2026
Journal - Research Article
Maharjan, K., Dyer, F., Thompson, R. M., & Giling, D. P. (2026). Influence of temperature on zooplankton emergence from a riverbank and floodplain sediments of a regulated temperate river. Marine & Freshwater Research, 77(3), MF25139. doi: 10.1071/MF25139
Corman, J. R., Halvorson, H. M., Brucker, C., Costanza-Robinson, M. S., Edwards, J. H., Moody, E. K., … Thompson, R., … Zandonà, E. (2026). Limno-STOICH: A comprehensive database linking the elemental stoichiometry of organisms with inland aquatic habitats. Limnology & Oceanography Letters, 11(2), e70105. doi: 10.1002/lol2.70105
2025
Journal - Research Article
Dewenter, B. S., Giling, D. P., Shah, A. A., Hughes, J., Poff, N. L., Ghalambor, C. K., … Thompson, R. M., & Kefford, B. J. (2025). Annual temperature range drives thermal breadth of freshwater insects across multiple spatial scales. Ecology Letters, 28(12), e70288. doi: 10.1111/ele.70288
Stoffels, R. J., & Thompson, R. M. (2025). Avoiding the ‘one-size-fits-all’ trap in policy-based monitoring. River Research & Applications. Advance online publication. doi: 10.1002/rra.70087
Bennett, J. M., Linke, S., Brooks, S., Bush, A., Hitchcock, J., Pollino, C., & Thompson, R. M. (2025). Conservation planning for environmental water to climate refugia in the manageable Murray-Darling Basin. Journal of Environmental Management, 393, 127184. doi: 10.1016/j.jenvman.2025.127184
Hitchcock, J. N., Brooks, A. J., Haeusler, T., McInerney, P. J., Parsons, D. F., & Thompson, R. M. (2025). Inundation of different river bank heights influences organic matter concentrations and zooplankton abundance. Limnology & Oceanography. Advance online publication. doi: 10.1002/lno.70109
Kopf, R. K., McPhan, L., McInerney, P. J., Zampatti, B., Thiem, J., Koster, W., … Thompson, R. M. (2025). Intraspecific body size determines isotopic trophic structure of a large river fish community. Journal of Animal Ecology. Advance online publication. doi: 10.1111/1365-2656.70069
Giling, D. P., Broadhurst, B., Dyer, F., Grace, M., Joehnk, K., McInerney, P. J., … Thompson, R. M. (2025). Season and flow drive productivity of a regulated river. Ecosystems, 28(1), 5. doi: 10.1007/s10021-024-00945-6
2024
Chapter in Book - Research
Thompson, R. M., Cunningham, S. C., Thomson, J. R., & Mac Nally, R. (2024). Drought, disturbance and river resilience in the southern Murray-Darling Basin, Australia. In M. Thoms & I. Fuller (Eds.), Resilience and riverine landscapes. (pp. 135-155). Amsterdam, Netherlands: Elsevier. doi: 10.1016/B978-0-323-91716-2.00023-6
Moggridge, B. J., & Thompson, R. M. (2024). Indigenous engagement to support resilience: A case study from Kamilaroi Country (NSW, Australia). In M. Thoms & I. Fuller (Eds.), Resilience and riverine landscapes. (pp. 363-387). Amsterdam, Netherlands: Elsevier. doi: 10.1016/B978-0-323-91716-2.00006-6
Journal - Research Article
Campbell, C. J., Lovett, S., Capon, S. J., Thompson, R. M., & Dyer, F. J. (2024). More than a service: Values of rivers, wetlands and floodplains are informed by both function and feeling. Environmental Management, 73, 130-143. doi: 10.1007/s00267-023-01900-2
Dewenter, B. S., Shah, A. A., Hughes, J., Poff, N. L., Thompson, R., & Kefford, B. J. (2024). The thermal breadth of temperate and tropical freshwater insects supports the climate variability hypothesis. Ecology & Evolution, 14, e10937. doi: 10.1002/ece3.10937
Reid, M. C., Reid, M. A., Miller, C., & Thompson, R. M. (2024). Hydrogeomorphology creates heterogeneous landscapes: But do fish care? Freshwater Science, 43(1), 1-17. doi: 10.1086/729358
2023
Journal - Research Article
Frost, L. K., Mika, S. J., Thompson, R. M., & Growns, I. (2023). Influence of hydroperiod on aquatic food-web structure and energy production in a floodplain wetland: Implications for environmental flow management. Marine & Freshwater Research, 75, MF23163. doi: 10.1071/MF23163
Campbell, C. J., Lovett, S., Capon, S. J., Thompson, R. M., & Dyer, F. J. (2023). Beyond a ‘just add water’ perspective: Environmental water management for vegetation outcomes. Journal of Environmental Management, 348, 119499. doi: 10.1016/j.jenvman.2023.119499
Alhassen, H. M., Dyer, F. J., & Thompson, R. M. (2023). The photolytic breakdown of caffeine and paracetamol residues in surface water. Water Environment Research, 95, e10909. doi: 10.1002/wer.10909
Journal - Research Other
Dielenberg, J., Bekessy, S., Cumming, G. S., Dean, A. J., Fitzsimons, J. A., Garnett, S., … Thompson, R. M., … Wintle, B. A. (2023). Australia's biodiversity crisis and the need for the Biodiversity Council. Ecological Management & Restoration, 24(2-3), 69-74. doi: 10.1111/emr.12594
Gawne, B., & Thompson, R. (2023). Adaptive water management in response to climate change: The case of the southern Murray-Darling Basin. Australasian Journal of Water Resources, 27(2), 271-288. doi: 10.1080/13241583.2023.2181844
