Associate Professor Matthew Parry

Baeumer, B., Kovács, M., & Parry, M. (2022). A higher order resolvent-positive finite difference approximation for fractional derivatives on bounded domains. Fractional Calculus & Applied Analysis, 25, 299-319. doi: 10.1007/s13540-021-00013-z

Journal - Research Article

Binny, R. N., Priest, P., French, N. P., Parry, M., Lustig, A., Hendy, S. C., … Plank, M. J. (2022). Sensitivity of RT-PCR tests for SARS-CoV-2 through time. Journal of Infectious Diseases. doi: 10.1093/infdis/jiac317

Journal - Research Article

Richter, M. E., Leonard, G. H., Smith, I. J., Langhorne, P. J., Mahoney, A. R., & Parry, M. (2022). Accuracy and precision when deriving sea-ice thickness from thermistor strings: A comparison of methods. Journal of Glaciology. Advance online publication. doi: 10.1017/jog.2022.108

Journal - Research Article

Ahn, A., Rodger, E. J., Motwani, J., Gimenez, G., Stockwell, P. A., Parry, M., … Chatterjee, A., & Eccles, M. R. (2021). Transcriptional reprogramming and constitutive PD-L1 expression in melanoma are associated with dedifferentiation and activation of interferon and tumour necrosis factor signalling pathways. Cancers, 13, 4250. doi: 10.3390/cancers13174250

Journal - Research Article

Cao, Z., Bryant, D., Molteno, T. C. A., Fox, C., & Parry, M. (2021). V-spline: An adaptive smoothing spline for trajectory reconstruction. Sensors, 21, 3215. doi: 10.3390/s21093215

Journal - Research Article

Craigie, A., McGregor, R., Whitcombe, A. L., Carlton, L., Harte, D., Sutherland, M., Parry, M., … Ussher, J., … Jack, S., & Upton, A. (2021). SARS-CoV-2 antibodies in the southern region of New Zealand, 2020. Pathology, 53(5), 645-651. doi: 10.1016/j.pathol.2021.04.001

Journal - Research Article

Afroz, F., Parry, M., & Fletcher, D. (2020). Estimating overdispersion in sparse multinomial data. Biometrics, 76, 834-842. doi: 10.1111/biom.13194

Journal - Research Article

Anglemyer, A., Moore, T. H. M., Parker, L., Chambers, T., Grady, A., Chiu, K., Parry, M., … Bero, L. (2020). Digital contact tracing technologies in epidemics: A rapid review (Review). Cochrane Database of Systematic Reviews, 8, CD013699. doi: 10.1002%2F14651858.CD013699

Journal - Research Article

Anglemyer, A., Moore, T. H. M., Parker, L., Chambers, T., Grady, A., Chiu, K., Parry, M., … Bero, L. (2020). Digital contact tracing technologies in epidemics: A rapid review. Cochrane Database of Systematic Reviews, 8, CD013699. doi: 10.1002/14651858.Cd013699

Journal - Research Article

Bender, C. M., Brody, D. C., & Parry, M. F. (2020). Making sense of the divergent series for reconstructing a Hamiltonian from its eigenstates and eigenvalues. American Journal of Physics, 88(2), 148-152. doi: 10.1119/10.0000215

Journal - Research Article

Bowden, S. A., Stockwell, P. A., Rodger, E. J., Parry, M. F., Eccles, M. R., Stayner, C., & Chatterjee, A. (2020). Extensive inter-cyst DNA methylation variation in autosomal dominant polycystic kidney disease revealed by genome scale sequencing. Frontiers in Genetics, 11, 348. doi: 10.3389/fgene.2020.00348

Journal - Research Article

Brownlie, T., Bishop, T., Parry, M., Salmon, S. E., & Hunnam, J. C. (2020). Predicting the periodic risk of anthrax in livestock in Victoria, Australia, using meteorological data. International Journal of Biometeorology, 64, 601-610. doi: 10.1007/s00484-019-01849-0

Journal - Research Article

Martin, A., Parry, M., Soundy, A. W. R., Panckhurst, B. J., Brown, P., Molteno, T. C. A., & Schumayer, D. (2020). Improving real-time position estimation using correlated noise models. Sensors, 20, 5913. doi: 10.3390/s20205913

