rodger, E. J., Stockwell, P. A., Almomani, S., Eccles, M. R., & Chatterjee, A. (2023). Protocol for generating high-quality genome-scale DNA methylation sequencing data from human cancer biospecimens. STAR Protocols, 4, 102714. doi: 10.1016/j.xpro.2023.102714

2022

Chapter in Book - Research

Al Momani, S., Rodger, E. J., Stockwell, P. A., Eccles, M. R., & Chatterjee, A. (2022). Generating sequencing-based DNA methylation maps from low DNA input samples. In J. Horsfield & J. Marsman (Eds.), Chromatin: Methods and protocols: Methods in molecular biology (Vol. 2458). (pp. 3-21). New York, NY: Springer. doi: 10.1007/978-1-0716-2140-0_1

Journal - Research Article

Vasantharajan, S. S., Barnett, E., Gray, E. S., McCall, J. L., Rodger, E. J., Eccles, M. R., Munro, F., Pattison, S., & Chatterjee, A. (2022). Assessment of a size-based method for enriching circulating tumour cells in colorectal cancer. Cancers, 14, 3446. doi: 10.3390/cancers14143446

Journal - Research Other

O'Neill, H., Lee, H., Gupta, I., Rodger, E. J., & Chatterjee, A. (2022). Single-cell DNA methylation analysis in cancer. Cancers, 14, 6171. doi: 10.3390/cancers14246171

Conference Contribution - Poster Presentation (not in published proceedings)

Keestra, N., Weeks, R., Rodger, E., & Chatterjee, A. (2022, August). CRISPR methylation-editing screen to identify drivers of tumour metastasis. Poster session presented at the CRISPR Technologies Satellite Meeting: Queenstown Research Week, Queenstown, New Zealand.

Conference Contribution - Verbal presentation and other Conference outputs

Vasantharajan, S. S., Barnett, E., Eccles, M. R., Pattison, S., Rodger, E. J., McCall, J. L., … Munro, F., & Chatterjee, A. (2022, September). Evaluation of a membrane-based method for enriching circulating tumour cells from the blood of colorectal cancer patients. Verbal presentation at the Postgraduate & Early Career Researchers Committee (PERC) & Division of Health Sciences Early & Mid-Career Researcher (EMCR) Joint Research Symposium, Dunedin, New Zealand.

Shyam, S., Eccles, M. R., Pattison, S., Rodger, E. J., McCall, J. L., Gray, E. S., & Chatterjee, A. (2022, August). Evaluation of a membrane-based method for enriching circulating tumour cells from the blood of colorectal cancer patients. Verbal presentation at the Cancer Satellite Meeting: Queenstown Research Week, Queenstown, New Zealand.

2021

Journal - Research Article

Tschirley, A. M., Stockwell, P. A., Rodger, E. J., Eltherington, O., Morison, I. M., Christensen, N., Chatterjee, A., & Hibma, M. (2021). The mouse papillomavirus epigenetic signature is characterised by DNA hypermethylation after lesion regression. Viruses, 13, 2045. doi: 10.3390/v13102045

Ahn, A., Rodger, E. J., Motwani, J., Gimenez, G., Stockwell, P. A., Parry, M., … Chatterjee, A., & Eccles, M. R. (2021). Transcriptional reprogramming and constitutive PD-L1 expression in melanoma are associated with dedifferentiation and activation of interferon and tumour necrosis factor signalling pathways. Cancers, 13, 4250. doi: 10.3390/cancers13174250

Motwani, J., Rodger, E. J., Stockwell, P. A., Baguley, B. C., Macaulay, E. C., & Eccles, M. R. (2021). Genome-wide DNA methylation and RNA expression differences correlate with invasiveness in melanoma cell lines. Epigenomics, 13(8), 577-598. doi: 10.2217/epi-2020-0440

Shyam, S., Eccles, M. R., Rodger, E. J., Pattison, S., McCall, J. L., Gray, E. S., … Chatterjee, A. (2021). The epigenetic landscape of circulating tumour cells. Biochimica et Biophysica Acta: Reviews on Cancer, 1875(188514). doi: 10.1016/j.bbcan.2021.188514