Grigoropoulou, A., Ab Hamid, S., Acosta, R., Olusegun Akindele, E., Al-Shami, S. A., Altermatt, F., … Thompson, R., … Townsend, C., … Domisch, S. (2023). The global EPTO database: Worldwide occurrences of aquatic insects [Data article]. Global Ecology & Biogeography, 32, 642-655. doi: 10.1111/geb.13648
2022
Chapter in Book - Research
Thompson, R. M. (2022). Aquatic food webs in rivers. In D. Bouffard, M.-E. Perga & L. Poff (Eds.), Encyclopedia of inland waters (Vol. 2). (2nd ed.) (pp. 350-363). Elsevier. doi: 10.1016/B978-0-12-819166-8.00084-0
Journal - Research Article
Moggridge, B. J., Thompson, R. M., & Radoll, P. (2022). Indigenous research methodologies in water management: Learning from Australia and New Zealand for application on Kamilaroi country. Wetlands Ecology & Management, 30, 853-868. doi: 10.1007/s11273-022-09866-4
Thompson, R. M., Barbour, E. J., Bradshaw, C. J. A., Briggs, S., Byron, N., Grace, M., … Webb, J. A. (2022). Principles for scientists working at the river science-policy interface. River Research & Applications, 38, 819-831. doi: 10.1002/rra.3951
Greig, H. S., McHugh, P. A., Thompson, R. M., Warburton, H. J., & McIntosh, A. R. (2022). Habitat size influences community stability. Ecology, 103(1), e03545. doi: 10.1002/ecy.3545
Journal - Research Other
Kefford, B. J., Bray, J. P., Nichols, S. J., Reich, J., Mac Nally, R., O'Reilly-Nugent, A., … Thompson, R. (2022). Exploring the interplay of biotic interactions and salinity stress in freshwater invertebrate assemblages: Reply to Chessman (2022). Marine & Freshwater Research, 73(5), 585-587. doi: 10.1071/MF22043
Felipe-Lucia, M. R., Guerrero, A. M., Alexander, S. M., Ashander, J., Baggio, J. A., Barnes, M. L., … Thompson, R. M., … Dee, L. E. (2022). Conceptualizing ecosystem services using social-ecological networks. Trends in Ecology & Evolution, 37(3), 211-222. doi: 10.1016/j.tree.2021.11.012
Campbell, C. J., Thompson, R. M., Capon, S. J., & Dyer, F. J. (2022). Rethinking condition: Measuring and evaluating wetland vegetation responses to water management. Frontiers in Environmental Science, 9, 801250. doi: 10.3389/fenvs.2021.801250
Kefford, B. J., Ghalambor, C. K., Dewenter, B., Poff, N. L., Hughes, J., Reich, J., & Thompson, R. (2022). Acute, diel, and annual temperature variability and the thermal biology of ectotherms. Global Change Biology, 28, 6872-6888. doi: 10.1111/gcb.16453
2021
Journal - Research Article
Bray, J., Miranda, A., Keely-Smith, A., Kaserzon, S., Elisei, G., Chou, A., … Thompson, R., … Kefford, B. J. (2021). Sub-organism (acetylcholinesterase activity), population (survival) and chemical concentration responses reinforce mechanisms of antagonism associated with malathion toxicity. Science of the Total Environment, 778, 146087. doi: 10.1016/j.scitotenv.2021.146087
Bray, J. P., O'Reilly-Nugent, A., King, G. K. K., Kaserzon, S., Nichols, S. J., Mac Nally, R., Thompson, R. M., & Kefford, B. J. (2021). Can SPEcies At Risk of pesticides (SPEAR) indices detect effects of target stressors among multiple interacting stressors? Science of the Total Environment, 763, 142997. doi: 10.1016/j.scitotenv.2020.142997
Reid, M. C., Miller, C., Reid, M. A., & Thompson, R. M. (2021). The importance of spatial and temporal scale in describing hydrogeomorphic character of riverine landscapes. Landscape Ecology, 36, 2763-2779. doi: 10.1007/s10980-021-01269-9
Stewardson, M. J., Bond, N., Brookes, J., Capon, S., Dyer, F., Grace, M., … Thompson, R., … Western, A. W. (2021). The politicisation of science in the Murray-Darling Basin, Australia: Discussion of ‘Scientific integrity, public policy and water governance’. Australasian Journal of Water Resources, 25(2), 141-158. doi: 10.1080/13241583.2021.1996681
Moggridge, B. J., & Thompson, R. M. (2021). Cultural value of water and western water management: An Australian Indigenous perspective. Australasian Journal of Water Resources, 25(1), 4-14. doi: 10.1080/13241583.2021.1897926
Caron, V., Brim Box, J., Dobson, V. P., Dobson, V., Richmond, L., Thompson, R. M., & Dyer, F. (2021). Restoring cultural plant communities at sacred water sites. Australasian Journal of Water Resources, 25(1), 70-79. doi: 10.1080/13241583.2021.1888854
Journal - Research Other
Kefford, B. J., Bray, J. P., Nichols, S. J., Reich, J., Mac Nally, R., O'Reilly-Nugent, A., … Thompson, R. (2021). Understanding salt-tolerance and biota-stressor interactions in freshwater invertebrate communities. Marine & Freshwater Research, 73, 140-146. doi: 10.1071/MF21164
2020
Journal - Research Article
McInerney, P. J., Holt, G., Lester, R. E., Thompson, R. M., Robson, B., Ryder, D. S., … Petrie, R. (2020). Basal resource quality and energy sources in three habitats of a lowland river ecosystem. Limnology & Oceanography, 65, 2757-2771. doi: 10.1002/lno.11548