Journal - Research Article

Wilson, N., Schwehm, M., Verrall, A. J., Parry, M., Baker, M. G., & Eichner, M. (2020). Detecting the re-emergent COVID-19 pandemic after elimination: Modelling study of combined primary care and hospital surveillance. New Zealand Medical Journal, 133(1524), 28-39. Retrieved from https://www.nzma.org.nz/journal

Journal - Research Article

Moffat, S., Fritz, Z., Slowther, A.-M., Parry, M., & Barclay, S. (2019). ‘Do not attempt CPR’ in the community: The experience of ambulance clinicians. Journal of Paramedic Practice, 11(5), 198-204. doi: 10.12968/jpar.2019.11.5.198

Journal - Research Article

Chatterjee, A., Rodger, E. J., Ahn, A., Stockwell, P. A., Parry, M., Motwani, J., … Eccles, M. R., & Hersey, P. (2018). Marked global DNA hypomethylation is associated with constitutive PD-L1 expression in melanoma. iScience, 4, 312-325. doi: 10.1016/j.isci.2018.05.021

Journal - Research Article

Craig, A. P., Cunniffe, N. J., Parry, M., Laranjeira, F. F., & Gilligan, C. A. (2018). Grower and regulator conflict in management of the citrus disease Huanglongbing in Brazil: A modelling study. Journal of Applied Ecology, 55(4), 1956-1965. doi: 10.1111/1365-2664.13122

Journal - Research Article

Craig, H. J. B., Stachowicz, K., Black, M., Parry, M., Burke, C. R., Meier, S., & Amer, P. R. (2018). Genotype by environment interactions in fertility traits in New Zealand dairy cows. Journal of Dairy Science, 101, 10991-11003. doi: 10.3168/jds.2017-14195

Journal - Research Article

Torres, U., Godsoe, W., Buckley, H. L., Parry, M., Lustig, A., & Worner, S. P. (2018). Using niche conservatism information to prioritize hotspots of invasion by non-native freshwater invertebrates in New Zealand. Diversity & Distributions, 24(12), 1802-1815. doi: 10.1111/ddi.12818

Journal - Research Article

Cameron, C., Iosua, E., Parry, M., Richards, R., & Jaye, C. (2017). More than just numbers: Challenges for professional statisticians. Statistics Education Research Journal, 16(2), 362-375. Retrieved from http://iase-web.org/Publications.php?p=SERJ

Journal - Research Article

Chatterjee, A., Macaulay, E. C., Ahn, A., Ludgate, J. L., Stockwell, P. A., Weeks, R. J., Parry, M. F., Foster, T. J., … Eccles, M. R., & Morison, I. M. (2017). Comparative assessment of DNA methylation patterns between reduced representation bisulfite sequencing and Sequenom EpiTyper methylation analysis. Epigenomics, 9(6), 823-832. doi: 10.2217/epi-2016-0176

Journal - Research Article

Chatterjee, A., Macaulay, E. C., Rodger, E. J., Stockwell, P. A., Parry, M. F., Roberts, H. E., Slatter, T. L., Hung, N. A., Devenish, C. J., & Morison, I. M. (2016). Placental hypomethylation is more pronounced in genomic loci devoid of retroelements. Genes Genomes Genetics, 6(7), 1911-1921. doi: 10.1534/g3.116.030379

Journal - Research Article

Chatterjee, A., Stockwell, P. A., Rodger, E. J., Parry, M. F., & Eccles, M. R. (2016). scan_tcga tools for integrated epigenomic and transcriptomic analysis of tumor subgroups. Epigenomics, 8(10), 1315-1330. doi: 10.2217/epi-2016-0063

Journal - Research Article

Hiscott, G., Fox, C., Parry, M., & Bryant, D. (2016). Efficient recycled algorithms for quantitative trait models on phylogenies. Genome Biology & Evolution, 8(5), 1338-1350. doi: 10.1093/gbe/evw064

Journal - Research Article

Parry, M. (2016). Extensive scoring rules. Electronic Journal of Statistics, 10(1), 1098-1108. doi: 10.1214/16-EJS1132