Tran, K. B., Gimenez, G., Tsai, P., Kolekar, S., Rodger, E., Chatterjee, A., … Eccles, M. R., … Shepherd, P. R. (2021). Genomic and signalling pathway characterisation of the NZM panel of melanoma cell lines: A valuable model for studying the impact of genetic diversity in melanoma. Pigment Cell & Melanoma Research, 34(1), 136-143. doi: 10.1111/pcmr.12908

Journal - Research Other

Bowden, S. A., Rodger, E. J., Chatterjee, A., Eccles, M. R., & Stayner, C. (2021). Recent discoveries in epigenetic modifications of polycystic kidney disease. International Journal of Molecular Sciences, 22(24), 13327. doi: 10.3390/ijms222413327

Conference Contribution - Published proceedings: Abstract

Shyam, S., Eccles, M., Pattison, S., Rodger, E., McCall, J., Gray, E., & Chatterjee, A. (2021). Identification of tumour specific-epigenetic signatures in circulating tumour cells to understand their role in colorectal cancer metasis. Proceedings of the Genetics Otago (GO) Annual Symposium. Retrieved from https://blogs.otago.ac.nz/go

2020

Journal - Research Article

Tiffen, J., Gallagher, S., Filipp, F., Gunatilake, D., Al Emran, A., Cullinane, C., … Chatterjee, A., Rodger, E. J., Eccles, M. R., & Hersey, P. (2020). EZH2 cooperates with DNA methylation to downregulate key tumour suppressors and IFN signatures in melanoma. Journal of Investigative Dermatology, 140, 2442-2454.e5. doi: 10.1016/j.jid.2020.02.042

Bowden, S. A., Stockwell, P. A., Rodger, E. J., Parry, M. F., Eccles, M. R., Stayner, C., & Chatterjee, A. (2020). Extensive inter-cyst DNA methylation variation in autosomal dominant polycystic kidney disease revealed by genome scale sequencing. Frontiers in Genetics, 11, 348. doi: 10.3389/fgene.2020.00348

Jones, G. T., Marsman, J., Bhat, B., Phillips, V. L., Chatterjee, A., Rodger, E. J., Williams, M. J. A., van Rij, A. M., & McCormick, S. P. A. (2020). DNA methylation profiling identifies a high effect genetic variant for lipoprotein(a) levels. Epigenetics, 15(9), 949-958. doi: 10.1080/15592294.2020.1739797

Conference Contribution - Published proceedings: Abstract

Ajithkumar, P., McCall, J., Guilford, P., Pattison, S., Rodger, E., & Chatterjee, A. (2020). Epigenetic profiling of colorectal cancer to predict patients at high risk of metastasis. Proceedings of the Genetics Otago (GO) Epigenetics User Group (EUG) Symposium. Retrieved from https://blogs.otago.ac.nz/go/2020-3/

Ahn, A., Rodger, E. J., Stockwell, P. A., Parry, M., Motwani, J., Gallagher, S. J., … Chatterjee, A., & Eccles, M. R. (2020). mRNA and long non-coding RNA expression defines constitutive and inducible PD-L1 expression in melanoma and associated with treatment resistance and response. Proceedings of the Genetics Otago (GO) Epigenetics User Group (EUG) Symposium. Retrieved from https://blogs.otago.ac.nz/go/2020-3/

Chatterjee, A., McCall, J., Guilford, P., Pattison, S., Rodger, E., & Ajithkumar, P. (2020). Epigenomic profiling of colorectal cancer to predict patients at high risk of metastasis. Cancer Research, 80(16, Suppl.), 2434. doi: 10.1158/1538-7445.Am2020-2434

2019

Journal - Research Article

Rodger, E. J., Chatterjee, A., Stockwell, P. A., & Eccles, M. R. (2019). Characterisation of DNA methylation changes in EBF3 and TBC1D16 associated with tumour progression and metastasis in multiple cancer types. Clinical Epigenetics, 11, 114. doi: 10.1186/s13148-019-0710-5

Journal - Research Other

Al Emran, A., Chatterjee, A., Rodger, E. J., Tiffen, J. C., Gallagher, S. J., Eccles, M. R., & Hersey, P. (2019). Targeting DNA methylation and EZH2 activity to overcome melanoma resistance to immunotherapy. Trends in Immunology, 40(4), 328-344. doi: 10.1016/j.it.2019.02.004