Shams, F., Dyer, F., Thompson, R., Duncan, R. P., Thiem, J. D., Enge, T. G., & Ezaz, T. (2020). Multiple lines of evidence indicate limited natural recruitment of golden Perch (Macquaria ambigua) in the highly regulated Lachlan River. Water, 12, 1636. doi: 10.3390/w12061636
Growns, I., Ryder, D., McInerney, P., Bond, N., Holt, G., Lester, R., & Thompson, R. (2020). The use of fatty acids to identify food sources of secondary consumers in wetland mesocosms. Journal of Freshwater Ecology, 35(1), 173-189. doi: 10.1080/02705060.2020.1761463
Journal - Research Other
Kefford, B. J., Botwe, P. K., Brooks, A. J., Kunz, S., Marchant, R., Maxwell, S., … Thompson, R. M. (2020). An integrated database of stream macroinvertebrate traits for Australia: Concept and application. Ecological Indicators, 114, 106280. doi: 10.1016/j.ecolind.2020.106280
Jacob, U., Beckerman, A. P., Antonijevic, M., Dee, L. E., Eklöf, A., Possingham, H. P., Thompson, R., … Halpern, B. S. (2020). Marine conservation: Towards a multi-layered network approach. Philosophical Transactions of the Royal Society B, 375, 20190459. doi: 10.1098/rstb.2019.0459
2019
Journal - Research Article
Richmond, E. K., Rosi, E. J., Reisinger, A. J., Hanrahan, B. R., Thompson, R. M., & Grace, M. R. (2019). Influences of the antidepressant fluoxetine on stream ecosystem function and aquatic insect emergence at environmentally realistic concentrations. Journal of Freshwater Ecology, 34(1), 513-531. doi: 10.1080/02705060.2019.1629546
Brose, U., Archambault, P., Barnes, A. D., Bersier, L.-F., Boy, T., Canning-Clode, J., … Thompson, R. M., … Iles, A. C. (2019). Predator traits determine food-web architecture across ecosystems. Nature Ecology & Evolution, 3, 919-927. doi: 10.1038/s41559-019-0899-x
Thompson, R. M., Bond, N., Poff, N. L., & Byron, N. (2019). Towards a systems approach for river basin management: Lessons from Australia's largest river. River Research & Applications, 35, 466-475. doi: 10.1002/rra.3242
Moran, N. P., Wong, B. B. M., & Thompson, R. M. (2019). Communities at the extreme: Aquatic food webs in desert landscapes. Ecology & Evolution, 9, 11464-11475. doi: 10.1002/ece3.5648
Shams, F., Dyer, F., Thompson, R., Duncan, R. P., Thiem, J. D., Majtánová, Z., & Ezaz, T. (2019). Karyotypes and sex chromosomes in two Australian native freshwater fishes, golden perch (Macquaria ambigua) and Murray cod (maccullochella peelii) (Percichthyidae). International Journal of Molecular Sciences, 20, 4244. doi: 10.3390/ijms20174244
Shams, F., Dyer, F., Thompson, R., Duncan, R. P., Thiem, J. D., Kilian, A., & Ezaz, T. (2019). Application of DArT seq derived SNP tags for comparative genome analysis in fishes: An alternative pipeline using sequence data from a non-traditional model species, Macquaria ambigua. PLoS ONE, 14(12), e0226365. doi: 10.1371/journal.pone.0226365
Kopf, R. K., Humphries, P., Bond, N. R., Sims, N. C., Watts, R. J., Thompson, R. M., … McDonald, S. (2019). Macroecology of fish community biomass-size structure: Effects of invasive species and river regulation. Canadian Journal of Fisheries & Aquatic Sciences, 76, 109-122. doi: 10.1139/cjfas-2017-0544
Pomeranz, J. P. F., Thompson, R. M., Poisot, T., & Harding, J. S. (2019). Inferring predator-prey interactions in food webs. Methods in Ecology & Evolution, 10, 356-367. doi: 10.1111/2041-210X.13125
Bray, J. P., Nichols, S. J., Keely-Smith, A., Thompson, R., Bhattacharyya, S., Gupta, S., … Kefford, B. J. (2019). Stressor dominance and sensitivity-dependent antagonism: Disentangling the freshwater effects of an insecticide among co-occurring agricultural stressors. Journal of Applied Ecology, 56, 2020-2033. doi: 10.1111/1365-2664.13430
Bray, J. P., Reich, J., Nichols, S. J., King, G. K. K., Mac Nally, R., Thompson, R., O'Reilly-Nugent, A., & Kefford, B. J. (2019). Biological interactions mediate context and species-specific sensitivities to salinity. Philosophical Transactions of the Royal Society B, 374, 20180020. doi: 10.1098/rstb.2018.0020
Moggridge, B. J., Betterridge, L., & Thompson, R. M. (2019). Integrating Aboriginal cultural values into water planning: A case study from New South Wales, Australia. Australasian Journal of Environmental Management, 26(3), 273-286. doi: 10.1080/14486563.2019.1650837
2018
Chapter in Book - Research
Thompson, R. M., & Williams, R. (2018). Unpacking resilience in food webs: An emergent property or a sum of the parts? In J. C. Moore, P. C. de Ruiter, K. S. McCann & V. Wolters (Eds.), Adaptive food webs: Stability and transitions of real and model ecosystems. (pp. 88-104). Cambridge, UK: Cambridge University Press. doi: 10.1017/9781316871867.009