Journal - Research Article

Parry, M. (2016). Linear scoring rules for probabilistic binary classification. Electronic Journal of Statistics, 10(1), 1596-1607. doi: 10.1214/16-EJS1150

Journal - Research Article

Roigé, M., Parry, M., Phillips, C., & Worner, S. (2016). Self-organizing maps for analysing pest profiles: Sensitivity analysis of weights and ranks. Ecological Modelling, 342, 113-122. doi: 10.1016/j.ecolmodel.2016.10.003

Journal - Research Article

Whigham, P. A., Dick, G., & Parry, M. (2016). Network rewiring dynamics with convergence towards a star network. Proceedings of the Royal Society A, 472(2194), 20160236. doi: 10.1098/rspa.2016.0236

Journal - Research Article

Chatterjee, A., Stockwell, P. A., Rodger, E. J., Duncan, E. J., Parry, M. F., Weeks, R. J., & Morison, I. M. (2015). Genome-wide DNA methylation map of human neutrophils reveals widespread inter-individual epigenetic variation. Scientific Reports, 5, 17328. doi: 10.1038/srep17328

Journal - Research Article

Parry, M., Gibson, G. J., Parnell, S., Gottwald, T. R., Irey, M. S., Gast, T. C., & Gilligan, C. A. (2014). Bayesian inference for an emerging arboreal epidemic in the presence of control. PNAS, 111(17), 6258-6262. doi: 10.1073/pnas.1310997111

Journal - Research Article

Brody, D. C., Meister, B. K., & Parry, M. F. (2012). Informational inefficiency in financial markets. Mathematics & Financial Economics, 6(3), 249-259. doi: 10.1007/s11579-012-0078-1

Journal - Research Article

Dawid, A. P., Lauritzen, S., & Parry, M. (2012). Proper local scoring rules on discrete sample spaces. Annals of Statistics, 40(1), 593-608. doi: 10.1214/12-AOS972

Journal - Research Article

Parry, M., Dawid, A. P., & Lauritzen, S. (2012). Proper local scoring rules. Annals of Statistics, 40(1), 561-592. doi: 10.1214/12-AOS971

Journal - Research Article

Brody, D. C., Hughston, L. P., & Parry, M. F. (2010). Effects of quantum entanglement in phase transitions. Physics Letters A, 374(24), 2424-2428. doi: 10.1016/j.physleta.2010.03.060

Journal - Research Article

Parry, M. (2006). A rule of thumb for cosmological backreaction. Journal of Cosmology & Astroparticle Physics, 2006, 016. doi: 10.1088/1475-7516/2006/06/016

Journal - Research Article

Deng, J. D., & Parry, M. (2020). Data Science programmes: Is there an ideal design? Proceedings of the 62nd International Statistics Institute (ISI) World Statistics Congress: Special Topic Session. Vol. 3, (pp. 66-73). Putrajaya, Malaysia: Department of Statistics Malaysia. Retrieved from www.isi2019.org

Conference Contribution - Published proceedings: Full paper

Martin, A. D., Soundy, A. W. R., Panckhurst, B. J., Brown, C. P., Schumayer, D., Molteno, T. C. A., & Parry, M. (2017). Real-time uncertainty quantification using correlated noise models for GNSS positioning. Proceedings of the IEEE Sensors Conference. IEEE. doi: 10.1109/ICSENS.2017.8233899

Conference Contribution - Published proceedings: Full paper

Patrick, M., Craig, A. P., Cunniffe, N. J., Parry, M., & Gilligan, C. A. (2016). Testing stochastic software using pseudo-oracles. Proceedings of the 25th International Symposium on Software Testing and Analysis (ISSTA). (pp. 235-246). New York, NY: ACM. doi: 10.1145/2931037.2931063

Conference Contribution - Published proceedings: Full paper

Martin, A. D., Molteno, T. C. A., & Parry, M. (2014). Measuring the performance of sensors that report uncertainty. Proceedings of the 21st Electronics New Zealand Conference (ENZCon). (pp. 57-61). University of Waikato, New Zealand: Electronics New Zealand. [Full Paper]