Conference Contribution - Published proceedings: Abstract

Motwani, J., Rodger, E. J., Stockwell, P. A., & Eccles, M. R. (2019). Genome-wide DNA methylation and gene expression analysis of non-invasive and invasive melanoma cell lines. Proceedings of the 16th Asian Conference on Transcription. (pp. 68). Retrieved from https://act2019.p.events4you.currinda.com/days/2019-12-02

Chatterjee, A., Rodger, E. J., Ahn, A., Stockwell, P. A., Parry, M., Gallagher, S., … Eccles, M. (2019). Methylome and transcriptome programme segregates PD-L1 expressing and non-expressing melanoma. Proceedings of the 16th Asian Conference on Transcription. (pp. 38-39). Retrieved from http://act2019.p.events4you.currinda.com/days/2019-12-02/

Chatterjee, A., Ahn, A., Rodger, E. J., Stockwell, P. A., Parry, M., Motwani, J., … Eccles, M. R. (2019). Global DNA methylation levels regulate PD-L1 expression in melanoma. Cancer Research, 79(13, Suppl.). doi: 10.1158/1538-7445.Am2019-826

Bowden, S., Rodger, E. J., Bates, M., Chatterjee, A., Eccles, M. R., & Stayner, C. (2019). Global methylome analysis of single cysts in human ADPKD. Kidney International Reports, 4(7, Suppl.), (pp. S47). doi: 10.1016/j.ekir.2019.05.125

Conference Contribution - Poster Presentation (not in published proceedings)

Stayner, C., Bowden, S., Rodger, E. J., Bates, M., McDougall, L., Perreau, T., Chatterjee, A., & Eccles, M. R. (2019, August-September). Do epigenetic events underpin potential new treatment targets in cystic kidney disease? Poster session presented at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

2018

Chapter in Book - Research

Askarian-Amiri, M. E., Rodger, E. J., Chatterjee, A., Finlay, G., & Baguley, B. C. (2018). Epigenetics in melanoma. In A. I. Riker (Ed.), Melanoma: A modern multidisciplinary approach. (pp. 115-132). Cham, Switzerland: Springer. doi: 10.1007/978-3-319-78310-9_7

Chatterjee, A., Ahn, A., Rodger, E. J., Stockwell, P. A., & Eccles, M. R. (2018). A guide for designing and analyzing RNA-Seq data. In N. Raghavachari & N. Garcia-Reyero (Eds.), Gene expression analysis: Methods in molecular biology (Vol. 1783). (pp. 35-80). New York, NY: Humana Press. doi: 10.1007/978-1-4939-7834-2_3

Journal - Research Article

Rodger, E. J., Porteous, C. M., Jones, G. T., Legge, M., Kleffmann, T., & McCormick, S. P. A. (2018). Proteomic analysis of liver from lipoprotein(a) transgenic mice shows an oxidative stress and lipid export response. BioMed Research International, 2018, 4963942. doi: 10.1155/2018/4963942

Bowden, S. A., Rodger, E. J., Bates, M., Chatterjee, A., Eccles, M. R., & Stayner, C. (2018). Genome-scale single nucleotide resolution analysis of DNA methylation in human autosomal dominant polycystic kidney disease. American Journal of Nephrology, 48(6), 415-424. doi: 10.1159/000494739

Chatterjee, A., Rodger, E. J., Ahn, A., Stockwell, P. A., Parry, M., Motwani, J., … Eccles, M. R., & Hersey, P. (2018). Marked global DNA hypomethylation is associated with constitutive PD-L1 expression in melanoma. iScience, 4, 312-325. doi: 10.1016/j.isci.2018.05.021

Chatterjee, A., Rodger, E. J., & Eccles, M. R. (2018). Epigenetic drivers of tumourigenesis and cancer metastasis. Seminars in Cancer Biology, 51, 149-159. doi: 10.1016/j.semcancer.2017.08.004

Conference Contribution - Published proceedings: Abstract

Fitzgerald, S., Lasham, A., Blenkiron, C., Shields, P., Rolfe, G., Stephens, R., … Jackson, C., Rodger, E., Eccles, M., Day, R., Guilford, P., … Print, C. (2018). Development of plasma genomic biomarkers for mutation detection and monitoring in New Zealand cancer patients. Proceedings of the New Zealand Society for Oncology (NZSO) Conference. Retrieved from http://www.nzsoncology.org.nz/