Bridgewater, P., Guarino, E., & Thompson, R. M. (2018). Hydrology in the anthropocene. In D. A. Dellasala & M. I. Goldstein (Eds.), Encyclopedia of the anthropocene (Vol. 1). (pp. 87-92). Kidlington, UK: Elsevier. doi: 10.1016/B978-0-12-809665-9.09916-X
Jellyman, P. G., McHugh, P. A., Simon, K. S., Thompson, R. M., & McIntosh, A. R. (2018). The effects of brown trout on the trophic webs of New Zealand streams. In J. Lobón-Cerviá & N. Sanz (Eds.), Brown trout: Biology, ecology and management. (pp. 569-597). Hoboken, NJ: John Wiley & Sons. doi: 10.1002/9781119268352.ch22
Journal - Research Article
Saulino, H. H. L., Thompson, R. M., & Trivinho-Strixino, S. (2018). Herbivore functional traits and macroinvertebrate food webs have different responses to leaf chemical compounds of two macrophyte species in a tropical lake’s littoral zone. Aquatic Ecology, 52, 165-176. doi: 10.1007/s10452-018-9652-9
Thompson, R. M., King, A. J., Kingsford, R. M., Mac Nally, R., & Poff, N. L. (2018). Legacies, lags and long-term trends: Effective flow restoration in a changed and changing world. Freshwater Biology, 63, 986-995. doi: 10.1111/fwb.13029
Davis, J., Sim, L., Thompson, R. M., Pinder, A., Brim Box, J., Murphy, N. P., … Sunnucks, P. (2018). Patterns and drivers of aquatic invertebrate diversity across an arid biome. Ecography, 41, 375-387. doi: 10.1111/ecog.02334
Kath, J., Thomson, J. R., Thompson, R. M., Kefford, B. J., Dyer, F. J., & Mac Nally, R. (2018). Interactions among stressors may be weak: Implications for management of freshwater macroinvertebrate communities. Diversity & Distributions, 24, 939-950. doi: 10.1111/ddi.12737
Rolls, R. J., Heino, J., Ryder, D. S., Chessman, B. C., Growns, I. O., Thompson, R. M., & Gido, K. B. (2018). Scaling biodiversity responses to hydrological regimes. Biological Reviews, 93, 971-995. doi: 10.1111/brv.12381
2017
Journal - Research Article
Moran, N. P., Mossop, K. D., Thompson, R. M., Chapple, D. G., & Wong, B. B. M. (2017). Rapid divergence of animal personality and syndrome structure across an arid-aquatic habitat matrix. Oecologia, 185, 55-67. doi: 10.1007/s00442-017-3924-2
Sardiña, P., Beardall, J., Beringer, J., Grace, M., & Thompson, R. M. (2017). Consequences of altered temperature regimes for emerging freshwater invertebrates. Aquatic Sciences, 79, 265-276. doi: 10.1007/s00027-016-0495-y
McHugh, I. D., Beringer, J., Cunningham, S. C., Baker, P. J., Cavagnaro, T. R., Mac Nally, R., & Thompson, R. M. (2017). Interactions between nocturnal turbulent flux, storage and advection at an “ideal” eucalypt woodland site. Biogeosciences, 14, 3027-3050. doi: 10.5194/bg-14-3027-2017
Razeng, E., Smith, A. E., Harrisson, K. A., Pavlova, A., Nguyen, T., Pinder, A., … Thompson, R., … Sunnucks, P. (2017). Evolutionary divergence in freshwater insects with contrasting dispersal capacity across a sea of desert. Freshwater Biology, 62, 1443-1459. doi: 10.1111/fwb.12959
Mackintosh, T. J., Davis, J. A., & Thompson, R. M. (2017). The effects of urbanization on trophic relationships in constructed wetlands. Freshwater Science, 36(1), 138-150. doi: 10.1086/690674
Journal - Research Other
Nichols, S. J., Barmuta, L. A., Chessman, B. C., Davies, P. E., Dyer, F. J., Harrison, E. T., … Thompson, R. M. (2017). The imperative need for nationally coordinated bioassessment of rivers and streams. Marine & Freshwater Research, 68, 599-613. doi: 10.1071/MF15329
Robson, B. J., Lester, R. E., Baldwin, D. S., Bond, N. R., Drouart, R., Rolls, R. J., … Thompson, R. M. (2017). Modelling food-web mediated effects of hydrological variability and environmental flows. Water Research, 124, 108-128. doi: 10.1016/j.watres.2017.07.031
Dee, L. E., Thompson, R., Massol, F., Guerrero, A., & Bohan, D. A. (2017). Do social-ecological syndromes predict outcomes for ecosystem services? A reply to Bodin et al. Trends in Ecology & Evolution, 32(8), 549-552. doi: 10.1016/j.tree.2017.06.001
Dee, L. E., Allesina, S., Bonn, A., Eklöf, A., Gaines, S. D., Hines, J., … Thompson, R. M. (2017). Operationalizing network theory for ecosystem service assessments. Trends in Ecology & Evolution, 32(2), 118-130. doi: 10.1016/j.tree.2016.10.011
Rolls, R. J., Baldwin, D. S., Bond, N. R., Lester, R. E., Robson, B. J., Ryder, D. S., Thompson, R. M., & Watson, G. A. (2017). A framework for evaluating food-web responses to hydrological manipulations in riverine systems. Journal of Environmental Management, 203, 136-150. doi: 10.1016/j.jenvman.2017.07.040
Moran, N. P., Wong, B. B. M., & Thompson, R. M. (2017). Weaving animal temperament into food webs: Implications for biodiversity [Forum]. Oikos, 126, 917-930. doi: 10.1111/oik.03642
2016
Journal - Research Article
Klamt, M., Davis, J. A., Thompson, R. M., Marchant, R., & Grant, T. R. (2016). Trophic relationships of the platypus: Insights from stable isotope and cheek pouch dietary analyses. Marine & Freshwater Research, 67, 1196-1204. doi: 10.1071/MF15004