Conference Contribution - Published proceedings: Full paper

Parry, M. (2014). Local scoring rules and statistical inference in unnormalized models. In J. Rissanen, P. Myllymäki, T. Roos & N. P. Santhanam (Eds.), Proceedings of the Seventh Workshop on Information Theoretic Methods in Science and Engineering [Department of Computer Science: Series of Publications B: Report B-2014-4]. (pp. 13-15). [Full Paper]

Conference Contribution - Published proceedings: Full paper

Parry, M. (2013). Multidimensional local scoring rules. Proceedings of the 59th ISI World Statistics Congress of the International Statistical Institute. (pp. 1453-1458). The Hague, The Netherlands: International Statistical Institute. Retrieved from http://2013.isiproceedings.org/

Conference Contribution - Published proceedings: Full paper

Chatterjee, A., Ahn, A., Rodger, E. J., Stockwell, P. A., Parry, M., Motwani, J., … Eccles, M. R. (2019). Global DNA methylation levels regulate PD-L1 expression in melanoma. Cancer Research, 79(13, Suppl.). doi: 10.1158/1538-7445.Am2019-826

Conference Contribution - Published proceedings: Abstract

Parry, M. F., & Calvacanti, P. P. (2019). Archetypal analysis as an autoencoder with application to data imputation. Proceedings of the New Zealand Statistical Association Conference. (pp. 34). Retrieved from https://www.otago.ac.nz/nzsa/programme-and-speakers/

Conference Contribution - Published proceedings: Abstract

Casey, B., McDonald, J., Matthaei, C., Fletcher, D., Parry, M., Cameron, C., & Dakson, C. (2016). Postgraduate peer statistics advisers: A pilot programme. Proceedings of the Tertiary Education Research in New Zealand (TERNZ) Conference. Retrieved from http://herdsa.org.nz/ternz/2016

Conference Contribution - Published proceedings: Abstract

Roigé, M., Worner, S., Parry, M., & Phillips, C. (2014). Using pest assemblages to predict invasions: Validation tests for the self-organizing map approach. Proceedings of the New Zealand Ecological Society (NZES) Annual Conference. (pp. 73). Retrieved from http://newzealandecology.org/node/40

Conference Contribution - Published proceedings: Abstract

Parry, M. (2013). Randomization and approximation in MCMC. Proceedings of the Joint New Zealand Statistical Association (NZSA) and Operations Research Society of New Zealand (ORSNZ) Conference: Analytics for a Changing World: From Data to Decisions. (pp. 57). Retrieved from https://secure.orsnz.org.nz/conf47/index.php

Conference Contribution - Published proceedings: Abstract

Ahn, A., Rodger, E. J., Stockwell, P. A., Parry, M., Motwani, J., Gallagher, S. J., … Chatterjee, A., & Eccles, M. R. (2018, August). Investigating the role of DNA methylation, gene expression, long non-coding RNA and transposable elements in constitutive PD-L1 expression in melanoma cell lines. Poster session presented at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

Conference Contribution - Poster Presentation (not in published proceedings)

Eccles, M. R., Chatterjee, A., Rodger, E. J., Ahn, A., Leichter, A., Motwani, J., Stockwell, P., & Parry, M. (2017, September). Epigenetic driver of melanoma metastasis identified by genome-wide analysis. Poster session presented at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

Conference Contribution - Poster Presentation (not in published proceedings)

Eccles, M. R., Chatterjee, A., Rodger, E. J., Ahn, A., Leichter, A., Motwani, J., Stockwell, P., & Parry, M. (2017, September). Epigenetic drivers of melanoma metastasis identified by genome-wide reduced-representation bisulphite sequencing (RRBS) analysis. Poster session presented at the Queenstown Molecular Biology (QMB) Meetings, Queenstown, New Zealand.

Conference Contribution - Poster Presentation (not in published proceedings)

Macaulay, E. C., Chatterjee, A., Rodger, E. J., Stockwell, P. A., Parry, M. F., Roberts, H. E., Slatter, T. L., Hung, N. A., & Morison, I. M. (2016, March). Placental hypomethylation is more pronounced in genomic loci devoid of retroelements. Poster session presented at the Keystone Symposia on Molecular and Cellular Biology: Chromatin and Epigenetics, Whistler, Canada.

Conference Contribution - Poster Presentation (not in published proceedings)