McCormick, S., Porteous, C., Sharma, M., Jones, G., Legge, M., Kleffmann, T., & Rodger, E. (2018). Proteomic analysis of liver from human Lipoprotein(a) transgenic mice shows an oxidative stress and lipid export response. Atherosclerosis Supplements, 32, (pp. 4). doi: 10.1016/j.atherosclerosissup.2018.04.013

Conference Contribution - Poster Presentation (not in published proceedings)

Ahn, A., Rodger, E. J., Stockwell, P. A., Parry, M., Motwani, J., Gallagher, S. J., … Chatterjee, A., & Eccles, M. R. (2018, August). Investigating the role of DNA methylation, gene expression, long non-coding RNA and transposable elements in constitutive PD-L1 expression in melanoma cell lines. Poster session presented at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

Eccles, M., Rodger, E., Chatterjee, A., & Stockwell, P. (2018, August). Is EBF3 promotor hypermethylation an oncogenic epi-mutation in multiple cancer types? Poster session presented at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

Fitzgerald, S., Lasham, A., Blenkiron, C., Shields, P., Rolfe, G., Stephens, R., … Jackson, C., Rodger, E., Eccles, M., Day, R., Guilford, P., … Print, C. (2018, August). Development of plasma genomic biomarkers for mutation detection and monitoring in New Zealand cancer patients. Poster session presented at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

Conference Contribution - Verbal presentation and other Conference outputs

Chatterjee, A., Rodger, E., Ahn, A., Stockwell, P., Parry, M., Motwani, J., … Eccles, M., & Hersey, P. (2018, August). Striking loss of global DNA methylation levels and constitutive PD-L1 expression in melanoma. Verbal presentation at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

2017

Chapter in Book - Research

Chatterjee, A., Rodger, E. J., Morison, I. M., Eccles, M. R., & Stockwell, P. A. (2017). Tools and strategies for analysis of genome-wide and gene-specific DNA methylation patterns. In G. J. Seymour, M. P. Cullinan & N. C. K. Heng (Eds.), Oral biology: Molecular techniques and applications: Methods in molecular biology (Vol. 1537). (2nd ed.) (pp. 249-277). New York, NY: Springer. doi: 10.1007/978-1-4939-6685-1_15

Chatterjee, A., Rodger, E. J., Stockwell, P. A., Le Mée, G., & Morison, I. M. (2017). Generating multiple base-resolution DNA methylomes using reduced representation bisulfite sequencing. In G. J. Seymour, M. P. Cullinan & N. C. K. Heng (Eds.), Oral biology: Molecular techniques and applications: Methods in molecular biology (Vol. 1537). (2nd ed.) (pp. 279-298). New York, NY: Springer. doi: 10.1007/978-1-4939-6685-1_16

Journal - Research Article

Chatterjee, A., Stockwell, P. A., Ahn, A., Rodger, E. J., Leichter, A. L., & Eccles, M. R. (2017). Genome-wide methylation sequencing of paired primary and metastatic cell lines identifies common DNA methylation changes and a role for EBF3 as a candidate epigenetic driver of melanoma metastasis. Oncotarget, 8(4), 6085-6101. doi: 10.18632/oncotarget.14042

Journal - Research Other

Eccles, M. R., Chatterjee, A., & Rodger, E. J. (2017). Identifying drivers of metastasis; towards a systematic approach. Translational Cancer Research, 6(Suppl. 7), S1273-S1276. doi: 10.21037/tcr.2017.09.52

Journal - Professional & Other Non-Research Articles

Rodger, E. J., & Chatterjee, A. (2017). The epigenomic basis of common diseases. Clinical Epigenetics, 9(1), 5. doi: 10.1186/s13148-017-0313-y

Conference Contribution - Poster Presentation (not in published proceedings)

Eccles, M. R., Chatterjee, A., Rodger, E. J., Ahn, A., Leichter, A., Motwani, J., Stockwell, P., & Parry, M. (2017, September). Epigenetic drivers of melanoma metastasis identified by genome-wide reduced-representation bisulphite sequencing (RRBS) analysis. Poster session presented at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

Ahn, A., Rodger, E. J., Eccles, M. R., & Chatterjee, A. (2017, September). Stratification of melanoma patients according to PD-L1 expression, CpG methylation and presence of tumourinfiltrating lymphocytes. Poster session presented at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