Giling, D. P., Mac Nally, R., & Thompson, R. M. (2016). How sensitive are invertebrates to riparian-zone replanting in stream ecosystems? Marine & Freshwater Research, 67, 1500-1511. doi: 10.1071/MF14360
Mackintosh, T. J., Davis, J. A., & Thompson, R. M. (2016). Impacts of multiple stressors on ecosystem function: Leaf decomposition in constructed urban wetlands. Environmental Pollution, 208, 221-232. doi: 10.1016/j.envpol.2015.08.038
Mackintosh, T. J., Davis, J. A., & Thompson, R. M. (2016). Tracing metals through urban wetland food webs. Ecological Engineering, 94, 200-213. doi: 10.1016/j.ecoleng.2016.05.057
Moran, N. P., Mossop, K. D., Thompson, R. M., & Wong, B. B. M. (2016). Boldness in extreme environments: Temperament divergence in a desert-dwelling fish. Animal Behaviour, 122, 125-133. doi: 10.1016/j.anbehav.2016.09.024
Sowersby, W., Thompson, R. M., & Wong, B. B. M. (2016). Invasive predator influences habitat preferences in a freshwater fish. Environmental Biology of Fishes, 99, 187-193. doi: 10.1007/s10641-015-0466-5
Swirepik, J. L., Burns, I. C., Dyer, F. J., Neave, I. A., O'Brien, M. G., Pryde, G. M., & Thompson, R. M. (2016). Establishing environmental water requirements for the Murray-Darling Basin, Australia's largest developed river system. River Research & Applications, 32, 1153-1165. doi: 10.1002/rra.2975
Razeng, E., Morán-Ordóñez, A., Brim Box, J., Thompson, R., Davis, J., & Sunnucks, P. (2016). A potential role for overland dispersal in shaping aquatic invertebrate communities in arid regions. Freshwater Biology, 61, 745-757. doi: 10.1111/fwb.12744
Richmond, E. K., Rosi-Marshall, E. J., Lee, S. S., Thompson, R. M., & Grace, M. R. (2016). Antidepressants in stream ecosystems: Influence of selective serotonin reuptake inhibitors (SSRIs) on algal production and insect emergence. Freshwater Science, 35(3), 845-855. doi: 10.1086/687841
Journal - Research Other
Woodward, G., Bonada, N., Brown, L. E., Death, R. G., Durance, I., Gray, C., … Thompson, R. M., & Pawar, S. (2016). The effects of climatic fluctuations and extreme events on running water ecosystems. Philosophical Transactions of the Royal Society B, 371, 20150274. doi: 10.1098/rstb.2015.0274
Kefford, B. J., Buchwalter, D., Cañedo-Argüelles, M., Davis, J., Duncan, R. P., Hoffmann, A., & Thompson, R. (2016). Salinized rivers: Degraded systems or new habitats for salt-tolerant faunas? Biology Letters, 12, 20151072. doi: 10.1098/rsbl.2015.1072
2015
Journal - Research Article
Mackintosh, T. J., Davis, J. A., & Thompson, R. M. (2015). The influence of urbanisation on macroinvertebrate biodiversity in constructed stormwater wetlands. Science of the Total Environment, 536, 527-537. doi: 10.1016/j.scitotenv.2015.07.066
McBurnie, G., Davis, J., Thompson, R. M., Nano, C., & Brim-Box, J. (2015). The impacts of an invasive herbivore (Camelus dromedaries) on arid zone freshwater pools: An experimental investigation of the effects of dung on macroinvertebrate colonisation. Journal of Arid Environments, 113, 69-76. doi: 10.1016/j.jaridenv.2014.09.011
Giling, D. P., Mac Nally, R., & Thompson, R. M. (2015). How might cross-system subsidies in riverine networks be affected by altered flow variability? Ecosystems, 18, 1151-1164. doi: 10.1007/s10021-015-9889-2
Grace, M. R., Giling, D. P., Hladyz, S., Caron, V., Thompson, R. M., & Mac Nally, R. (2015). Fast processing of diel oxygen curves: Estimating stream metabolism with BASE (BAyesian Single-station Estimation). Limnology & Oceanography: Methods, 13, 103-114. doi: 10.1002/LOM3.10011
Cunningham, S. C., Cavagnaro, T. R., Mac Nally, R., Paul, K. I., Baker, P. J., Beringer, J., … Thompson, R. M. (2015). Reforestation with native mixed-species plantings in a temperate continental climate effectively sequesters and stabilizes carbon within decades. Global Change Biology, 21, 1552-1566. doi: 10.1111/gcb.12746
McHugh, P. A., Thompson, R. M., Greig, H. S., Warburton, H. J., & McIntosh, A. R. (2015). Habitat size influences food web structure in drying streams. Ecography, 38, 700-712. doi: 10.1111/ecog.01193
Morán-Ordóñez, A., Pavlova, A., Pinder, A. M., Sim, L., Sunnucks, P., Thompson, R. M., & Davis, J. (2015). Aquatic communities in arid landscapes: Local conditions, dispersal traits and landscape configuration determine local biodiversity. Diversity & Distributions, 21, 1230-1241. doi: 10.1111/ddi.12342
Sardiña, P., Beringer, J., Roche, D., & Thompson, R. M. (2015). Temperature influences species interactions between a native and a globally invasive freshwater snail. Freshwater Science, 34(3), 933-941. doi: 10.1086/681639
Heino, J., Melo, A. S., Bini, L. M., Altermatt, F., Al-Shami, S. A., Angeler, D. G., … Thompson, R. M., & Townsend, C. R. (2015). A comparative analysis reveals weak relationships between ecological factors and beta diversity of stream insect metacommunities at two spatial levels. Ecology & Evolution, 5(6), 1235-1248. doi: 10.1002/ece3.1439
Journal - Research Other
Kingsford, R. T., Mac Nally, R., King, A., Walker, K. F., Bino, G., Thompson, R., … Humphries, P. (2015). A commentary on 'Long-term ecological trends of flow-dependent ecosystems in a major regulated river basin', by Matthew J. Colloff, Peter Caley, Neil Saintilan, Carmel A. Pollino and Neville D. Crossman. Marine & Freshwater Research, 66, 970-980. doi: 10.1071/MF15185
Cunningham, S. C., Mac Nally, R., Baker, P. J., Cavagnaro, T. R., Beringer, J., Thomson, J. R., & Thompson, R. M. (2015). Balancing the environmental benefits of reforestation in agricultural regions. Perspectives in Plant Ecology, Evolution & Systematics, 17, 301-317. doi: 10.1016/j.ppees.2015.06.001
Murphy, A. L., Pavlova, A., Thompson, R., Davis, J., & Sunnucks, P. (2015). Swimming through sand: Connectivity of aquatic fauna in deserts. Ecology & Evolution, 5(22), 5252-5264. doi: 10.1002/ece3.1741
2014
Journal - Research Article
Giling, D. P., Grace, M. R., Thomson, J. R., Mac Nally, R., & Thompson, R. M. (2014). Effect of native vegetation loss on stream ecosystem processes: Dissolved organic matter composition and export in agricultural landscapes. Ecosystems, 17, 82-95. doi: 10.1007/s10021-013-9708-6
Monk, A., Charlton-Robb, K., Buddhadasa, S., & Thompson, R. M. (2014). Comparison of mercury contamination in live and dead dolphins from a newly described species, Tursiops australis. PLoS ONE, 9(8), e104887. doi: 10.1371/journal.pone.0104887
Imberger, S. J., Cook, P. L. M., Grace, M. R., & Thompson, R. M. (2014). Tracing carbon sources in small urbanising streams: Catchment-scale stormwater drainage overwhelms the effects of reach-scale riparian vegetation. Freshwater Biology, 59, 168-186. doi: 10.1111/fwb.12256
Journal - Research Other
Thompson, R. M., Beardall, J., Beringer, J., Grace, M., & Sardina, P. (2014). Moving beyond methods: The need for a diverse programme in climate change research. Ecology Letters, 17, 125-e2. doi: 10.1111/ele.12202
2013
Chapter in Book - Research
Stewart, R. I. A., Dossena, M., Bohan, D. A., Jeppesen, E., Kordas, R. L., Ledger, M. E., … Thompson, R., … Woodward, G. (2013). Mesocosm experiments as a tool for ecological climate-change research. In G. Woodward & E. J. O'Gorman (Eds.), Advances in ecological research (Vol. 48). (pp. 71-181). London, UK: Academic Press. doi: 10.1016/B978-0-12-417199-2.00002-1
Journal - Research Article
Hurry, C. R., James, E. A., & Thompson, R. M. (2013). Connectivity, genetic structure and stress response of Phragmites australis: Issues for restoration in a salinising wetland system. Aquatic Botany, 104, 138-146. doi: 10.1016/j.aquabot.2012.08.001
Giling, D. P., Grace, M. R., Mac Nally, R., & Thompson, R. M. (2013). The influence of native replanting on stream ecosystem metabolism in a degraded landscape: Can a little vegetation go a long way? Freshwater Biology, 58, 2601-2613. doi: 10.1111/fwb.12236
Ho, S. S., Bond, N. R., & Thompson, R. M. (2013). Does seasonal flooding give a native species an edge over a global invader? Freshwater Biology, 58, 159-170. doi: 10.1111/fwb.12047
Thompson, R. M., Beardall, J., Beringer, J., Grace, M., & Sardina, P. (2013). Means and extremes: Building variability into community-level climate change experiments [Review]. Ecology Letters, 16, 799-806. doi: 10.1111/ele.12095
Thompson, R. M., Poulin, R., Mouritsen, K. N., & Thieltges, D. W. (2013). Resource tracking in marine parasites: Going with the flow? Oikos, 12(8), 1187-1194. doi: 10.1111/j.1600-0706.2012.00245.x
Journal - Research Other
Davis, J., Pavlova, A., Thompson, R., & Sunnucks, P. (2013). Evolutionary refugia and ecological refuges: Key concepts for conserving Australian arid zone freshwater biodiversity under climate change. Global Change Biology, 19, 1970-1984. doi: 10.1111/gcb.12203
2012
Journal - Research Article
Giling, D. P., Reich, P., & Thompson, R. M. (2012). Riparian vegetation removal alters consumer-resource stoichiometry in an Australian lowland stream. Marine & Freshwater Research, 63, 1-8. doi: 10.1071/MF11092
Perdomo, G., Evans, A., Maraun, M., Sunnucks, P., & Thompson, R. (2012). Mouthpart morphology and trophic position of microarthropods from soils and mosses are strongly correlated. Soil Biology & Biochemistry, 53, 56-63. doi: 10.1016/j.soilbio.2012.05.002
Thomson, J. R., Bond, N. R., Cunningham, S. C., Metzeling, L., Reich, P., Thompson, R. M., & Mac Nally, R. (2012). The influences of climatic variation and vegetation on stream biota: Lessons from the Big Dry in southeastern Australia. Global Change Biology, 18, 1582-1596. doi: 10.1111/j.1365-2486.2011.02609.x