Eccles, M. R., Chatterjee, A., Rodger, E. J., Ahn, A., Leichter, A., Motwani, J., Stockwell, P., & Parry, M. (2017, September). Epigenetic driver of melanoma metastasis identified by genome-wide analysis. Poster session presented at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

Conference Contribution - Verbal presentation and other Conference outputs

Eccles, M. R., Chatterjee, A., Rodger, E. J., Ahn, A., Leichter, A., Motwani, J., Stockwell, P., Parry, M., … Gardner, J., … Sarwar, M., … multiple other members of The Maurice Wilkins Centre. (2017, September). Can research involving NZ melanoma patient participation and extensive networking by researchers help reduce the melanoma burden in NZ? Verbal presentation at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

Chatterjee, A., Stockwell, P. A., Leichter, A. L., Ahn, A., Rodger, E. J., & Eccles, M. R. (2017, September). Epigenetic driver of melanoma metastasis and a clue for novel methylation mediated gene activation mechanism? Verbal presentation at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

2016

Journal - Research Article

Chatterjee, A., Stockwell, P. A., Rodger, E. J., Parry, M. F., & Eccles, M. R. (2016). scan_tcga tools for integrated epigenomic and transcriptomic analysis of tumor subgroups. Epigenomics, 8(10), 1315-1330. doi: 10.2217/epi-2016-0063

Chatterjee, A., Lagisz, M., Rodger, E. J., Zhen, L., Stockwell, P. A., Duncan, E. J., Horsfield, J. A., … Nakagawa, S. (2016). Sex differences in DNA methylation and expression in zebrafish brain: A test of an extended ‘male sex drive’ hypothesis. Gene, 590, 307-316. doi: 10.1016/j.gene.2016.05.042

Chatterjee, A., Macaulay, E. C., Rodger, E. J., Stockwell, P. A., Parry, M. F., Roberts, H. E., Slatter, T. L., Hung, N. A., Devenish, C. J., & Morison, I. M. (2016). Placental hypomethylation is more pronounced in genomic loci devoid of retroelements. Genes Genomes Genetics, 6(7), 1911-1921. doi: 10.1534/g3.116.030379

Chatterjee, A., Stockwell, P. A., Rodger, E. J., & Morison, I. M. (2016). Genome-scale DNA methylome and transcriptome profiling of human neutrophils. Scientific Data, 3, 160019. doi: 10.1038/sdata.2016.19

Conference Contribution - Poster Presentation (not in published proceedings)

Macaulay, E. C., Chatterjee, A., Rodger, E. J., Stockwell, P. A., Parry, M. F., Roberts, H. E., Slatter, T. L., Hung, N. A., & Morison, I. M. (2016, March). Placental hypomethylation is more pronounced in genomic loci devoid of retroelements. Poster session presented at the Keystone Symposia on Molecular and Cellular Biology: Chromatin and Epigenetics, Whistler, Canada.

Bowden, S., Bates, M., Chatterjee, A., Rodger, E. J., Eccles, M. R., & Stayner, C. (2016, August-September). CpG DNA hypomethylation occurs in human Autosomal Dominant Polycystic Kidney Disease. Poster session presented at the Queenstown Molecular Biology (QMB) Meetings, Nelson, New Zealand.

Conference Contribution - Verbal presentation and other Conference outputs

Bowden, S., Bates, M., Chatterjee, A., Rodger, E. J., Eccles, M. R., & Stayner, C. (2016, August-September). CpG DNA hypomethylation occurs in human Autosomal Dominant Polycystic Kidney Disease. Verbal presentation at the Queenstown Molecular Biology (QMB) Meetings, Nelson, New Zealand.

Chatterjee, A., Stockwell, P. A., Ahn, A., Rodger, E. J., Leichter, A., & Eccles, M. R. (2016, August-September). A framework and example for identifying epigenetic drivers of cancer metastasis. Verbal presentation at the Queenstown Molecular Biology (QMB) Meetings, Nelson, New Zealand.