Perdomo, G., Sunnucks, P., & Thompson, R. M. (2012). The role of temperature and dispersal in moss-microarthropod community assembly after a catastrophic event. Philosophical Transactions of the Royal Society B, 367, 3042-3049. doi: 10.1098/rstb.2012.0241
Journal - Research Other
Thompson, R. M., Brose, U., Dunne, J. A., Hall, R. O., Jr, Hladyz, S., Kitching, R. L., … Tylianakis, J. M. (2012). Food webs: Reconciling the structure and function of biodiversity. Trends in Ecology & Evolution, 27(12), 689-697. doi: 10.1016/j.tree.2012.08.005
Thompson, R. M., Dunne, J. A., & Woodward, G. (2012). Freshwater food webs: Towards a more fundamental understanding of biodiversity and community dynamics. Freshwater Biology, 57, 1329-1341. doi: 10.1111/j.1365-2427.2012.02808.x
2011
Journal - Research Article
Thompson, R., & Parkinson, S. (2011). Assessing the local effects of riparian restoration on urban streams. New Zealand Journal of Marine & Freshwater Research, 45(4), 625-636. doi: 10.1080/00288330.2011.569988
Charlton-Robb, K., Gershwin, L.-A., Thompson, R., Austin, J., Owen, K., & McKechnie, S. (2011). A new dolphin species, the burrunan dolphin Tursiops australis sp. nov., endemic to Southern Australian coastal waters. PLoS ONE, 6(9), e24047. doi: 10.1371/journal.pone.0024047
Owen, K., Charlton-Robb, K., & Thompson, R. (2011). Resolving the trophic relations of cryptic species: An example using stable isotope analysis of dolphin teeth. PLoS ONE, 6(2), e16457. doi: 10.1371/journal.pone.0016457
Morris, K., Raulings, E. J., Melbourne, W. H., Mac Nally, R., & Thompson, R. M. (2011). A novel trap for quantifying the dispersal of seeds by wind. Journal of Vegetation Science, 22, 807-817. doi: 10.1111/j.1654-1103.2011.01290.x
Klamt, M., Thompson, R., & Davis, J. (2011). Early response of the platypus to climate warming. Global Change Biology, 17, 3011-3018. doi: 10.1111/j.1365-2486.2011.02472.x
Raulings, E., Morris, K., Thompson, R., & Mac Nally, R. (2011). Do birds of a feather disperse plants together? Freshwater Biology, 56, 1390-1402. doi: 10.1111/j.1365-2427.2011.02576.x
Imberger, S. J., Thompson, R. M., & Grace, M. R. (2011). Urban catchment hydrology overwhelms reach scale effects of riparian vegetation on organic matter dynamics. Freshwater Biology, 56, 1370-1389. doi: 10.1111/j.1365-2427.2011.02575.x
Riede, J. O., Brose, U., Ebenman, B., Jacob, U., Thompson, R., Townsend, C. R., & Jonsson, T. (2011). Stepping in Elton's footprints: A general scaling model for body masses and trophic levels across ecosystems. Ecology Letters, 14(2), 169-178. doi: 10.1111/j.1461-0248.2010.01568.x
2010
Journal - Research Article
Walker, M. K., & Thompson, R. M. (2010). Consequences of realistic patterns of biodiversity loss: An experimental test from the intertidal zone. Marine & Freshwater Research, 61, 1015-1022. doi: 10.1071/MF09244
Thompson, R. M., & Lake, P. S. (2010). Reconciling theory and practise: The role of stream ecology. River Research & Applications, 26, 5-14. doi: 10.1002/rra.1284
Imberger, S. J., Thompson, R. M., & Grace, M. R. (2010). Searching for effective indicators of ecosystem function in urban streams: Assessing cellulose decomposition potential. Freshwater Biology, 55, 2089-2106. doi: 10.1111/j.1365-2427.2010.02469.x
2009
Journal - Research Article
Giling, D., Reich, P., & Thompson, R. M. (2009). Loss of riparian vegetation alters the ecosystem role of a freshwater crayfish (Cherax destructor) in an Australian intermittent lowland stream. Journal of the North American Benthological Society, 28(3), 626-637. doi: 10.1899/09-015.1
Thompson, R. M., Phillips, N. R., & Townsend, C. R. (2009). Biological consequences of clear-cut logging around streams: Moderating effects of management. Forest Ecology & Management, 257(3), 931-940. doi: 10.1016/j.foreco.2008.10.025
Journal - Research Other
Likens, G. E., Walker, K. F., Davies, P. E., Brookes, J., Olley, J., Young, W. J., … Thompson, R., & Oliver, R. L. (2009). Ecosystem science: Toward a new paradigm for managing Australia's inland aquatic ecosystems. Marine & Freshwater Research, 60, 271-279. doi: 10.1071/MF08188
2008
Journal - Research Article
Thompson, R. M., & Ryder, G. R. (2008). Effects of hydro-electrically induced water level fluctuations on benthic communities in Lake Hawea, New Zealand. New Zealand Journal of Marine & Freshwater Research, 42(2), 197-206. doi: 10.1080/00288330809509948
2007
Chapter in Book - Research
Townsend, C. R., & Thompson, R. M. (2007). Body size in streams: Macroinvertebrate community size composition along natural and human-induced environmental gradients. In A. G. Hildrew, D. G. Raffaelli & R. Edmonds-Brown (Eds.), Body size: The structure and function of aquatic ecosystems. (pp. 77-97). Cambridge University Press.
Journal - Research Article
Bates, C. R., Scott, G., Tobin, M., & Thompson, R. (2007). Weighing the costs and benefits of reduced sampling resolution in biomonitoring studies: Perspectives from the temperate rocky intertidal. Biological Conservation, 137, 617-625. doi: 10.1016/j.biocon.2007.03.019
Marczak, L. B., Thompson, R. M., & Richardson, J. S. (2007). Meta-analysis: Trophic level, habitat, and productivity shape the food web effects of resource subsidies. Ecology, 88(1), 140-148. doi: 10.1890/0012-9658(2007)88[140:MTLHAP]2.0.CO;2
Journal - Research Other
Thompson, R., & Starzomski, B. M. (2007). What does biodiversity actually do? A review for managers and policy makers. Biodiversity & Conservation, 16, 1359-1378. doi: 10.1007/s10531-005-6232-9
Thompson, R. M., Hemberg, M., Starzomski, B. M., & Shurin, J. B. (2007). Trophic levels and trophic tangles: The prevalence of omnivory in real food webs [Report]. Ecology, 88(3), 612-617. doi: 10.1890/05-1454
2006
Journal - Research Article
Thompson, R., & Townsend, C. (2006). A truce with neutral theory: Local deterministic factors, species traits and dispersal limitation together determine patterns of diversity in stream invertebrates. Journal of Animal Ecology, 75(2), 476-484.
2005
Chapter in Book - Research
Woodward, G., Thompson, R., Townsend, C. R., & Hildrew, A. G. (2005). Pattern and process in food webs: Evidence from running waters. In A. Belgrano, U. M. Scharler, J. Dunne & R. E. Ulanowicz (Eds.), Aquatic food webs: An ecosystem approach. (pp. 51-66). Oxford, UK: Oxford University Press. doi: 10.1093/acprof:oso/9780198564836.003.0006
Journal - Research Article
Thompson, R. M., & Townsend, C. R. (2005). Energy availability, spatial heterogeneity and ecosystem size predict food-web structure in streams. Oikos, 108(1), 137-148.
Thompson, R. M., & Townsend, C. R. (2005). Food-web topology varies with spatial scale in a patchy environment. Ecology, 86(7), 1916-1925.
Thompson, R. M., Mouritsen, K. N., & Poulin, R. (2005). Importance of parasites and their life cycle characteristics in determining the structure of a large marine food web. Journal of Animal Ecology, 74, 77-85.
Conference Contribution - Verbal presentation and other Conference outputs
Townsend, C., & Thompson, R. (2005, September). Body size in the stream habitat templet: Community size composition along natural and human-induced environmental dimensions. Verbal presentation at the British Ecological Society 2005 Special Symposium: Body Size and the Organisation of Aquatic Ecosystems
2004
Journal - Research Article
Thompson, R. M., & Townsend, C. R. (2004). Land-use influences on New Zealand stream communities: Effects on species composition, functional organisation, and food-web structure. New Zealand Journal of Marine & Freshwater Research, 38, 595-608.
Thompson, R. M., & Townsend, C. R. (2004). Impacts of riparian afforestation on stream biofilms: An exotic forest-native grassland comparison. New Zealand Journal of Marine & Freshwater Research, 38, 895-902.
Conference Contribution - Published proceedings: Abstract
Thompson, R. M., & Townsend, C. R. (2004). Spatial variability in stream habitats and food web architecture. Bulletin of the North American Benthological Society. 1(21), (pp. 192). [Abstract]
2003
Journal - Research Article
Thompson, R. M., & Townsend, C. R. (2003). Impacts on stream food webs of native and exotic forest: An intercontinental comparison. Ecology, 84(1), 145-161.
Working Paper; Discussion Paper; Technical Report
Thompson, R. M., & Ryder, G. R. (2003). Waituna Lagoon: Summary of existing knowledge and identification of knowledge gaps [Science for Conservation 215]. Wellington, New Zealand: Department of Conservation. Retrieved from https://www.doc.govt.nz
2001
Journal - Research Article
Thompson, R. M., Townsend, C. R., Craw, D., & Frew, R. D. (2001). (Further) links from rocks to plants. Trends in Ecology & Evolution, 16, 543-544.
Thompson, R. M., Edwards, E., McIntosh, A. R., & Townsend, C. R. (2001). Allocation of effort in stream food-web studies: The best compromise? Marine & Freshwater Research, 52, 339-345.
2000
Chapter in Book - Research
Thompson, R. M., & Townsend, C. R. (2000). New Zealand's stream invertebrate communities: An international perspective. In K. Collier & M. Winterbourn (Eds.), New Zealand Stream Invertebrates: Ecology and Implications for Management. (pp. 53-74). Christchurch: New Zealand Limnological Society, The Caxton Press.
Journal - Research Article
Thompson, R. M., & Townsend, C. R. (2000). Is resolution the solution?: The effect of taxonomic resolution on the calculated attributes of three stream food webs. Freshwater Biology, 44, 413-422.
1999
Journal - Research Article
Thompson, R. M., & Townsend, C. R. (1999). The effect of seasonal variation on the community structure and food-web attributes of two streams: implications for food-web science. Oikos, 87, 75-88.
1998
Journal - Research Article
Jaarsma, N. G., De Boer, S. M., Townsend, C. R., Thompson, R. M., & Edwards, A. D. (1998). Characterising food-webs in two New Zealand streams. New Zealand Journal of Marine & Freshwater Research, 32, 271-286.
Townsend, C. R., Thompson, R. M., McIntosh, A. R., Kilroy, C., Edwards, E., & Scarsbrook, M. R. (1998). Disturbance, resource supply and food-web architecture in streams. Ecology Letters, 1, 200-209.