2015

Journal - Research Article

Chatterjee, A., Stockwell, P. A., Rodger, E. J., Duncan, E. J., Parry, M. F., Weeks, R. J., & Morison, I. M. (2015). Genome-wide DNA methylation map of human neutrophils reveals widespread inter-individual epigenetic variation. Scientific Reports, 5, 17328. doi: 10.1038/srep17328

Conference Contribution - Poster Presentation (not in published proceedings)

Chatterjee, A., Stockwell, P. A., Rodger, E. J., & Eccles, M. R. (2015, August-September). Flexible analysis of TCGA DNA methylation and gene expression data using UNIX tools. Poster session presented at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

Conference Contribution - Verbal presentation and other Conference outputs

Chatterjee, A., Stockwell, P. A., Ahn, A., Rodger, E. J., Leichter, A. L., & Eccles, M. R. (2015, November). The epigenetic basis of melanoma metastasis. Verbal presentation at the Toxicology Symposium: Toxicology for the Modern Researcher, Dunedin, New Zealand.

Chatterjee, A., Ahn, A., Stockwell, P. A., Rodger, E. J., Leichter, A., & Eccles, M. R. (2015, August-September). Analysis of paired primary and metastatic cell lines identifies common DNA methylation changes in melanoma metastasis. Verbal presentation at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

2014

Journal - Research Article

Rodger, E. J., Chatterjee, A., & Morison, I. M. (2014). 5-hydroxymethylcytosine: A potential therapeutic target in cancer. Epigenomics, 6(5), 503-514. doi: 10.2217/epi.14.39

Stockwell, P. A., Chatterjee, A., Rodger, E. J., & Morison, I. M. (2014). DMAP: Differential methylation analysis package for RRBS and WGBS data. Bioinformatics, 30(13), 1814-1822. doi: 10.1093/bioinformatics/btu126

Conference Contribution - Published proceedings: Abstract

Rodger, E., Chatterjee, A., Stockwell, P., & Morison, I. (2014). DNA methylation markers of myedysplastic syndrome. New Zealand Medical Journal, 127(1398). Retrieved from http://www.nzma.org.nz/journal

2013

Journal - Research Article

Ludgate, J. L., Le Mée, G., Fukuzawa, R., Rodger, E. J., Weeks, R. J., Reeve, A. E., & Morison, I. M. (2013). Global demethylation in loss of imprinting subtype of Wilms tumor. Genes Chromosomes & Cancer, 52(2), 174-184. doi: 10.1002/gcc.22017

2012

Journal - Research Article

Laskar, A., Chatterjee, A., Chatterjee, S., & Rodger, E. J. (2012). Three-dimensional molecular modeling of a diverse range of SC clan serine proteases. Molecular Biology International, 2012, 580965. doi: 10.1155/2012/580965

Chatterjee, A., Rodger, E. J., Stockwell, P. A., Weeks, R. J., & Morison, I. M. (2012). Technical considerations for reduced representation bisulfite sequencing with multiplexed libraries. Journal of Biomedicine & Biotechnology, 2012, 741542. doi: 10.1155/2012/741542

Laskar, A., Rodger, E. J., Chatterjee, A., & Mandal, C. (2012). Modeling and structural analysis of PA clan serine proteases. BMC Research Notes, 5, 256. doi: 10.1186/1756-0500-5-256

Rodger, E. J., Suetani, R. J., Jones, G. T., Kleffmann, T., Carne, A., Legge, M., & McCormick, S. P. A. (2012). Proteomic analysis of aortae from human lipoprotein(a) transgenic mice shows an early metabolic response independent of atherosclerosis. PLoS ONE, 7(1), e30383. doi: 10.1371/journal.pone.0030383

Chatterjee, A., Stockwell, P. A., Rodger, E. J., & Morison, I. M. (2012). Comparison of alignment software for genome-wide bisulphite sequence data. Nucleic Acids Research, 40(10), e79. doi: 10.1093/nar/gks150

Rodger, E. J., & Morison, I. M. (2012). Myelodysplastic syndrome in New Zealand and Australia. Internal Medicine Journal, 42(11), 1235-1242. doi: 10.1111/j.1445-5994.2011.02619.x

Conference Contribution - Poster Presentation (not in published proceedings)

Chatterjee, A., Stockwell, P. A., Rodger, E. J., & Morison, I. M. (2012, September). Base-pair resolution DNA methylation map of neutrophils indicates widespread epigenetic variation among normal individuals. Poster session presented at the Division of Health Sciences Research Forum: Health Matters: Research Excellence at Otago, Dunedin, New Zealand.

Chatterjee, A., Stockwell, P. A., Rodger, E. J., & Morison, I. M. (2012, August). Base-pair resolution DNA methylation map of neutrophils indicates widespread epigenetic variation among normal individuals. Poster session presented at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

Conference Contribution - Verbal presentation and other Conference outputs

Chatterjee, A., Stockwell, P. A., Rodger, E. J., & Morison, I. M. (2012, November). Genome-wide DNA methylation map indicates widespread epigenetic variation in normal individuals. Verbal presentation at the Gravida Annual Science Symposium: What Makes the Best Start for a Healthy Life? Palmerston North, New Zealand.

2011

Journal - Research Article

Laskar, A., Rodger, E. J., Chatterjee, A., & Mandal, C. (2011). Modeling and structural analysis of evolutionarily diverse S8 family serine proteases. Bioinformation, 7(5), 239-245.

Conference Contribution - Verbal presentation and other Conference outputs

Chatterjee, A., Stockwell, P. A., Rodger, E. J., & Morison, I. M. (2011, September). Genome-scale DNA methylation mapping: Unraveling inter-individual variation. Verbal presentation at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

Rodger, E. J., Chatterjee, A., & Morison, I. M. (2011, September). Mapping the methylome of myelodysplasia. Verbal presentation at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

Other Research Output

Rodger, E. (2011, March). Unravelling MDS. University of Otago Department of Pathology Seminar, Dunedin, New Zealand. [Department Seminar].

2010

Conference Contribution - Published proceedings: Abstract

Rodger, E., Jones, G., Kleffmann, T., Carne, A., & McCormick, S. (2010). Proteomic analysis of aortae from human lipoprotein(a) transgenic mice indicates an altered metabolic and redox response that precedes atherosclerosis. Proceedings of the Human Proteome World Congress (HUPO): Launch of the Human Proteome Project. (pp. 143). Retrieved from http://www.hupo.org/congress/congress_2010/downloads/HUPO2010%20World%20Congress%20Abstract%20Book.pdf

Conference Contribution - Poster Presentation (not in published proceedings)

Chatterjee, A., Rodger, E. J., & Morison, I. M. (2010, September). Genome-scale DNA methylation mapping in normal population. Poster session presented at the Fourth Annual Division of Health Sciences Research Forum, Dunedin, New Zealand.

2009

Conference Contribution - Published proceedings: Abstract

Rodger, E. J., Jones, G. T., Kleffmann, T., Carne, A., & McCormick, S. P. A. (2009). Proteomic characterisation of aortae from human lipoprotein(a) transgenic mice indicates altered metabolic flux and redox state. Proceedings of the ComBio2009 Conference. [CD-ROM] [Abstract]

Awarded Doctoral Degree

Rodger, E. J. (2009). Proteomic characterisation of human lipoprotein(a) transgenic mice (PhD). University of Otago, Dunedin, New Zealand. 269p.

2008

Conference Contribution - Poster Presentation (not in published proceedings)

Rodger, E. J., Revell, A. F., Jones, G. T., Kleffmann, T., & McCormick, S. P. A. (2008, November-December). Proteomic analysis of livers from mice with an atherogenic lipoprotein profile. Poster session presented at the New Zealand Institute of Chemistry, New Zealand Society for Biochemistry and Molecular Biology and the New Zealand Society of Plant Biologists Combined Conference, Dunedin, New Zealand.

2007

Conference Contribution - Published proceedings: Abstract

Rodger, E. J., Revell, A. F., Jones, G. T., Kleffmann, T., Kettle, A. J., & McCormick, S. P. A. (2007). Proteomic analysis of livers from mice with an atherogenic lipoprotein profile. Journal of Clinical Lipidology, 1(5), (pp. 417). doi: 10.1016/j.jacl.2007.08.016

2006

Conference Contribution - Poster Presentation (not in published proceedings)

Rodger, E. J., Revell, A. F., Jones, G. T., Kleffmann, T., & McCormick, S. P. A. (2006, February). Proteomic analysis of structural arterial proteins in a mouse model of atherosclerosis. Poster session presented at the 31st Lorne Proteins Conference, Lorne, Australia.

2004

Conference Contribution - Poster Presentation (not in published proceedings)

Rodger, E. J., Jones, G., & McCormick, S. P. A. (2004, December). Proteomic analysis of arterial protein expression in a mouse model of atherosclerosis. Poster session presented at the 14th Annual Queenstown Molecular Biology Meeting in conjunction with the New Zealand Society for Biochemical and Molecular Biology Conference, Queenstown, New Zealand.